Wall clock time and date at job start Tue Mar 31 2020 10:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42895 * 109.47375 * 2 1 4 4 C 1.42902 * 113.99937 * 175.13744 * 3 2 1 5 5 H 1.08995 * 109.47339 * 337.67572 * 4 3 2 6 6 C 1.53001 * 109.46900 * 217.67359 * 4 3 2 7 7 C 1.50699 * 109.47369 * 65.00377 * 6 4 3 8 8 O 1.21282 * 119.99413 * 359.97438 * 7 6 4 9 9 N 1.34777 * 120.00214 * 179.72282 * 7 6 4 10 10 C 1.46923 * 120.63010 * 0.27621 * 9 7 6 11 11 C 1.53190 * 108.77225 * 233.58559 * 10 9 7 12 12 C 1.53044 * 109.31369 * 305.36130 * 11 10 9 13 13 C 1.53040 * 109.53606 * 61.36550 * 12 11 10 14 14 H 1.09004 * 109.49252 * 58.61947 * 13 12 11 15 15 N 1.46498 * 109.49736 * 178.68110 * 13 12 11 16 16 C 1.36933 * 120.00126 * 275.00336 * 15 13 12 17 17 H 1.08004 * 120.00125 * 359.97438 * 16 15 13 18 18 C 1.38820 * 119.99903 * 180.02562 * 16 15 13 19 19 N 1.31621 * 119.99635 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00046 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47036 * 90.00083 * 20 18 16 22 22 H 1.48499 * 109.47413 * 209.99769 * 20 18 16 23 23 H 1.48502 * 109.47228 * 329.99974 * 20 18 16 24 24 C 1.46923 * 120.62848 * 179.97438 * 9 7 6 25 25 C 1.53003 * 109.47222 * 97.67778 * 4 3 2 26 26 C 1.52991 * 109.47288 * 182.64179 * 25 4 3 27 27 C 1.53007 * 109.46760 * 302.64027 * 25 4 3 28 28 H 1.09003 * 109.47268 * 59.99882 * 1 2 3 29 29 H 1.08993 * 109.47454 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46838 * 299.99911 * 1 2 3 31 31 H 1.09002 * 109.46838 * 240.00089 * 2 1 3 32 32 H 1.09003 * 109.47268 * 120.00118 * 2 1 3 33 33 H 1.09000 * 109.47558 * 305.00174 * 6 4 3 34 34 H 1.09001 * 109.47110 * 185.00359 * 6 4 3 35 35 H 1.09007 * 109.58742 * 353.36927 * 10 9 7 36 36 H 1.08997 * 109.59227 * 113.79776 * 10 9 7 37 37 H 1.08995 * 109.50288 * 65.31752 * 11 10 9 38 38 H 1.09006 * 109.49563 * 185.37999 * 11 10 9 39 39 H 1.08994 * 109.45871 * 181.38680 * 12 11 10 40 40 H 1.08999 * 109.45820 * 301.36352 * 12 11 10 41 41 H 0.97004 * 119.99336 * 95.00644 * 15 13 12 42 42 H 0.97003 * 119.99597 * 180.02562 * 19 18 16 43 43 H 1.09003 * 109.58464 * 246.20297 * 24 9 7 44 44 H 1.09002 * 109.58882 * 6.62451 * 24 9 7 45 45 H 1.08998 * 109.47145 * 62.63949 * 25 4 3 46 46 H 1.08998 * 109.47215 * 59.99813 * 26 25 4 47 47 H 1.08998 * 109.47319 * 179.97438 * 26 25 4 48 48 H 1.09005 * 109.47390 * 299.99635 * 26 25 4 49 49 H 1.09001 * 109.46701 * 65.53185 * 27 25 4 50 50 H 1.08998 * 109.47113 * 185.53463 * 27 25 4 51 51 H 1.09005 * 109.46747 * 305.53550 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4265 1.4615 0.1107 5 1 3.8301 0.5545 0.5605 6 6 3.7743 2.6649 0.9892 7 6 3.2835 2.4206 2.3930 8 8 2.7114 1.3861 2.6638 9 7 3.4848 3.3496 3.3485 10 6 4.1757 4.6079 3.0355 11 6 5.3400 4.7877 4.0146 12 6 4.8134 4.6998 5.4489 13 6 4.1942 3.3200 5.6830 14 1 4.9438 2.5495 5.5028 15 7 3.7186 3.2257 7.0655 16 6 4.5828 2.8618 8.0635 17 1 5.6148 2.6440 7.8314 18 6 4.1320 2.7719 9.3734 19 7 2.8741 3.0369 9.6560 20 14 5.3106 2.2749 10.7346 21 1 5.9525 3.4883 11.3011 22 1 4.5619 1.5663 11.8035 23 1 6.3545 1.3751 10.1816 24 6 3.0116 3.1260 4.7213 25 6 4.0327 1.6540 -1.2809 26 6 5.5575 1.7104 -1.1697 27 6 3.6298 0.4825 -2.1791 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.2963 3.5584 0.5875 34 1 4.8551 2.8055 1.0016 35 1 4.5585 4.5707 2.0155 36 1 3.4808 5.4415 3.1370 37 1 6.0787 4.0035 3.8496 38 1 5.8021 5.7621 3.8553 39 1 5.6359 4.8520 6.1477 40 1 4.0567 5.4685 5.6056 41 1 2.7916 3.4209 7.2738 42 1 2.5592 2.9745 10.5714 43 1 2.2238 3.8414 4.9573 44 1 2.6259 2.1108 4.8142 45 1 3.6651 2.5853 -1.7117 46 1 5.9251 0.7791 -0.7389 47 1 5.9893 1.8470 -2.1611 48 1 5.8445 2.5449 -0.5298 49 1 2.5516 0.5008 -2.3381 50 1 4.1401 0.5680 -3.1384 51 1 3.9108 -0.4556 -1.7003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208331173.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:06 Heat of formation + Delta-G solvation = -109.752333 kcal Electronic energy + Delta-G solvation = -27476.954731 eV Core-core repulsion = 23796.141587 eV Total energy + Delta-G solvation = -3680.813144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.34596 -39.73912 -38.41933 -36.21257 -35.96418 -33.88159 -32.76922 -32.54223 -31.25166 -29.79122 -27.87844 -26.55089 -25.95861 -24.50832 -23.59953 -23.36042 -21.52480 -20.99371 -20.00561 -19.14014 -18.18835 -17.95772 -16.99963 -16.83731 -16.62811 -16.19558 -15.61475 -15.39812 -15.25397 -15.15206 -15.02483 -14.68762 -14.55112 -14.22816 -14.03481 -13.73745 -13.59613 -13.38204 -13.00952 -12.99960 -12.90729 -12.88802 -12.85343 -12.59252 -12.35582 -12.20668 -12.16027 -12.09637 -11.85532 -11.82764 -11.70722 -11.63349 -11.55507 -11.43890 -10.92432 -10.72202 -10.23606 -9.62548 -9.04435 -7.97376 -5.27119 1.44638 1.46915 1.55207 1.70601 1.99759 2.54781 2.80014 3.35400 3.49813 3.75014 3.82723 3.97788 4.01486 4.07871 4.14018 4.18959 4.23822 4.29180 4.30373 4.36585 4.40637 4.48102 4.51346 4.54438 4.62304 4.73696 4.79700 4.81213 4.84364 4.88901 4.90648 4.94196 5.02463 5.06788 5.08819 5.09643 5.18015 5.23160 5.29067 5.40255 5.43072 5.44457 5.48332 5.53886 5.60294 6.24272 6.38887 6.51421 7.24865 7.29803 8.03008 8.27314 9.26125 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.018320 B = 0.002968 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.033434 B = 9430.277393 C =10105.998666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.058 3.942 3 O -0.390 6.390 4 C 0.107 3.893 5 H 0.047 0.953 6 C -0.134 4.134 7 C 0.506 3.494 8 O -0.584 6.584 9 N -0.608 5.608 10 C 0.104 3.896 11 C -0.123 4.123 12 C -0.128 4.128 13 C 0.168 3.832 14 H 0.031 0.969 15 N -0.737 5.737 16 C -0.239 4.239 17 H 0.074 0.926 18 C -0.076 4.076 19 N -0.970 5.970 20 Si 0.974 3.026 21 H -0.283 1.283 22 H -0.296 1.296 23 H -0.271 1.271 24 C 0.120 3.880 25 C -0.107 4.107 26 C -0.150 4.150 27 C -0.149 4.149 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.027 0.973 33 H 0.122 0.878 34 H 0.136 0.864 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.103 0.897 39 H 0.045 0.955 40 H 0.053 0.947 41 H 0.372 0.628 42 H 0.252 0.748 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.086 0.914 46 H 0.049 0.951 47 H 0.071 0.929 48 H 0.071 0.929 49 H 0.054 0.946 50 H 0.070 0.930 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.478 1.601 -28.086 28.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.018 4.018 3 O -0.310 6.310 4 C 0.048 3.952 5 H 0.066 0.934 6 C -0.173 4.173 7 C 0.296 3.704 8 O -0.464 6.464 9 N -0.341 5.341 10 C -0.017 4.017 11 C -0.162 4.162 12 C -0.169 4.169 13 C 0.059 3.941 14 H 0.049 0.951 15 N -0.377 5.377 16 C -0.371 4.371 17 H 0.091 0.909 18 C -0.268 4.268 19 N -0.620 5.620 20 Si 0.803 3.197 21 H -0.210 1.210 22 H -0.222 1.222 23 H -0.196 1.196 24 C -0.004 4.004 25 C -0.126 4.126 26 C -0.207 4.207 27 C -0.206 4.206 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.140 0.860 34 H 0.154 0.846 35 H 0.140 0.860 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.121 0.879 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.204 0.796 42 H 0.060 0.940 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.105 0.895 46 H 0.068 0.932 47 H 0.090 0.910 48 H 0.090 0.910 49 H 0.073 0.927 50 H 0.089 0.911 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.218 1.146 -27.881 28.222 hybrid contribution -0.077 -0.631 1.803 1.912 sum 4.140 0.515 -26.078 26.410 Atomic orbital electron populations 1.21719 0.93629 1.02857 1.02151 1.22600 0.95791 0.83717 0.99692 1.87805 1.21714 1.27053 1.94399 1.21970 0.81487 0.96926 0.94791 0.93437 1.22081 1.04654 1.01477 0.89121 1.21394 0.78431 0.82396 0.88167 1.90666 1.44217 1.28422 1.83070 1.48222 1.57807 1.19703 1.08418 1.22092 0.94179 0.84571 1.00869 1.21898 0.97598 1.03673 0.93036 1.22074 1.00022 0.97596 0.97169 1.20724 0.93999 0.95884 0.83464 0.95114 1.42517 1.10361 1.82397 1.02421 1.19553 0.92721 1.36949 0.87898 0.90852 1.25583 0.97926 1.03487 0.99775 1.69826 1.15824 1.57396 1.18961 0.85132 0.77923 0.77798 0.78868 1.21015 1.22242 1.19594 1.21587 0.96307 1.01029 0.81481 1.21557 0.96632 1.00497 0.93914 1.21920 0.93349 1.02341 1.03068 1.21908 1.01512 0.97403 0.99800 0.91204 0.89775 0.94082 0.91544 0.95482 0.85985 0.84619 0.85977 0.90203 0.91728 0.87869 0.93596 0.92775 0.79599 0.93966 0.91936 0.92488 0.89533 0.93196 0.90979 0.91018 0.92698 0.91095 0.93386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 10.28 71.98 0.74 -2.35 16 2 C 0.06 1.38 6.01 71.98 0.43 1.81 16 3 O -0.39 -9.91 8.87 -135.18 -1.20 -11.11 16 4 C 0.11 2.20 1.42 30.60 0.04 2.24 16 5 H 0.05 1.17 7.45 -2.39 -0.02 1.15 16 6 C -0.13 -2.48 3.59 29.85 0.11 -2.38 16 7 C 0.51 15.04 7.58 87.66 0.66 15.70 16 8 O -0.58 -23.05 14.83 10.76 0.16 -22.89 16 9 N -0.61 -17.46 2.97 -818.01 -2.43 -19.89 16 10 C 0.10 1.97 6.34 86.36 0.55 2.52 16 11 C -0.12 -2.66 6.08 30.67 0.19 -2.47 16 12 C -0.13 -4.27 5.46 30.62 0.17 -4.11 16 13 C 0.17 6.94 2.94 45.22 0.13 7.07 16 14 H 0.03 1.37 8.08 -2.39 -0.02 1.35 16 15 N -0.74 -38.57 5.13 -321.83 -1.65 -40.22 16 16 C -0.24 -13.65 9.93 84.04 0.83 -12.81 16 17 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 18 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 19 N -0.97 -60.63 13.06 21.65 0.28 -60.35 16 20 Si 0.97 47.00 29.55 68.60 2.03 49.03 16 21 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 22 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 23 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 24 C 0.12 4.53 5.93 86.52 0.51 5.04 16 25 C -0.11 -1.48 2.71 -10.79 -0.03 -1.51 16 26 C -0.15 -1.55 8.91 71.98 0.64 -0.91 16 27 C -0.15 -2.01 7.75 71.98 0.56 -1.46 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.26 5.55 -2.39 -0.01 1.24 16 32 H 0.03 0.77 7.99 -2.39 -0.02 0.75 16 33 H 0.12 1.76 7.94 -2.39 -0.02 1.74 16 34 H 0.14 1.66 5.81 -2.39 -0.01 1.64 16 35 H 0.12 1.32 5.93 -2.38 -0.01 1.30 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.37 20.92 7.80 -92.71 -0.72 20.20 16 42 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 43 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.06 2.53 7.00 -2.39 -0.02 2.51 16 45 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.07 0.57 6.39 -2.38 -0.02 0.56 16 49 H 0.05 0.82 6.57 -2.39 -0.02 0.81 16 50 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 51 H 0.05 0.69 7.90 -2.38 -0.02 0.67 16 Total: -1.00 -75.18 392.57 3.37 -71.81 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: 0.17 Total: 31.18 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: 6.01 Total: 2.44 kcal Atomic # 7 Polarization: -116.66 SS G_CDS: -3.79 Total: -120.45 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -1.04 Total: -34.00 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -75.18 3.37 -71.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208331173.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.944 kcal (2) G-P(sol) polarization free energy of solvation -75.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds