Wall clock time and date at job start Tue Mar 31 2020 10:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45196 * 109.47182 * 2 1 4 4 C 1.34233 * 116.99949 * 180.02562 * 3 2 1 5 5 O 1.20819 * 120.00238 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99757 * 180.02562 * 4 3 2 7 7 C 1.53002 * 109.47007 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47201 * 179.97438 * 7 6 4 9 9 C 1.52995 * 109.47146 * 185.49132 * 8 7 6 10 10 H 1.08998 * 109.47492 * 57.48617 * 9 8 7 11 11 C 1.53006 * 109.47276 * 297.48408 * 9 8 7 12 12 N 1.46908 * 109.47217 * 177.48621 * 9 8 7 13 13 C 1.46962 * 110.99449 * 304.94778 * 12 9 8 14 14 C 1.53053 * 109.36002 * 176.81198 * 13 12 9 15 15 N 1.46952 * 109.36392 * 58.39993 * 14 13 12 16 16 C 1.46904 * 111.00152 * 176.80937 * 15 14 13 17 17 C 1.50701 * 109.46793 * 59.38859 * 16 15 14 18 18 H 1.07996 * 120.00304 * 4.37693 * 17 16 15 19 19 C 1.37877 * 120.00040 * 184.38023 * 17 16 15 20 20 N 1.31523 * 119.99590 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00117 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47284 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46923 * 120.00213 * 21 19 17 24 24 H 1.48502 * 109.47150 * 239.99775 * 21 19 17 25 25 C 1.46959 * 110.88549 * 300.67955 * 15 14 13 26 26 C 1.46955 * 110.99764 * 181.15103 * 12 9 8 27 27 H 1.08995 * 109.47407 * 59.99675 * 1 2 3 28 28 H 1.09002 * 109.47280 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47227 * 299.99528 * 1 2 3 30 30 H 1.09009 * 109.47179 * 239.99878 * 2 1 3 31 31 H 1.08995 * 109.47407 * 120.00325 * 2 1 3 32 32 H 1.08999 * 109.47407 * 60.00005 * 6 4 3 33 33 H 1.09001 * 109.46972 * 299.99414 * 6 4 3 34 34 H 1.08999 * 109.46930 * 59.99838 * 7 6 4 35 35 H 1.08997 * 109.47055 * 300.00086 * 7 6 4 36 36 H 1.08998 * 109.46823 * 65.49291 * 8 7 6 37 37 H 1.08998 * 109.46813 * 305.49145 * 8 7 6 38 38 H 1.09008 * 109.46550 * 300.00197 * 11 9 8 39 39 H 1.09000 * 109.47058 * 59.99644 * 11 9 8 40 40 H 1.08999 * 109.47214 * 180.02562 * 11 9 8 41 41 H 1.09003 * 109.48936 * 296.77810 * 13 12 9 42 42 H 1.08996 * 109.49140 * 56.84456 * 13 12 9 43 43 H 1.08996 * 109.48968 * 298.43382 * 14 13 12 44 44 H 1.09000 * 109.48500 * 178.36796 * 14 13 12 45 45 H 1.08998 * 109.47262 * 179.38894 * 16 15 14 46 46 H 1.09007 * 109.46956 * 299.39114 * 16 15 14 47 47 H 0.96999 * 119.99698 * 179.97438 * 20 19 17 48 48 H 1.09003 * 109.48559 * 299.35428 * 25 15 14 49 49 H 1.08996 * 109.49293 * 179.28919 * 25 15 14 50 50 H 1.09000 * 109.49042 * 303.14873 * 26 12 9 51 51 H 1.09000 * 109.49247 * 63.19632 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 -0.0001 8 6 6.0334 4.2711 -0.0002 9 6 7.5551 4.1936 -0.1384 10 1 7.8102 3.6555 -1.0514 11 6 8.1399 3.4565 1.0682 12 7 8.1112 5.5520 -0.1990 13 6 7.4845 6.3299 -1.2768 14 6 8.0321 7.7589 -1.2557 15 7 9.4924 7.7235 -1.4162 16 6 10.0485 9.0819 -1.4769 17 6 9.7072 9.8214 -0.2089 18 1 9.1963 9.3102 0.5935 19 6 10.0472 11.1507 -0.0734 20 7 10.6699 11.7731 -1.0505 21 14 9.6236 12.0676 1.4979 22 1 8.9299 11.1485 2.4357 23 1 10.8703 12.5699 2.1294 24 1 8.7344 13.2132 1.1782 25 6 10.1192 6.9455 -0.3384 26 6 9.5715 5.5165 -0.3595 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.5852 3.4690 0.8904 33 1 3.5844 3.4700 -0.8896 34 1 5.7844 2.3255 -0.8903 35 1 5.7846 2.3248 0.8896 36 1 5.7784 4.7698 0.9349 37 1 5.6208 4.8348 -0.8369 38 1 7.8849 3.9947 1.9812 39 1 7.7273 2.4486 1.1132 40 1 9.2241 3.4017 0.9700 41 1 7.7108 5.8678 -2.2378 42 1 6.4048 6.3520 -1.1289 43 1 7.7821 8.2302 -0.3052 44 1 7.5902 8.3298 -2.0724 45 1 11.1318 9.0265 -1.5849 46 1 9.6247 9.6102 -2.3310 47 1 10.9087 12.7084 -0.9553 48 1 9.8929 7.4076 0.6225 49 1 11.1989 6.9234 -0.4863 50 1 10.0134 4.9457 0.4572 51 1 9.8216 5.0448 -1.3099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258127642.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:46 Heat of formation + Delta-G solvation = -114.105182 kcal Electronic energy + Delta-G solvation = -26263.274533 eV Core-core repulsion = 22582.272635 eV Total energy + Delta-G solvation = -3681.001898 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.51956 -40.44421 -38.12566 -37.58492 -35.47807 -34.34704 -32.76140 -32.08377 -31.72906 -29.07085 -28.31864 -26.64644 -25.00787 -23.94649 -23.69437 -23.03768 -21.59108 -21.04651 -20.57853 -18.66935 -18.47074 -17.82767 -17.42550 -17.16751 -16.54347 -16.31400 -15.87796 -15.69213 -15.50765 -15.33287 -14.98447 -14.79022 -14.45679 -14.18701 -13.84597 -13.70864 -13.58919 -13.48304 -13.07700 -13.01718 -12.82232 -12.77567 -12.71431 -12.51563 -12.42238 -12.27519 -12.18954 -12.08360 -12.02711 -11.95835 -11.74535 -11.57109 -11.52099 -11.38687 -11.21525 -11.08935 -10.60429 -9.22593 -8.98361 -8.14721 -6.34263 1.18727 1.36303 1.37682 1.50040 1.71515 2.38039 2.94928 3.09663 3.40711 3.70347 3.78416 3.96933 4.00205 4.07619 4.07894 4.22361 4.27214 4.30089 4.33066 4.40715 4.52694 4.55461 4.58220 4.64148 4.70152 4.73531 4.80052 4.87864 4.90147 4.91882 4.92832 4.98845 5.12310 5.14827 5.15830 5.20620 5.25003 5.25931 5.28995 5.33844 5.44591 5.49285 5.51479 5.74554 6.04762 6.17210 6.19523 6.36789 6.54992 6.73569 6.86888 7.37092 8.87706 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.022667 B = 0.002147 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.962473 B =13040.667467 C =13567.496143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 O -0.365 6.365 4 C 0.461 3.539 5 O -0.544 6.544 6 C -0.109 4.109 7 C -0.099 4.099 8 C -0.108 4.108 9 C 0.082 3.918 10 H 0.036 0.964 11 C -0.144 4.144 12 N -0.543 5.543 13 C 0.067 3.933 14 C 0.066 3.934 15 N -0.545 5.545 16 C 0.199 3.801 17 C -0.552 4.552 18 H 0.056 0.944 19 C 0.010 3.990 20 N -0.927 5.927 21 Si 0.959 3.041 22 H -0.268 1.268 23 H -0.279 1.279 24 H -0.277 1.277 25 C 0.066 3.934 26 C 0.069 3.931 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.052 0.948 41 H 0.034 0.966 42 H 0.100 0.900 43 H 0.025 0.975 44 H 0.061 0.939 45 H 0.002 0.998 46 H 0.007 0.993 47 H 0.265 0.735 48 H 0.022 0.978 49 H 0.061 0.939 50 H 0.092 0.908 51 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.401 -22.911 3.157 29.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.282 6.282 4 C 0.306 3.694 5 O -0.434 6.434 6 C -0.147 4.147 7 C -0.137 4.137 8 C -0.145 4.145 9 C -0.026 4.026 10 H 0.054 0.946 11 C -0.201 4.201 12 N -0.268 5.268 13 C -0.061 4.061 14 C -0.063 4.063 15 N -0.269 5.269 16 C 0.072 3.928 17 C -0.591 4.591 18 H 0.074 0.926 19 C -0.189 4.189 20 N -0.567 5.567 21 Si 0.784 3.216 22 H -0.193 1.193 23 H -0.204 1.204 24 H -0.202 1.202 25 C -0.063 4.063 26 C -0.059 4.059 27 H 0.087 0.913 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.052 0.948 42 H 0.118 0.882 43 H 0.043 0.957 44 H 0.079 0.921 45 H 0.020 0.980 46 H 0.025 0.975 47 H 0.074 0.926 48 H 0.041 0.959 49 H 0.079 0.921 50 H 0.110 0.890 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -18.143 -23.074 3.095 29.515 hybrid contribution 0.425 0.817 0.474 1.036 sum -17.717 -22.257 3.569 28.671 Atomic orbital electron populations 1.21822 0.90602 1.04287 1.03720 1.23245 0.97006 0.79476 1.02386 1.86527 1.24508 1.33481 1.83698 1.24396 0.80392 0.93640 0.70964 1.90658 1.61079 1.44629 1.47019 1.21528 0.95942 0.89324 1.07863 1.21351 0.92305 0.96879 1.03174 1.21631 0.93019 0.96361 1.03536 1.21665 0.95386 0.87588 0.97975 0.94580 1.21904 1.00673 0.99995 0.97538 1.62179 1.04368 1.14528 1.45770 1.22190 0.99502 0.92184 0.92228 1.21944 0.88393 0.96378 0.99535 1.62625 1.05001 1.15212 1.44043 1.19402 0.93673 0.84662 0.95034 1.21978 1.38023 0.96348 1.02718 0.92616 1.25833 0.94797 0.98603 0.99689 1.70080 1.41309 1.11445 1.33859 0.85489 0.78048 0.78459 0.79569 1.19261 1.20423 1.20224 1.21944 0.97888 0.93404 0.93069 1.22114 0.88142 0.95326 1.00337 0.91287 0.88397 0.91262 0.91537 0.91479 0.85586 0.85699 0.92015 0.91238 0.90581 0.90691 0.92227 0.90896 0.92850 0.94751 0.88152 0.95715 0.92079 0.98023 0.97524 0.92640 0.95924 0.92065 0.89010 0.94769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.29 71.98 0.74 -0.37 16 2 C 0.05 0.68 6.19 71.98 0.45 1.13 16 3 O -0.37 -6.03 10.22 -51.44 -0.53 -6.55 16 4 C 0.46 8.28 7.96 71.24 0.57 8.84 16 5 O -0.54 -13.21 15.73 21.98 0.35 -12.86 16 6 C -0.11 -1.33 5.81 29.85 0.17 -1.16 16 7 C -0.10 -1.50 4.06 30.59 0.12 -1.38 16 8 C -0.11 -1.83 4.41 30.59 0.13 -1.69 16 9 C 0.08 1.77 2.17 44.91 0.10 1.87 16 10 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 11 C -0.14 -2.83 8.71 71.98 0.63 -2.21 16 12 N -0.54 -15.51 4.58 -870.43 -3.98 -19.50 16 13 C 0.07 1.99 5.20 86.31 0.45 2.44 16 14 C 0.07 2.62 5.24 86.31 0.45 3.07 16 15 N -0.54 -24.21 4.92 -900.26 -4.43 -28.64 16 16 C 0.20 10.77 5.14 85.56 0.44 11.21 16 17 C -0.55 -31.17 7.66 25.60 0.20 -30.97 16 18 H 0.06 3.15 5.82 -2.91 -0.02 3.13 16 19 C 0.01 0.57 5.46 84.65 0.46 1.03 16 20 N -0.93 -55.79 13.29 21.45 0.28 -55.50 16 21 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 C 0.07 2.63 5.31 86.31 0.46 3.09 16 26 C 0.07 2.13 5.34 86.31 0.46 2.59 16 27 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.89 8.13 -2.38 -0.02 0.87 16 31 H 0.07 0.89 8.13 -2.39 -0.02 0.87 16 32 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 35 H 0.07 1.15 6.74 -2.39 -0.02 1.13 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.07 1.20 6.12 -2.39 -0.01 1.19 16 38 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.07 1.24 6.62 -2.39 -0.02 1.22 16 40 H 0.05 1.07 6.36 -2.39 -0.02 1.06 16 41 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.10 2.45 5.99 -2.39 -0.01 2.43 16 43 H 0.02 1.09 6.63 -2.39 -0.02 1.08 16 44 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.00 0.10 8.12 -2.39 -0.02 0.08 16 46 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 47 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 48 H 0.02 1.01 6.76 -2.39 -0.02 0.99 16 49 H 0.06 2.45 8.13 -2.39 -0.02 2.43 16 50 H 0.09 2.48 6.17 -2.39 -0.01 2.46 16 51 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -68.75 392.37 0.43 -68.32 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 0.88 Total: 10.70 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 5.83 Total: -2.52 kcal Atomic # 7 Polarization: -95.51 SS G_CDS: -8.13 Total: -103.64 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.18 Total: -19.42 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -68.75 0.43 -68.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258127642.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.784 kcal (2) G-P(sol) polarization free energy of solvation -68.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds