Wall clock time and date at job start Tue Mar 31 2020 10:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 H 1.09000 * 109.47461 * 59.71633 * 5 3 2 7 7 C 1.53002 * 109.46796 * 299.72392 * 5 3 2 8 8 C 1.53004 * 109.47142 * 175.00135 * 7 5 3 9 9 C 1.52996 * 109.46999 * 179.97438 * 8 7 5 10 10 C 1.53009 * 109.46823 * 179.97438 * 9 8 7 11 11 N 1.46908 * 109.46649 * 179.97438 * 10 9 8 12 12 N 1.46896 * 109.47652 * 179.72202 * 5 3 2 13 13 C 1.46905 * 110.99755 * 275.00106 * 12 5 3 14 14 C 1.52995 * 109.46922 * 274.99590 * 13 12 5 15 15 C 1.52999 * 109.47241 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47273 * 59.99967 * 15 14 13 17 17 C 1.50700 * 109.47308 * 180.02562 * 16 15 14 18 18 H 1.07994 * 120.00152 * 119.99735 * 17 16 15 19 19 C 1.37883 * 119.99996 * 300.00310 * 17 16 15 20 20 N 1.31516 * 119.99825 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00106 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47207 * 89.99391 * 21 19 17 23 23 H 1.48500 * 109.47116 * 209.99675 * 21 19 17 24 24 H 1.48500 * 109.46949 * 329.99762 * 21 19 17 25 25 C 1.52995 * 109.47013 * 300.00172 * 16 15 14 26 26 C 1.52997 * 109.47224 * 154.99784 * 13 12 5 27 27 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 29 29 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 30 30 H 1.09003 * 109.46894 * 294.99403 * 7 5 3 31 31 H 1.08997 * 109.47418 * 54.99479 * 7 5 3 32 32 H 1.09003 * 109.46628 * 299.99430 * 8 7 5 33 33 H 1.08997 * 109.47500 * 59.99393 * 8 7 5 34 34 H 1.08997 * 109.47627 * 299.99387 * 9 8 7 35 35 H 1.09003 * 109.47459 * 59.99919 * 9 8 7 36 36 H 1.08995 * 109.47238 * 299.99609 * 10 9 8 37 37 H 1.09003 * 109.46770 * 60.00537 * 10 9 8 38 38 H 1.00904 * 110.99239 * 180.02562 * 11 10 9 39 39 H 1.00897 * 110.99954 * 303.95139 * 11 10 9 40 40 H 1.00902 * 111.00075 * 38.94954 * 12 5 3 41 41 H 1.08999 * 109.47433 * 34.99398 * 13 12 5 42 42 H 1.09008 * 109.47463 * 300.00315 * 14 13 12 43 43 H 1.09005 * 109.47326 * 60.00017 * 14 13 12 44 44 H 1.08999 * 109.47063 * 299.99777 * 15 14 13 45 45 H 1.09007 * 109.47105 * 180.02562 * 15 14 13 46 46 H 1.08999 * 109.47231 * 59.99912 * 16 15 14 47 47 H 0.96994 * 119.99762 * 180.02562 * 20 19 17 48 48 H 1.09000 * 109.47266 * 299.99528 * 25 16 15 49 49 H 1.09005 * 109.47326 * 180.02562 * 25 16 15 50 50 H 1.09000 * 109.46965 * 299.99903 * 26 13 12 51 51 H 1.09007 * 109.47313 * 59.99781 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 1 3.9525 0.7785 -0.8964 7 6 4.1183 0.5848 1.2427 8 6 5.6466 0.5549 1.1755 9 6 6.1985 -0.1348 2.4247 10 6 7.7268 -0.1652 2.3571 11 7 8.2569 -0.8269 3.5569 12 7 3.9828 2.6837 -0.0117 13 6 4.0119 3.2187 -1.3795 14 6 5.3571 2.8867 -2.0284 15 6 5.3878 3.4445 -3.4527 16 6 5.2030 4.9626 -3.4101 17 6 5.2326 5.5120 -4.8131 18 1 4.3777 6.0445 -5.2026 19 6 6.3512 5.3345 -5.5995 20 7 7.3924 4.6862 -5.1250 21 14 6.3881 6.0159 -7.3383 22 1 6.9279 7.3992 -7.3165 23 1 7.2549 5.1596 -8.1872 24 1 5.0109 6.0308 -7.8935 25 6 3.8578 5.2946 -2.7612 26 6 3.8269 4.7369 -1.3374 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 3.8044 1.1343 2.1302 31 1 3.7367 -0.4350 1.2929 32 1 5.9604 0.0054 0.2880 33 1 6.0281 1.5746 1.1253 34 1 5.8847 0.4150 3.3120 35 1 5.8171 -1.1546 2.4753 36 1 8.0404 -0.7153 1.4699 37 1 8.1086 0.8545 2.3064 38 1 9.2652 -0.8593 3.5362 39 1 7.9270 -0.3732 4.3955 40 1 3.3851 3.2397 0.5814 41 1 3.2071 2.7706 -1.9622 42 1 6.1621 3.3348 -1.4457 43 1 5.4889 1.8051 -2.0584 44 1 4.5829 2.9967 -4.0357 45 1 6.3460 3.2075 -3.9152 46 1 6.0079 5.4104 -2.8272 47 1 8.1794 4.5617 -5.6781 48 1 3.0529 4.8470 -3.3441 49 1 3.7259 6.3763 -2.7312 50 1 2.8685 4.9734 -0.8751 51 1 4.6318 5.1850 -0.7547 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246149489.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:45 Heat of formation + Delta-G solvation = -142.253459 kcal Electronic energy + Delta-G solvation = -27189.891237 eV Core-core repulsion = 23507.668738 eV Total energy + Delta-G solvation = -3682.222499 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.81378 -39.73730 -37.93514 -37.44817 -36.26963 -34.78493 -33.35904 -31.41764 -31.23170 -29.20401 -28.49883 -26.48407 -25.55193 -23.43892 -23.14220 -22.21335 -21.82022 -21.33423 -20.38424 -18.81976 -18.39448 -17.96693 -17.45767 -16.92932 -16.67832 -16.43745 -16.14300 -15.63040 -15.49037 -15.07882 -14.81907 -14.68117 -14.63474 -14.39903 -14.11868 -13.94551 -13.39563 -13.22410 -13.09784 -12.97877 -12.93566 -12.76193 -12.53860 -12.38631 -12.22975 -12.09333 -11.98037 -11.92499 -11.83018 -11.74925 -11.74363 -11.42521 -11.31903 -11.16298 -10.74378 -10.52249 -10.34782 -9.63646 -9.57761 -8.05924 -6.19453 1.04843 1.40298 1.41224 1.51061 1.71177 2.44095 2.96834 3.20269 3.50690 3.79046 3.90685 3.94549 4.06954 4.12001 4.21366 4.24275 4.27777 4.29182 4.38894 4.54849 4.58330 4.66117 4.67935 4.68968 4.79354 4.83172 4.84331 4.93101 4.97724 5.02532 5.04022 5.11510 5.15925 5.23780 5.27605 5.29428 5.40504 5.50039 5.50537 5.61782 5.66502 5.71651 5.91531 6.06295 6.18798 6.27052 6.31467 6.44081 6.62438 6.62932 6.92387 7.47932 8.97805 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.010518 B = 0.003537 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.430808 B = 7913.353895 C = 9898.781079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.359 6.359 3 C 0.435 3.565 4 O -0.537 6.537 5 C 0.096 3.904 6 H 0.117 0.883 7 C -0.087 4.087 8 C -0.106 4.106 9 C -0.108 4.108 10 C 0.058 3.942 11 N -0.860 5.860 12 N -0.644 5.644 13 C 0.103 3.897 14 C -0.088 4.088 15 C -0.101 4.101 16 C 0.047 3.953 17 C -0.537 4.537 18 H 0.046 0.954 19 C 0.014 3.986 20 N -0.913 5.913 21 Si 0.949 3.051 22 H -0.276 1.276 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.099 4.099 26 C -0.106 4.106 27 H 0.133 0.867 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.024 0.976 38 H 0.347 0.653 39 H 0.345 0.655 40 H 0.350 0.650 41 H 0.027 0.973 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.020 0.980 45 H 0.061 0.939 46 H -0.004 1.004 47 H 0.260 0.740 48 H 0.039 0.961 49 H 0.046 0.954 50 H 0.062 0.938 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.759 -12.819 16.826 22.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C 0.277 3.723 4 O -0.427 6.427 5 C -0.016 4.016 6 H 0.135 0.865 7 C -0.125 4.125 8 C -0.144 4.144 9 C -0.146 4.146 10 C -0.073 4.073 11 N -0.390 5.390 12 N -0.276 5.276 13 C -0.006 4.006 14 C -0.127 4.127 15 C -0.140 4.140 16 C 0.029 3.971 17 C -0.575 4.575 18 H 0.065 0.935 19 C -0.185 4.185 20 N -0.552 5.552 21 Si 0.775 3.225 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.137 4.137 26 C -0.144 4.144 27 H 0.151 0.849 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.042 0.958 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.172 0.828 41 H 0.045 0.955 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.039 0.961 45 H 0.080 0.920 46 H 0.014 0.986 47 H 0.069 0.931 48 H 0.058 0.942 49 H 0.065 0.935 50 H 0.081 0.919 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.551 -13.376 16.536 22.255 hybrid contribution -0.576 1.753 -1.353 2.288 sum -7.127 -11.623 15.183 20.406 Atomic orbital electron populations 1.23532 0.75301 1.05667 1.02210 1.86538 1.24676 1.32851 1.83331 1.25662 0.94210 0.81467 0.70960 1.90661 1.67743 1.37406 1.46905 1.21830 0.83555 0.92509 1.03753 0.86496 1.21449 0.96539 1.00329 0.94224 1.21379 0.93718 1.01479 0.97810 1.21482 0.94125 1.01081 0.97932 1.21801 0.95672 0.96281 0.93553 1.58763 1.15113 1.60324 1.04839 1.60963 1.54965 1.01050 1.10619 1.21378 0.96427 0.94702 0.88136 1.21440 0.96145 0.99495 0.95583 1.21407 1.00661 0.97299 0.94611 1.18606 0.91962 0.92939 0.93599 1.21621 1.00480 1.35250 1.00190 0.93538 1.25695 0.95401 0.95560 1.01801 1.70007 1.05164 1.42249 1.37823 0.85694 0.77945 0.78370 0.80463 1.20224 1.20717 1.19661 1.21449 0.98345 0.99042 0.94888 1.21566 1.01210 0.94504 0.97089 0.84911 0.91793 0.92797 0.91044 0.89276 0.92127 0.91486 0.91850 0.91371 0.91616 0.95805 0.84024 0.84200 0.82839 0.95536 0.92746 0.92420 0.96133 0.92019 0.98551 0.93089 0.94239 0.93484 0.91917 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.62 16 2 O -0.36 -7.74 10.38 -51.41 -0.53 -8.27 16 3 C 0.43 10.98 6.95 71.23 0.50 11.47 16 4 O -0.54 -16.58 15.40 21.94 0.34 -16.25 16 5 C 0.10 2.19 2.31 44.17 0.10 2.30 16 6 H 0.12 2.73 7.11 -2.39 -0.02 2.72 16 7 C -0.09 -1.53 4.86 30.60 0.15 -1.38 16 8 C -0.11 -1.91 5.10 30.59 0.16 -1.75 16 9 C -0.11 -1.72 5.47 30.60 0.17 -1.55 16 10 C 0.06 0.97 6.79 86.30 0.59 1.56 16 11 N -0.86 -12.79 9.62 -186.69 -1.80 -14.59 16 12 N -0.64 -17.12 5.36 -473.32 -2.54 -19.65 16 13 C 0.10 3.43 2.14 44.91 0.10 3.52 16 14 C -0.09 -3.32 5.41 30.59 0.17 -3.16 16 15 C -0.10 -4.81 4.98 30.59 0.15 -4.66 16 16 C 0.05 2.41 2.10 -11.54 -0.02 2.39 16 17 C -0.54 -30.35 8.56 25.60 0.22 -30.13 16 18 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16 19 C 0.01 0.79 5.30 84.66 0.45 1.24 16 20 N -0.91 -52.99 11.32 21.45 0.24 -52.75 16 21 Si 0.95 44.29 29.54 68.60 2.03 46.32 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 25 C -0.10 -4.24 5.14 30.58 0.16 -4.09 16 26 C -0.11 -3.74 5.19 30.58 0.16 -3.58 16 27 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 1.00 8.13 -2.39 -0.02 0.98 16 29 H 0.05 0.97 8.13 -2.38 -0.02 0.95 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 1.34 8.00 -2.39 -0.02 1.33 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.44 7.75 -2.39 -0.02 1.42 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.35 4.29 9.08 -89.69 -0.81 3.48 16 39 H 0.35 4.23 8.99 -89.70 -0.81 3.43 16 40 H 0.35 9.30 7.36 -89.69 -0.66 8.64 16 41 H 0.03 0.96 7.64 -2.39 -0.02 0.94 16 42 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 43 H 0.06 1.94 7.43 -2.38 -0.02 1.92 16 44 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.06 3.33 6.07 -2.38 -0.01 3.31 16 46 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 47 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 48 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 50 H 0.06 2.03 8.12 -2.39 -0.02 2.01 16 51 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 Total: -1.00 -64.55 399.53 0.59 -63.96 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: -1.37 Total: 27.42 kcal Atomic # 6 Polarization: -30.42 SS G_CDS: 4.23 Total: -26.19 kcal Atomic # 7 Polarization: -82.90 SS G_CDS: -4.09 Total: -86.99 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.20 Total: -24.51 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -64.55 0.59 -63.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246149489.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.296 kcal (2) G-P(sol) polarization free energy of solvation -64.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds