Wall clock time and date at job start Tue Mar 31 2020 10:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42895 * 109.47375 * 2 1 4 4 C 1.42902 * 113.99937 * 175.13744 * 3 2 1 5 5 H 1.08995 * 109.47339 * 337.67572 * 4 3 2 6 6 C 1.53001 * 109.46900 * 217.67359 * 4 3 2 7 7 C 1.50699 * 109.47369 * 65.00377 * 6 4 3 8 8 O 1.21282 * 119.99413 * 359.97438 * 7 6 4 9 9 N 1.34777 * 120.00214 * 179.72282 * 7 6 4 10 10 C 1.46923 * 120.63010 * 0.27621 * 9 7 6 11 11 C 1.53190 * 108.77225 * 233.58559 * 10 9 7 12 12 C 1.53044 * 109.31369 * 305.36130 * 11 10 9 13 13 C 1.53040 * 109.53606 * 61.36550 * 12 11 10 14 14 H 1.09004 * 109.49252 * 58.61947 * 13 12 11 15 15 N 1.46498 * 109.49736 * 178.68110 * 13 12 11 16 16 C 1.36933 * 120.00126 * 275.00336 * 15 13 12 17 17 H 1.08004 * 120.00125 * 359.97438 * 16 15 13 18 18 C 1.38820 * 119.99903 * 180.02562 * 16 15 13 19 19 N 1.31621 * 119.99635 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00046 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47036 * 90.00083 * 20 18 16 22 22 H 1.48499 * 109.47413 * 209.99769 * 20 18 16 23 23 H 1.48502 * 109.47228 * 329.99974 * 20 18 16 24 24 C 1.46923 * 120.62848 * 179.97438 * 9 7 6 25 25 C 1.53003 * 109.47222 * 97.67778 * 4 3 2 26 26 C 1.52991 * 109.47288 * 182.64179 * 25 4 3 27 27 C 1.53007 * 109.46760 * 302.64027 * 25 4 3 28 28 H 1.09003 * 109.47268 * 59.99882 * 1 2 3 29 29 H 1.08993 * 109.47454 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46838 * 299.99911 * 1 2 3 31 31 H 1.09002 * 109.46838 * 240.00089 * 2 1 3 32 32 H 1.09003 * 109.47268 * 120.00118 * 2 1 3 33 33 H 1.09000 * 109.47558 * 305.00174 * 6 4 3 34 34 H 1.09001 * 109.47110 * 185.00359 * 6 4 3 35 35 H 1.09007 * 109.58742 * 353.36927 * 10 9 7 36 36 H 1.08997 * 109.59227 * 113.79776 * 10 9 7 37 37 H 1.08995 * 109.50288 * 65.31752 * 11 10 9 38 38 H 1.09006 * 109.49563 * 185.37999 * 11 10 9 39 39 H 1.08994 * 109.45871 * 181.38680 * 12 11 10 40 40 H 1.08999 * 109.45820 * 301.36352 * 12 11 10 41 41 H 0.97004 * 119.99336 * 95.00644 * 15 13 12 42 42 H 0.97003 * 119.99597 * 180.02562 * 19 18 16 43 43 H 1.09003 * 109.58464 * 246.20297 * 24 9 7 44 44 H 1.09002 * 109.58882 * 6.62451 * 24 9 7 45 45 H 1.08998 * 109.47145 * 62.63949 * 25 4 3 46 46 H 1.08998 * 109.47215 * 59.99813 * 26 25 4 47 47 H 1.08998 * 109.47319 * 179.97438 * 26 25 4 48 48 H 1.09005 * 109.47390 * 299.99635 * 26 25 4 49 49 H 1.09001 * 109.46701 * 65.53185 * 27 25 4 50 50 H 1.08998 * 109.47113 * 185.53463 * 27 25 4 51 51 H 1.09005 * 109.46747 * 305.53550 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4265 1.4615 0.1107 5 1 3.8301 0.5545 0.5605 6 6 3.7743 2.6649 0.9892 7 6 3.2835 2.4206 2.3930 8 8 2.7114 1.3861 2.6638 9 7 3.4848 3.3496 3.3485 10 6 4.1757 4.6079 3.0355 11 6 5.3400 4.7877 4.0146 12 6 4.8134 4.6998 5.4489 13 6 4.1942 3.3200 5.6830 14 1 4.9438 2.5495 5.5028 15 7 3.7186 3.2257 7.0655 16 6 4.5828 2.8618 8.0635 17 1 5.6148 2.6440 7.8314 18 6 4.1320 2.7719 9.3734 19 7 2.8741 3.0369 9.6560 20 14 5.3106 2.2749 10.7346 21 1 5.9525 3.4883 11.3011 22 1 4.5619 1.5663 11.8035 23 1 6.3545 1.3751 10.1816 24 6 3.0116 3.1260 4.7213 25 6 4.0327 1.6540 -1.2809 26 6 5.5575 1.7104 -1.1697 27 6 3.6298 0.4825 -2.1791 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.2963 3.5584 0.5875 34 1 4.8551 2.8055 1.0016 35 1 4.5585 4.5707 2.0155 36 1 3.4808 5.4415 3.1370 37 1 6.0787 4.0035 3.8496 38 1 5.8021 5.7621 3.8553 39 1 5.6359 4.8520 6.1477 40 1 4.0567 5.4685 5.6056 41 1 2.7916 3.4209 7.2738 42 1 2.5592 2.9745 10.5714 43 1 2.2238 3.8414 4.9573 44 1 2.6259 2.1108 4.8142 45 1 3.6651 2.5853 -1.7117 46 1 5.9251 0.7791 -0.7389 47 1 5.9893 1.8470 -2.1611 48 1 5.8445 2.5449 -0.5298 49 1 2.5516 0.5008 -2.3381 50 1 4.1401 0.5680 -3.1384 51 1 3.9108 -0.4556 -1.7003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208331173.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:07 Heat of formation + Delta-G solvation = -89.728975 kcal Electronic energy + Delta-G solvation = -27476.086453 eV Core-core repulsion = 23796.141587 eV Total energy + Delta-G solvation = -3679.944866 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.19392 -38.74654 -37.06852 -35.24671 -34.44041 -32.25035 -31.72962 -31.19168 -30.16001 -28.20339 -27.29334 -25.39379 -24.25164 -23.26206 -22.69069 -22.01341 -20.39968 -19.96138 -18.72338 -17.18501 -17.10788 -17.04397 -15.89444 -15.66616 -15.21196 -14.69726 -14.44732 -14.27169 -14.02107 -13.98149 -13.70588 -13.52482 -13.23028 -13.00724 -12.87286 -12.80667 -12.50642 -12.36289 -12.25996 -12.13542 -12.06954 -11.74895 -11.41737 -11.14561 -11.01033 -10.92544 -10.89874 -10.88322 -10.73209 -10.60070 -10.39718 -10.32057 -10.06404 -9.71860 -9.47631 -9.36449 -8.90390 -8.32099 -6.97791 -5.77090 -3.06525 2.87339 3.17903 3.43435 3.48763 3.50510 3.64867 4.39689 4.52393 4.59258 4.74654 4.82064 4.95919 5.05641 5.09313 5.13787 5.17261 5.28134 5.29043 5.32732 5.35504 5.41812 5.44649 5.54338 5.56547 5.57727 5.60106 5.69863 5.74325 5.74703 5.78188 5.83127 5.85342 5.96551 6.03249 6.06202 6.06928 6.14051 6.19161 6.27879 6.41128 6.57338 6.75628 6.90454 7.06656 7.27631 7.66911 7.69536 8.40163 8.44117 9.52052 10.07964 10.43022 11.45473 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.018320 B = 0.002968 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.033434 B = 9430.277393 C =10105.998666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.058 3.942 3 O -0.372 6.372 4 C 0.112 3.888 5 H 0.069 0.931 6 C -0.144 4.144 7 C 0.516 3.484 8 O -0.536 6.536 9 N -0.608 5.608 10 C 0.108 3.892 11 C -0.133 4.133 12 C -0.137 4.137 13 C 0.169 3.831 14 H 0.049 0.951 15 N -0.722 5.722 16 C -0.238 4.238 17 H 0.070 0.930 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.107 3.893 25 C -0.115 4.115 26 C -0.150 4.150 27 C -0.148 4.148 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.063 0.937 44 H 0.091 0.909 45 H 0.077 0.923 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.059 0.941 49 H 0.062 0.938 50 H 0.055 0.945 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.460 0.160 -25.292 25.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.018 4.018 3 O -0.291 6.291 4 C 0.053 3.947 5 H 0.087 0.913 6 C -0.184 4.184 7 C 0.303 3.697 8 O -0.413 6.413 9 N -0.342 5.342 10 C -0.015 4.015 11 C -0.172 4.172 12 C -0.178 4.178 13 C 0.058 3.942 14 H 0.067 0.933 15 N -0.363 5.363 16 C -0.369 4.369 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.208 1.208 24 C -0.016 4.016 25 C -0.134 4.134 26 C -0.208 4.208 27 C -0.206 4.206 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.218 0.782 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.110 0.890 45 H 0.096 0.904 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.081 0.919 50 H 0.074 0.926 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.148 -0.326 -25.024 25.118 hybrid contribution 0.560 -0.155 0.997 1.154 sum 2.707 -0.480 -24.027 24.184 Atomic orbital electron populations 1.21712 0.94298 1.01845 1.02797 1.22573 0.95180 0.83994 1.00071 1.87846 1.20403 1.26580 1.94246 1.21800 0.82275 0.97564 0.93042 0.91342 1.21984 1.02785 1.00742 0.92842 1.20450 0.79356 0.83310 0.86548 1.90676 1.42141 1.26371 1.82099 1.48116 1.57735 1.18199 1.10180 1.21748 0.94621 0.86190 0.98921 1.21937 0.97188 1.01556 0.96540 1.22278 1.01036 1.00518 0.93940 1.20567 0.93734 0.94412 0.85473 0.93311 1.42319 1.11122 1.82169 1.00648 1.19205 0.92312 1.38350 0.87079 0.91195 1.24751 0.96274 1.02480 0.97368 1.69665 1.13960 1.55495 1.18878 0.86187 0.79876 0.78028 0.82083 1.21729 1.21747 1.20756 1.22050 0.97149 1.03064 0.79289 1.21614 0.95796 1.00043 0.95957 1.21908 0.94661 1.02200 1.01995 1.21907 1.01812 0.97694 0.99145 0.92421 0.91515 0.91752 0.93629 0.92742 0.88353 0.87777 0.90390 0.91476 0.91923 0.91403 0.91636 0.92502 0.78203 0.93466 0.91899 0.89022 0.90420 0.92474 0.92331 0.92185 0.91950 0.92640 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.28 37.16 0.38 -1.18 16 2 C 0.06 0.68 6.01 37.16 0.22 0.90 16 3 O -0.37 -4.81 8.87 -49.66 -0.44 -5.26 16 4 C 0.11 1.23 1.42 -26.73 -0.04 1.19 16 5 H 0.07 0.84 7.45 -51.93 -0.39 0.45 16 6 C -0.14 -1.54 3.59 -27.88 -0.10 -1.64 16 7 C 0.52 7.85 7.58 -10.99 -0.08 7.77 16 8 O -0.54 -10.17 14.83 -8.87 -0.13 -10.30 16 9 N -0.61 -9.09 2.97 -172.49 -0.51 -9.60 16 10 C 0.11 1.24 6.34 -3.71 -0.02 1.21 16 11 C -0.13 -1.67 6.08 -26.61 -0.16 -1.83 16 12 C -0.14 -2.34 5.46 -26.69 -0.15 -2.49 16 13 C 0.17 3.40 2.94 -67.57 -0.20 3.21 16 14 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 15 N -0.72 -18.20 5.13 -53.07 -0.27 -18.47 16 16 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 17 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -28.29 13.06 55.49 0.72 -27.56 16 20 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 C 0.11 1.96 5.93 -3.47 -0.02 1.94 16 25 C -0.12 -0.95 2.71 -90.62 -0.25 -1.20 16 26 C -0.15 -1.04 8.91 37.15 0.33 -0.71 16 27 C -0.15 -1.15 7.75 37.16 0.29 -0.87 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.44 5.55 -51.93 -0.29 0.15 16 32 H 0.05 0.72 7.99 -51.93 -0.42 0.31 16 33 H 0.10 0.93 7.94 -51.93 -0.41 0.52 16 34 H 0.10 0.88 5.81 -51.93 -0.30 0.58 16 35 H 0.08 0.66 5.93 -51.92 -0.31 0.35 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.38 10.29 7.80 -40.82 -0.32 9.97 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.09 1.90 7.00 -51.93 -0.36 1.53 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.06 0.38 6.39 -51.93 -0.33 0.05 16 49 H 0.06 0.52 6.57 -51.93 -0.34 0.18 16 50 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 51 H 0.05 0.42 7.90 -51.93 -0.41 0.00 16 LS Contribution 392.57 15.07 5.92 5.92 Total: -1.00 -32.54 392.57 -9.12 -41.66 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -9.34 Total: 7.08 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -0.04 Total: -0.95 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.06 Total: -55.64 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.57 Total: -15.56 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.54 -9.12 -41.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208331173.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.071 kcal (2) G-P(sol) polarization free energy of solvation -32.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds