Wall clock time and date at job start Tue Mar 31 2020 10:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47365 * 2 1 4 4 C 1.42896 * 113.99891 * 174.84625 * 3 2 1 5 5 H 1.08997 * 109.47718 * 4.30469 * 4 3 2 6 6 C 1.50704 * 109.46883 * 124.30164 * 4 3 2 7 7 O 1.21285 * 119.99915 * 4.99521 * 6 4 3 8 8 N 1.34776 * 120.00157 * 184.99806 * 6 4 3 9 9 C 1.46927 * 120.62873 * 359.72458 * 8 6 4 10 10 C 1.53617 * 108.54527 * 126.36844 * 9 8 6 11 11 C 1.53036 * 109.24573 * 54.85226 * 10 9 8 12 12 C 1.53002 * 109.45061 * 178.50052 * 11 10 9 13 13 N 1.46501 * 109.47068 * 295.06090 * 12 11 10 14 14 C 1.36935 * 120.00055 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00234 * 0.02562 * 14 13 12 16 16 C 1.38812 * 120.00113 * 179.97438 * 14 13 12 17 17 N 1.31627 * 119.99644 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00241 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47226 * 89.99673 * 18 16 14 20 20 H 1.48497 * 109.46954 * 209.99877 * 18 16 14 21 21 H 1.48504 * 109.46694 * 329.99898 * 18 16 14 22 22 C 1.53046 * 109.53727 * 298.51225 * 11 10 9 23 23 C 1.46918 * 120.63013 * 179.97438 * 8 6 4 24 24 C 1.52997 * 109.47382 * 244.29579 * 4 3 2 25 25 C 1.53001 * 109.47271 * 305.53360 * 24 4 3 26 26 C 1.53004 * 109.46811 * 65.52978 * 24 4 3 27 27 H 1.08996 * 109.47208 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47320 * 300.00005 * 1 2 3 29 29 H 1.08999 * 109.47148 * 60.00026 * 1 2 3 30 30 H 1.08999 * 109.47320 * 239.99994 * 2 1 3 31 31 H 1.08999 * 109.47148 * 119.99974 * 2 1 3 32 32 H 1.09004 * 109.58044 * 246.19632 * 9 8 6 33 33 H 1.08999 * 109.58632 * 6.61633 * 9 8 6 34 34 H 1.09006 * 109.63199 * 294.85885 * 10 9 8 35 35 H 1.09000 * 109.43627 * 174.72483 * 10 9 8 36 36 H 1.08998 * 109.46429 * 58.53406 * 11 10 9 37 37 H 1.08997 * 109.47260 * 55.05823 * 12 11 10 38 38 H 1.09001 * 109.47101 * 175.06183 * 12 11 10 39 39 H 0.97000 * 120.00133 * 359.97438 * 13 12 11 40 40 H 0.97003 * 119.99607 * 179.97438 * 17 16 14 41 41 H 1.09002 * 109.49931 * 301.41141 * 22 11 10 42 42 H 1.08994 * 109.49588 * 181.31688 * 22 11 10 43 43 H 1.09002 * 109.59178 * 353.37715 * 23 8 6 44 44 H 1.09004 * 109.58871 * 113.66191 * 23 8 6 45 45 H 1.09003 * 109.47650 * 185.53056 * 24 4 3 46 46 H 1.08994 * 109.47334 * 59.99807 * 25 24 4 47 47 H 1.09004 * 109.46746 * 179.97438 * 25 24 4 48 48 H 1.08999 * 109.46733 * 299.99636 * 25 24 4 49 49 H 1.08999 * 109.46861 * 66.08551 * 26 24 4 50 50 H 1.08996 * 109.47066 * 186.08453 * 26 24 4 51 51 H 1.08993 * 109.47112 * 306.08612 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4259 1.4618 0.1173 5 1 3.8727 0.4677 0.1077 6 6 3.9624 2.2647 -1.0398 7 8 3.1972 2.7727 -1.8319 8 7 5.2924 2.4182 -1.1944 9 6 6.2316 1.8138 -0.2398 10 6 7.2440 0.9636 -1.0222 11 6 7.9087 1.8302 -2.0942 12 6 8.9450 0.9978 -2.8519 13 7 10.0241 0.6126 -1.9389 14 6 11.0718 -0.1410 -2.3964 15 1 11.1029 -0.4512 -3.4304 16 6 12.0945 -0.5055 -1.5314 17 7 12.0573 -0.1262 -0.2716 18 14 13.5242 -1.5330 -2.1558 19 1 14.5990 -0.6362 -2.6515 20 1 14.0507 -2.3723 -1.0496 21 1 13.0592 -2.4073 -3.2625 22 6 6.8471 2.3368 -3.0734 23 6 5.8304 3.1975 -2.3176 24 6 3.7741 2.1649 1.4307 25 6 3.0357 3.5029 1.5044 26 6 3.3520 1.2839 2.6083 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 6.7544 2.5995 0.3056 33 1 5.6851 1.1818 0.4602 34 1 6.7306 0.1274 -1.4970 35 1 8.0036 0.5839 -0.3388 36 1 8.4010 2.6796 -1.6209 37 1 8.4699 0.1018 -3.2512 38 1 9.3557 1.5873 -3.6715 39 1 9.9967 0.8921 -1.0104 40 1 12.7718 -0.3812 0.3330 41 1 6.3375 1.4878 -3.5289 42 1 7.3243 2.9346 -3.8499 43 1 5.0191 3.4788 -2.9891 44 1 6.3189 4.0953 -1.9387 45 1 4.8490 2.3403 1.4752 46 1 1.9608 3.3276 1.4600 47 1 3.2835 4.0035 2.4404 48 1 3.3364 4.1305 0.6655 49 1 3.9555 0.3763 2.6176 50 1 3.5001 1.8284 3.5408 51 1 2.2996 1.0194 2.5052 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205241911.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:39 Heat of formation + Delta-G solvation = -105.353263 kcal Electronic energy + Delta-G solvation = -27598.840259 eV Core-core repulsion = 23918.217872 eV Total energy + Delta-G solvation = -3680.622386 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -41.70456 -39.56587 -38.46055 -36.64553 -35.93536 -34.37921 -32.49384 -32.02366 -31.88543 -28.93064 -28.07398 -27.57162 -25.42173 -24.40981 -23.73917 -23.28881 -21.79864 -21.24331 -20.26932 -19.14136 -18.15008 -17.91853 -17.05164 -16.72662 -16.70560 -16.07122 -15.67566 -15.48683 -15.42180 -15.30429 -15.20906 -14.91106 -14.37802 -14.18135 -13.99321 -13.80818 -13.54084 -13.34228 -13.25998 -13.13384 -12.98983 -12.92280 -12.86555 -12.75085 -12.33212 -12.24616 -12.17836 -12.06754 -11.95250 -11.89873 -11.72560 -11.65051 -11.43162 -11.32084 -11.01632 -10.89264 -10.26811 -9.69104 -8.96703 -7.93943 -5.21474 1.48507 1.49336 1.51558 1.57717 1.78578 2.57001 2.75404 3.38397 3.39578 3.67569 3.73384 3.76257 3.84656 3.87318 4.08426 4.12018 4.16875 4.25054 4.28875 4.37015 4.38596 4.41460 4.46872 4.58199 4.64892 4.70901 4.78702 4.80773 4.83264 4.85584 4.94528 4.95360 5.01076 5.01850 5.03923 5.07466 5.14481 5.17152 5.25879 5.28627 5.36975 5.43613 5.48117 5.54279 5.55821 6.09056 6.29244 6.37114 7.11190 7.36205 8.12080 8.36893 9.29279 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.018930 B = 0.002845 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.790836 B = 9839.930890 C =10214.736120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 O -0.372 6.372 4 C 0.079 3.921 5 H 0.104 0.896 6 C 0.504 3.496 7 O -0.573 6.573 8 N -0.604 5.604 9 C 0.106 3.894 10 C -0.120 4.120 11 C -0.084 4.084 12 C 0.157 3.843 13 N -0.741 5.741 14 C -0.246 4.246 15 H 0.070 0.930 16 C -0.072 4.072 17 N -0.965 5.965 18 Si 0.969 3.031 19 H -0.288 1.288 20 H -0.294 1.294 21 H -0.273 1.273 22 C -0.115 4.115 23 C 0.114 3.886 24 C -0.107 4.107 25 C -0.136 4.136 26 C -0.144 4.144 27 H 0.091 0.909 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.014 0.986 38 H 0.017 0.983 39 H 0.377 0.623 40 H 0.252 0.748 41 H 0.059 0.941 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.099 0.901 46 H 0.054 0.946 47 H 0.071 0.929 48 H 0.030 0.970 49 H 0.067 0.933 50 H 0.072 0.928 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.965 3.255 5.269 21.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 O -0.290 6.290 4 C 0.018 3.982 5 H 0.121 0.879 6 C 0.293 3.707 7 O -0.452 6.452 8 N -0.338 5.338 9 C -0.016 4.016 10 C -0.158 4.158 11 C -0.103 4.103 12 C 0.031 3.969 13 N -0.384 5.384 14 C -0.378 4.378 15 H 0.088 0.912 16 C -0.264 4.264 17 N -0.616 5.616 18 Si 0.799 3.201 19 H -0.215 1.215 20 H -0.220 1.220 21 H -0.198 1.198 22 C -0.153 4.153 23 C -0.008 4.008 24 C -0.126 4.126 25 C -0.194 4.194 26 C -0.201 4.201 27 H 0.110 0.890 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.124 0.876 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.031 0.969 38 H 0.035 0.965 39 H 0.210 0.790 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.117 0.883 46 H 0.073 0.927 47 H 0.090 0.910 48 H 0.050 0.950 49 H 0.086 0.914 50 H 0.091 0.909 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.432 3.576 4.697 22.230 hybrid contribution 1.262 -0.646 -0.291 1.447 sum -20.170 2.930 4.406 20.852 Atomic orbital electron populations 1.21728 0.92637 1.03380 1.02623 1.22875 0.96737 0.82740 1.00821 1.87998 1.18948 1.27847 1.94223 1.22080 0.83579 0.99669 0.92886 0.87871 1.21329 0.81905 0.80864 0.86639 1.90654 1.57576 1.50442 1.46525 1.48211 1.05112 1.52301 1.28165 1.22200 0.90852 0.97600 0.90962 1.21911 0.97943 0.97865 0.98089 1.21189 0.94864 0.97980 0.96248 1.20804 0.88213 0.95434 0.92474 1.42534 1.22774 1.63136 1.09985 1.19591 0.99208 1.24043 0.94932 0.91179 1.25485 1.01622 1.03247 0.96063 1.69791 1.35088 1.52199 1.04532 0.85204 0.79634 0.78330 0.76971 1.21547 1.22025 1.19759 1.21800 0.95679 0.99947 0.97891 1.21595 0.96836 0.93971 0.88368 1.21679 1.01782 0.96405 0.92733 1.21658 1.00782 0.95708 1.01223 1.21824 1.01936 0.99542 0.96823 0.88987 0.91605 0.93161 0.93875 0.91038 0.89415 0.87567 0.92261 0.91194 0.90999 0.96852 0.96528 0.79010 0.93956 0.92240 0.89485 0.90172 0.90046 0.88271 0.92661 0.90959 0.95042 0.91381 0.90948 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 10.28 71.98 0.74 -1.37 16 2 C 0.04 0.76 6.11 71.98 0.44 1.20 16 3 O -0.37 -8.65 8.11 -129.99 -1.05 -9.70 16 4 C 0.08 1.65 1.50 29.85 0.04 1.70 16 5 H 0.10 1.78 6.91 -2.39 -0.02 1.76 16 6 C 0.50 13.62 6.13 87.66 0.54 14.16 16 7 O -0.57 -20.27 15.92 15.95 0.25 -20.02 16 8 N -0.60 -14.35 2.97 -818.14 -2.43 -16.78 16 9 C 0.11 2.17 4.92 86.51 0.43 2.60 16 10 C -0.12 -3.22 5.26 30.81 0.16 -3.06 16 11 C -0.08 -2.45 2.19 -10.77 -0.02 -2.48 16 12 C 0.16 6.06 5.65 86.38 0.49 6.55 16 13 N -0.74 -36.30 5.32 -343.45 -1.83 -38.12 16 14 C -0.25 -13.52 9.99 84.03 0.84 -12.68 16 15 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 16 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 17 N -0.97 -57.27 13.06 21.65 0.28 -56.99 16 18 Si 0.97 45.40 29.55 68.60 2.03 47.43 16 19 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 20 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 C -0.11 -2.82 5.36 30.66 0.16 -2.66 16 23 C 0.11 2.72 6.43 86.35 0.55 3.27 16 24 C -0.11 -1.79 2.29 -10.79 -0.02 -1.82 16 25 C -0.14 -2.62 8.81 71.98 0.63 -1.98 16 26 C -0.14 -1.83 9.11 71.98 0.66 -1.17 16 27 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.91 7.63 -2.39 -0.02 0.89 16 32 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.11 1.73 4.73 -2.39 -0.01 1.72 16 34 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.07 2.19 7.15 -2.39 -0.02 2.18 16 36 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.01 0.53 8.14 -2.39 -0.02 0.52 16 38 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.38 19.21 6.84 -92.71 -0.63 18.57 16 40 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 41 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.08 2.10 7.01 -2.39 -0.02 2.08 16 44 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.10 1.49 5.42 -2.39 -0.01 1.48 16 46 H 0.05 1.17 7.55 -2.39 -0.02 1.15 16 47 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 48 H 0.03 0.73 7.40 -2.39 -0.02 0.71 16 49 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.06 0.79 7.00 -2.39 -0.02 0.77 16 Total: -1.00 -69.89 391.66 3.62 -66.27 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: 0.26 Total: 29.22 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 6.10 Total: -1.31 kcal Atomic # 7 Polarization: -107.92 SS G_CDS: -3.97 Total: -111.89 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.80 Total: -29.72 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -69.89 3.62 -66.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205241911.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.079 kcal (2) G-P(sol) polarization free energy of solvation -69.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds