Wall clock time and date at job start Tue Mar 31 2020 10:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45196 * 109.47182 * 2 1 4 4 C 1.34233 * 116.99949 * 180.02562 * 3 2 1 5 5 O 1.20819 * 120.00238 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99757 * 180.02562 * 4 3 2 7 7 C 1.53002 * 109.47007 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47201 * 179.97438 * 7 6 4 9 9 C 1.52995 * 109.47146 * 185.49132 * 8 7 6 10 10 H 1.08998 * 109.47492 * 57.48617 * 9 8 7 11 11 C 1.53006 * 109.47276 * 297.48408 * 9 8 7 12 12 N 1.46908 * 109.47217 * 177.48621 * 9 8 7 13 13 C 1.46962 * 110.99449 * 304.94778 * 12 9 8 14 14 C 1.53053 * 109.36002 * 176.81198 * 13 12 9 15 15 N 1.46952 * 109.36392 * 58.39993 * 14 13 12 16 16 C 1.46904 * 111.00152 * 176.80937 * 15 14 13 17 17 C 1.50701 * 109.46793 * 59.38859 * 16 15 14 18 18 H 1.07996 * 120.00304 * 4.37693 * 17 16 15 19 19 C 1.37877 * 120.00040 * 184.38023 * 17 16 15 20 20 N 1.31523 * 119.99590 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00117 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47284 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46923 * 120.00213 * 21 19 17 24 24 H 1.48502 * 109.47150 * 239.99775 * 21 19 17 25 25 C 1.46959 * 110.88549 * 300.67955 * 15 14 13 26 26 C 1.46955 * 110.99764 * 181.15103 * 12 9 8 27 27 H 1.08995 * 109.47407 * 59.99675 * 1 2 3 28 28 H 1.09002 * 109.47280 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47227 * 299.99528 * 1 2 3 30 30 H 1.09009 * 109.47179 * 239.99878 * 2 1 3 31 31 H 1.08995 * 109.47407 * 120.00325 * 2 1 3 32 32 H 1.08999 * 109.47407 * 60.00005 * 6 4 3 33 33 H 1.09001 * 109.46972 * 299.99414 * 6 4 3 34 34 H 1.08999 * 109.46930 * 59.99838 * 7 6 4 35 35 H 1.08997 * 109.47055 * 300.00086 * 7 6 4 36 36 H 1.08998 * 109.46823 * 65.49291 * 8 7 6 37 37 H 1.08998 * 109.46813 * 305.49145 * 8 7 6 38 38 H 1.09008 * 109.46550 * 300.00197 * 11 9 8 39 39 H 1.09000 * 109.47058 * 59.99644 * 11 9 8 40 40 H 1.08999 * 109.47214 * 180.02562 * 11 9 8 41 41 H 1.09003 * 109.48936 * 296.77810 * 13 12 9 42 42 H 1.08996 * 109.49140 * 56.84456 * 13 12 9 43 43 H 1.08996 * 109.48968 * 298.43382 * 14 13 12 44 44 H 1.09000 * 109.48500 * 178.36796 * 14 13 12 45 45 H 1.08998 * 109.47262 * 179.38894 * 16 15 14 46 46 H 1.09007 * 109.46956 * 299.39114 * 16 15 14 47 47 H 0.96999 * 119.99698 * 179.97438 * 20 19 17 48 48 H 1.09003 * 109.48559 * 299.35428 * 25 15 14 49 49 H 1.08996 * 109.49293 * 179.28919 * 25 15 14 50 50 H 1.09000 * 109.49042 * 303.14873 * 26 12 9 51 51 H 1.09000 * 109.49247 * 63.19632 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 -0.0001 8 6 6.0334 4.2711 -0.0002 9 6 7.5551 4.1936 -0.1384 10 1 7.8102 3.6555 -1.0514 11 6 8.1399 3.4565 1.0682 12 7 8.1112 5.5520 -0.1990 13 6 7.4845 6.3299 -1.2768 14 6 8.0321 7.7589 -1.2557 15 7 9.4924 7.7235 -1.4162 16 6 10.0485 9.0819 -1.4769 17 6 9.7072 9.8214 -0.2089 18 1 9.1963 9.3102 0.5935 19 6 10.0472 11.1507 -0.0734 20 7 10.6699 11.7731 -1.0505 21 14 9.6236 12.0676 1.4979 22 1 8.9299 11.1485 2.4357 23 1 10.8703 12.5699 2.1294 24 1 8.7344 13.2132 1.1782 25 6 10.1192 6.9455 -0.3384 26 6 9.5715 5.5165 -0.3595 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.5852 3.4690 0.8904 33 1 3.5844 3.4700 -0.8896 34 1 5.7844 2.3255 -0.8903 35 1 5.7846 2.3248 0.8896 36 1 5.7784 4.7698 0.9349 37 1 5.6208 4.8348 -0.8369 38 1 7.8849 3.9947 1.9812 39 1 7.7273 2.4486 1.1132 40 1 9.2241 3.4017 0.9700 41 1 7.7108 5.8678 -2.2378 42 1 6.4048 6.3520 -1.1289 43 1 7.7821 8.2302 -0.3052 44 1 7.5902 8.3298 -2.0724 45 1 11.1318 9.0265 -1.5849 46 1 9.6247 9.6102 -2.3310 47 1 10.9087 12.7084 -0.9553 48 1 9.8929 7.4076 0.6225 49 1 11.1989 6.9234 -0.4863 50 1 10.0134 4.9457 0.4572 51 1 9.8216 5.0448 -1.3099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258127642.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:47 Heat of formation + Delta-G solvation = -94.222984 kcal Electronic energy + Delta-G solvation = -26262.412376 eV Core-core repulsion = 22582.272635 eV Total energy + Delta-G solvation = -3680.139741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.79610 -39.13614 -37.22956 -36.40189 -34.25086 -32.55663 -32.11481 -30.87609 -30.43204 -27.59292 -27.16831 -24.97549 -24.08437 -22.96750 -22.28830 -21.66588 -20.85518 -20.01377 -19.06465 -17.94780 -17.16244 -16.57481 -16.43374 -15.93185 -15.60168 -14.72613 -14.59829 -14.50022 -14.12784 -14.02692 -13.77573 -13.67798 -13.39869 -13.20512 -12.85895 -12.66226 -12.42111 -12.36261 -12.16263 -12.02749 -11.87527 -11.68169 -11.39555 -11.26087 -11.04576 -11.02916 -10.93779 -10.80585 -10.76218 -10.58372 -10.52250 -10.40230 -10.23605 -9.86470 -9.76423 -9.46462 -8.40879 -7.98816 -7.12375 -5.99937 -4.08674 1.90658 2.31977 3.28293 3.36468 3.41025 4.07190 4.33653 4.43326 4.47918 4.52721 4.57415 4.66620 4.82070 4.98424 5.05374 5.08118 5.14888 5.29719 5.30355 5.31878 5.34749 5.45480 5.47773 5.51743 5.54723 5.69058 5.70450 5.86255 5.87414 5.92823 5.96434 6.03492 6.05046 6.12967 6.20002 6.21870 6.32893 6.42522 6.67526 6.82423 6.92547 7.26196 7.42096 7.44281 7.47542 7.55780 7.93256 8.09839 8.33089 8.33616 9.02543 9.58096 11.05010 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.022667 B = 0.002147 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.962473 B =13040.667467 C =13567.496143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.361 6.361 4 C 0.461 3.539 5 O -0.509 6.509 6 C -0.114 4.114 7 C -0.108 4.108 8 C -0.116 4.116 9 C 0.082 3.918 10 H 0.036 0.964 11 C -0.147 4.147 12 N -0.532 5.532 13 C 0.055 3.945 14 C 0.065 3.935 15 N -0.544 5.544 16 C 0.186 3.814 17 C -0.546 4.546 18 H 0.060 0.940 19 C 0.063 3.937 20 N -0.892 5.892 21 Si 0.889 3.111 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.064 3.936 26 C 0.058 3.942 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.031 0.969 42 H 0.072 0.928 43 H 0.049 0.951 44 H 0.066 0.934 45 H 0.027 0.973 46 H 0.033 0.967 47 H 0.261 0.739 48 H 0.047 0.953 49 H 0.066 0.934 50 H 0.071 0.929 51 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.522 -21.817 2.081 27.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.279 6.279 4 C 0.304 3.696 5 O -0.397 6.397 6 C -0.151 4.151 7 C -0.146 4.146 8 C -0.153 4.153 9 C -0.026 4.026 10 H 0.054 0.946 11 C -0.205 4.205 12 N -0.258 5.258 13 C -0.073 4.073 14 C -0.064 4.064 15 N -0.269 5.269 16 C 0.060 3.940 17 C -0.585 4.585 18 H 0.078 0.922 19 C -0.139 4.139 20 N -0.531 5.531 21 Si 0.717 3.283 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.065 4.065 26 C -0.070 4.070 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.050 0.950 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.085 0.915 45 H 0.045 0.955 46 H 0.051 0.949 47 H 0.071 0.929 48 H 0.065 0.935 49 H 0.084 0.916 50 H 0.090 0.910 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -16.239 -21.961 2.017 27.388 hybrid contribution -0.151 0.531 0.839 1.004 sum -16.390 -21.430 2.856 27.130 Atomic orbital electron populations 1.21810 0.92569 1.03013 1.03618 1.23022 0.95428 0.80266 1.02594 1.86522 1.24870 1.32403 1.84069 1.23951 0.80382 0.93174 0.72068 1.90672 1.60385 1.43374 1.45236 1.21483 0.97124 0.90413 1.06092 1.21484 0.91308 0.97928 1.03840 1.21707 0.94701 0.95642 1.03277 1.21554 0.93978 0.89569 0.97506 0.94576 1.21931 1.00833 0.99411 0.98311 1.62184 1.05026 1.12474 1.46108 1.22306 0.98191 0.95013 0.91758 1.21912 0.89847 0.93451 1.01146 1.62685 1.03578 1.17637 1.42956 1.19739 0.95283 0.82475 0.96453 1.21813 1.38267 0.95941 1.02454 0.92230 1.24975 0.94972 0.97639 0.96327 1.69964 1.40359 1.10955 1.31832 0.86589 0.78135 0.79848 0.83764 1.19785 1.21031 1.21005 1.21926 0.97908 0.91461 0.95198 1.22257 0.87213 0.98188 0.99355 0.91407 0.90226 0.91420 0.91252 0.91253 0.87460 0.87543 0.91152 0.90687 0.90699 0.91253 0.91825 0.92331 0.92572 0.95025 0.90939 0.93293 0.91524 0.95505 0.94869 0.92945 0.93504 0.91565 0.91047 0.94998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 10.29 37.15 0.38 -0.32 16 2 C 0.06 0.43 6.19 37.15 0.23 0.66 16 3 O -0.36 -3.25 10.22 -39.26 -0.40 -3.65 16 4 C 0.46 4.48 7.96 36.01 0.29 4.77 16 5 O -0.51 -6.39 15.73 -18.74 -0.29 -6.68 16 6 C -0.11 -0.84 5.81 -27.88 -0.16 -1.00 16 7 C -0.11 -0.95 4.06 -26.73 -0.11 -1.06 16 8 C -0.12 -1.15 4.41 -26.73 -0.12 -1.26 16 9 C 0.08 0.99 2.17 -67.71 -0.15 0.85 16 10 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 11 C -0.15 -1.63 8.71 37.16 0.32 -1.30 16 12 N -0.53 -8.10 4.58 -226.48 -1.04 -9.14 16 13 C 0.06 0.87 5.20 -3.76 -0.02 0.85 16 14 C 0.07 1.29 5.24 -3.77 -0.02 1.27 16 15 N -0.54 -11.85 4.92 -235.90 -1.16 -13.01 16 16 C 0.19 4.84 5.14 -4.97 -0.03 4.81 16 17 C -0.55 -15.06 7.66 -34.44 -0.26 -15.33 16 18 H 0.06 1.65 5.82 -52.49 -0.31 1.35 16 19 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 20 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 21 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 C 0.06 1.27 5.31 -3.76 -0.02 1.25 16 26 C 0.06 0.93 5.34 -3.77 -0.02 0.91 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.49 8.13 -51.92 -0.42 0.06 16 31 H 0.07 0.48 8.13 -51.93 -0.42 0.06 16 32 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.07 0.70 6.74 -51.93 -0.35 0.35 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.68 6.12 -51.93 -0.32 0.36 16 38 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 39 H 0.06 0.57 6.62 -51.93 -0.34 0.22 16 40 H 0.06 0.63 6.36 -51.93 -0.33 0.30 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.99 5.99 -51.93 -0.31 0.68 16 43 H 0.05 1.08 6.63 -51.93 -0.34 0.73 16 44 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.03 0.74 8.12 -51.93 -0.42 0.32 16 46 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 47 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 48 H 0.05 1.03 6.76 -51.93 -0.35 0.68 16 49 H 0.07 1.30 8.13 -51.93 -0.42 0.88 16 50 H 0.07 1.03 6.17 -51.93 -0.32 0.71 16 51 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 392.37 15.07 5.91 5.91 Total: -1.00 -31.39 392.37 -10.33 -41.72 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -9.29 Total: -2.86 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 0.22 Total: -3.22 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -1.46 Total: -47.78 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -0.70 Total: -10.33 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.39 -10.33 -41.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258127642.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.503 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds