Wall clock time and date at job start Tue Mar 31 2020 10:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 H 1.09000 * 109.47461 * 59.71633 * 5 3 2 7 7 C 1.53002 * 109.46796 * 299.72392 * 5 3 2 8 8 C 1.53004 * 109.47142 * 175.00135 * 7 5 3 9 9 C 1.52996 * 109.46999 * 179.97438 * 8 7 5 10 10 C 1.53009 * 109.46823 * 179.97438 * 9 8 7 11 11 N 1.46908 * 109.46649 * 179.97438 * 10 9 8 12 12 N 1.46896 * 109.47652 * 179.72202 * 5 3 2 13 13 C 1.46905 * 110.99755 * 275.00106 * 12 5 3 14 14 C 1.52995 * 109.46922 * 274.99590 * 13 12 5 15 15 C 1.52999 * 109.47241 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47273 * 59.99967 * 15 14 13 17 17 C 1.50700 * 109.47308 * 180.02562 * 16 15 14 18 18 H 1.07994 * 120.00152 * 119.99735 * 17 16 15 19 19 C 1.37883 * 119.99996 * 300.00310 * 17 16 15 20 20 N 1.31516 * 119.99825 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00106 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47207 * 89.99391 * 21 19 17 23 23 H 1.48500 * 109.47116 * 209.99675 * 21 19 17 24 24 H 1.48500 * 109.46949 * 329.99762 * 21 19 17 25 25 C 1.52995 * 109.47013 * 300.00172 * 16 15 14 26 26 C 1.52997 * 109.47224 * 154.99784 * 13 12 5 27 27 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 29 29 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 30 30 H 1.09003 * 109.46894 * 294.99403 * 7 5 3 31 31 H 1.08997 * 109.47418 * 54.99479 * 7 5 3 32 32 H 1.09003 * 109.46628 * 299.99430 * 8 7 5 33 33 H 1.08997 * 109.47500 * 59.99393 * 8 7 5 34 34 H 1.08997 * 109.47627 * 299.99387 * 9 8 7 35 35 H 1.09003 * 109.47459 * 59.99919 * 9 8 7 36 36 H 1.08995 * 109.47238 * 299.99609 * 10 9 8 37 37 H 1.09003 * 109.46770 * 60.00537 * 10 9 8 38 38 H 1.00904 * 110.99239 * 180.02562 * 11 10 9 39 39 H 1.00897 * 110.99954 * 303.95139 * 11 10 9 40 40 H 1.00902 * 111.00075 * 38.94954 * 12 5 3 41 41 H 1.08999 * 109.47433 * 34.99398 * 13 12 5 42 42 H 1.09008 * 109.47463 * 300.00315 * 14 13 12 43 43 H 1.09005 * 109.47326 * 60.00017 * 14 13 12 44 44 H 1.08999 * 109.47063 * 299.99777 * 15 14 13 45 45 H 1.09007 * 109.47105 * 180.02562 * 15 14 13 46 46 H 1.08999 * 109.47231 * 59.99912 * 16 15 14 47 47 H 0.96994 * 119.99762 * 180.02562 * 20 19 17 48 48 H 1.09000 * 109.47266 * 299.99528 * 25 16 15 49 49 H 1.09005 * 109.47326 * 180.02562 * 25 16 15 50 50 H 1.09000 * 109.46965 * 299.99903 * 26 13 12 51 51 H 1.09007 * 109.47313 * 59.99781 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 1 3.9525 0.7785 -0.8964 7 6 4.1183 0.5848 1.2427 8 6 5.6466 0.5549 1.1755 9 6 6.1985 -0.1348 2.4247 10 6 7.7268 -0.1652 2.3571 11 7 8.2569 -0.8269 3.5569 12 7 3.9828 2.6837 -0.0117 13 6 4.0119 3.2187 -1.3795 14 6 5.3571 2.8867 -2.0284 15 6 5.3878 3.4445 -3.4527 16 6 5.2030 4.9626 -3.4101 17 6 5.2326 5.5120 -4.8131 18 1 4.3777 6.0445 -5.2026 19 6 6.3512 5.3345 -5.5995 20 7 7.3924 4.6862 -5.1250 21 14 6.3881 6.0159 -7.3383 22 1 6.9279 7.3992 -7.3165 23 1 7.2549 5.1596 -8.1872 24 1 5.0109 6.0308 -7.8935 25 6 3.8578 5.2946 -2.7612 26 6 3.8269 4.7369 -1.3374 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 3.8044 1.1343 2.1302 31 1 3.7367 -0.4350 1.2929 32 1 5.9604 0.0054 0.2880 33 1 6.0281 1.5746 1.1253 34 1 5.8847 0.4150 3.3120 35 1 5.8171 -1.1546 2.4753 36 1 8.0404 -0.7153 1.4699 37 1 8.1086 0.8545 2.3064 38 1 9.2652 -0.8593 3.5362 39 1 7.9270 -0.3732 4.3955 40 1 3.3851 3.2397 0.5814 41 1 3.2071 2.7706 -1.9622 42 1 6.1621 3.3348 -1.4457 43 1 5.4889 1.8051 -2.0584 44 1 4.5829 2.9967 -4.0357 45 1 6.3460 3.2075 -3.9152 46 1 6.0079 5.4104 -2.8272 47 1 8.1794 4.5617 -5.6781 48 1 3.0529 4.8470 -3.3441 49 1 3.7259 6.3763 -2.7312 50 1 2.8685 4.9734 -0.8751 51 1 4.6318 5.1850 -0.7547 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246149489.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:46 Heat of formation + Delta-G solvation = -123.740819 kcal Electronic energy + Delta-G solvation = -27189.088469 eV Core-core repulsion = 23507.668738 eV Total energy + Delta-G solvation = -3681.419731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.77367 -38.32595 -36.81409 -36.53539 -35.14815 -33.26207 -31.95902 -30.00977 -29.71370 -28.01600 -27.48458 -25.24245 -23.96777 -22.33817 -21.81397 -21.04431 -20.67273 -20.18521 -18.66003 -17.79494 -16.97516 -16.50075 -16.28199 -16.14877 -15.59371 -15.15670 -14.79397 -14.55231 -14.19256 -14.05418 -13.67716 -13.49120 -13.26790 -12.98234 -12.75339 -12.42455 -12.35438 -12.23215 -11.95098 -11.65967 -11.41266 -11.31076 -11.14839 -11.02876 -10.99823 -10.94128 -10.64982 -10.63417 -10.54807 -10.42556 -10.29150 -10.12748 -9.82544 -9.30740 -8.92997 -8.87428 -8.66597 -8.38420 -8.25216 -5.93828 -3.99464 2.08230 2.61894 3.32437 3.39177 3.42663 4.13775 4.26663 4.47522 4.60094 4.85809 4.88653 4.92876 4.98083 4.99801 5.05339 5.32739 5.34876 5.38096 5.41155 5.42976 5.56761 5.61343 5.68922 5.82153 5.85624 5.93161 5.96489 6.16983 6.22635 6.24930 6.33930 6.40939 6.45791 6.47675 6.58962 6.71561 6.81031 6.88861 6.95326 7.13570 7.17747 7.22120 7.35433 7.45503 7.57846 7.63934 7.80299 8.08054 8.21189 8.52797 9.04642 9.64760 11.11666 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.010518 B = 0.003537 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.430808 B = 7913.353895 C = 9898.781079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.359 6.359 3 C 0.432 3.568 4 O -0.508 6.508 5 C 0.096 3.904 6 H 0.118 0.882 7 C -0.097 4.097 8 C -0.111 4.111 9 C -0.116 4.116 10 C 0.058 3.942 11 N -0.855 5.855 12 N -0.652 5.652 13 C 0.090 3.910 14 C -0.101 4.101 15 C -0.109 4.109 16 C 0.050 3.950 17 C -0.512 4.512 18 H 0.052 0.948 19 C 0.061 3.939 20 N -0.890 5.890 21 Si 0.888 3.112 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.105 4.105 26 C -0.114 4.114 27 H 0.099 0.901 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.029 0.971 38 H 0.340 0.660 39 H 0.338 0.662 40 H 0.347 0.653 41 H 0.038 0.962 42 H 0.061 0.939 43 H 0.039 0.961 44 H 0.029 0.971 45 H 0.093 0.907 46 H 0.026 0.974 47 H 0.259 0.741 48 H 0.044 0.956 49 H 0.048 0.952 50 H 0.045 0.955 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.938 -11.690 15.809 20.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.275 6.275 3 C 0.273 3.727 4 O -0.395 6.395 5 C -0.017 4.017 6 H 0.135 0.865 7 C -0.135 4.135 8 C -0.149 4.149 9 C -0.154 4.154 10 C -0.073 4.073 11 N -0.384 5.384 12 N -0.284 5.284 13 C -0.019 4.019 14 C -0.139 4.139 15 C -0.148 4.148 16 C 0.031 3.969 17 C -0.550 4.550 18 H 0.071 0.929 19 C -0.140 4.140 20 N -0.529 5.529 21 Si 0.716 3.284 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.201 1.201 25 C -0.144 4.144 26 C -0.152 4.152 27 H 0.118 0.882 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.048 0.952 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.168 0.832 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.057 0.943 44 H 0.048 0.952 45 H 0.111 0.889 46 H 0.044 0.956 47 H 0.068 0.932 48 H 0.063 0.937 49 H 0.067 0.933 50 H 0.064 0.936 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.725 -12.228 15.500 20.556 hybrid contribution -0.809 1.442 -1.043 1.955 sum -6.534 -10.786 14.457 19.185 Atomic orbital electron populations 1.23245 0.76941 1.03482 1.02434 1.86556 1.23093 1.33907 1.83898 1.25578 0.93934 0.81445 0.71763 1.90672 1.67063 1.36419 1.45327 1.21728 0.83829 0.93638 1.02456 0.86456 1.21487 0.96804 0.99816 0.95428 1.21452 0.93735 1.02355 0.97340 1.21572 0.94400 1.01141 0.98328 1.21842 0.95444 0.96639 0.93341 1.58770 1.14421 1.60396 1.04820 1.61067 1.54541 1.00049 1.12757 1.21693 0.98231 0.95348 0.86611 1.21641 0.95133 0.98717 0.98454 1.21620 1.02929 0.98153 0.92085 1.18644 0.91060 0.92244 0.94935 1.21250 1.00424 1.34808 0.98566 0.92928 1.24958 0.95699 0.95277 0.98059 1.69874 1.04808 1.41661 1.36567 0.86666 0.77855 0.78911 0.84983 1.20790 1.21298 1.20065 1.21584 1.00757 0.98923 0.93103 1.21670 1.00226 0.93931 0.99345 0.88247 0.92098 0.91987 0.91605 0.90763 0.91791 0.89953 0.92432 0.91530 0.90940 0.95248 0.84808 0.85021 0.83215 0.94419 0.92074 0.94258 0.95213 0.88881 0.95612 0.93151 0.93691 0.93349 0.93605 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.26 10.38 -39.26 -0.41 -4.67 16 3 C 0.43 5.82 6.95 36.00 0.25 6.07 16 4 O -0.51 -8.16 15.40 -18.76 -0.29 -8.45 16 5 C 0.10 1.18 2.31 -68.87 -0.16 1.03 16 6 H 0.12 1.48 7.11 -51.93 -0.37 1.11 16 7 C -0.10 -0.96 4.86 -26.73 -0.13 -1.09 16 8 C -0.11 -1.09 5.10 -26.73 -0.14 -1.23 16 9 C -0.12 -1.03 5.47 -26.73 -0.15 -1.18 16 10 C 0.06 0.52 6.79 -3.81 -0.03 0.50 16 11 N -0.86 -6.98 9.62 -10.36 -0.10 -7.08 16 12 N -0.65 -9.13 5.36 -100.96 -0.54 -9.67 16 13 C 0.09 1.53 2.14 -67.71 -0.14 1.38 16 14 C -0.10 -1.91 5.41 -26.73 -0.14 -2.05 16 15 C -0.11 -2.54 4.98 -26.73 -0.13 -2.67 16 16 C 0.05 1.23 2.10 -91.78 -0.19 1.03 16 17 C -0.51 -14.14 8.56 -34.44 -0.29 -14.44 16 18 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 19 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 20 N -0.89 -25.30 11.32 55.43 0.63 -24.67 16 21 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C -0.11 -2.24 5.14 -26.76 -0.14 -2.38 16 26 C -0.11 -2.05 5.19 -26.76 -0.14 -2.19 16 27 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 29 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.67 8.00 -51.93 -0.42 0.26 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.94 7.75 -51.93 -0.40 0.54 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.34 2.31 9.08 -39.29 -0.36 1.96 16 39 H 0.34 2.35 8.99 -39.29 -0.35 1.99 16 40 H 0.35 4.91 7.36 -39.29 -0.29 4.62 16 41 H 0.04 0.70 7.64 -51.93 -0.40 0.30 16 42 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 43 H 0.04 0.68 7.43 -51.93 -0.39 0.29 16 44 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 46 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 48 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 49 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.05 0.78 8.12 -51.93 -0.42 0.35 16 51 H 0.06 1.15 8.14 -51.92 -0.42 0.72 16 LS Contribution 399.53 15.07 6.02 6.02 Total: -1.00 -29.80 399.53 -9.86 -39.66 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -9.59 Total: 6.73 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -0.56 Total: -14.25 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: -0.01 Total: -41.43 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.70 Total: -13.12 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.80 -9.86 -39.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246149489.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.081 kcal (2) G-P(sol) polarization free energy of solvation -29.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds