Wall clock time and date at job start Tue Mar 31 2020 10:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00070 * 2 1 4 4 C 1.52997 * 109.47137 * 179.97438 * 3 2 1 5 5 O 1.42894 * 109.47382 * 64.99781 * 4 3 2 6 6 C 1.42905 * 113.99995 * 179.97438 * 5 4 3 7 7 N 1.46903 * 109.46885 * 80.00078 * 6 5 4 8 8 C 1.48550 * 110.99930 * 270.40135 * 7 6 5 9 9 C 1.54235 * 104.55054 * 200.45637 * 8 7 6 10 10 H 1.08996 * 112.70594 * 262.18817 * 9 8 7 11 11 C 1.54417 * 108.98289 * 136.85494 * 9 8 7 12 12 C 1.54914 * 102.98288 * 225.54651 * 11 9 8 13 13 N 1.47603 * 103.61509 * 37.11839 * 12 11 9 14 14 C 1.46897 * 111.81645 * 200.47621 * 13 12 11 15 15 C 1.53006 * 109.47085 * 308.74329 * 14 13 12 16 16 C 1.52997 * 109.47124 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47121 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99883 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99946 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00112 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99775 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47286 * 89.99791 * 21 19 17 23 23 H 1.48504 * 109.47193 * 209.99630 * 21 19 17 24 24 H 1.48498 * 109.47316 * 329.99439 * 21 19 17 25 25 C 1.47890 * 106.47774 * 321.87211 * 13 12 11 26 26 H 1.09002 * 111.75657 * 261.14908 * 25 13 12 27 27 C 1.48501 * 110.99941 * 154.99817 * 7 6 5 28 28 H 1.09002 * 109.47511 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47527 * 300.00570 * 1 2 3 30 30 H 1.09008 * 109.46650 * 60.00443 * 1 2 3 31 31 H 1.08999 * 109.47315 * 59.99678 * 3 2 1 32 32 H 1.09004 * 109.46810 * 299.99657 * 3 2 1 33 33 H 1.09004 * 109.47132 * 304.99565 * 4 3 2 34 34 H 1.09006 * 109.47029 * 185.00187 * 4 3 2 35 35 H 1.08996 * 109.47176 * 320.00271 * 6 5 4 36 36 H 1.09002 * 109.46979 * 199.99728 * 6 5 4 37 37 H 1.08998 * 110.42357 * 81.68842 * 8 7 6 38 38 H 1.09003 * 110.42252 * 319.22367 * 8 7 6 39 39 H 1.08998 * 110.71414 * 343.91714 * 11 9 8 40 40 H 1.08999 * 110.71643 * 107.17267 * 11 9 8 41 41 H 1.08998 * 110.67275 * 156.22432 * 12 11 9 42 42 H 1.09000 * 110.66737 * 279.35579 * 12 11 9 43 43 H 1.09007 * 109.47170 * 68.73760 * 14 13 12 44 44 H 1.08997 * 109.47586 * 188.74305 * 14 13 12 45 45 H 1.08998 * 109.46795 * 299.99935 * 15 14 13 46 46 H 1.08997 * 109.46928 * 59.99573 * 15 14 13 47 47 H 1.09007 * 109.47372 * 299.99579 * 16 15 14 48 48 H 1.09003 * 109.47285 * 59.99655 * 16 15 14 49 49 H 0.96998 * 120.00129 * 180.02562 * 20 19 17 50 50 H 1.08997 * 110.36422 * 40.05176 * 27 7 6 51 51 H 1.08998 * 110.46261 * 277.77393 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9658 0.5792 -1.2200 6 6 5.3823 0.4197 -1.3219 7 7 5.7972 -0.7676 -0.5626 8 6 6.1078 -0.4163 0.8469 9 6 6.9966 -1.5731 1.3477 10 1 6.4366 -2.3215 1.9084 11 6 8.1702 -0.9882 2.1630 12 6 9.3940 -1.7671 1.6194 13 7 9.1023 -1.9116 0.1797 14 6 9.8701 -3.0080 -0.4255 15 6 11.3512 -2.8467 -0.0768 16 6 12.1508 -3.9889 -0.7066 17 6 13.6094 -3.8304 -0.3626 18 1 13.9337 -2.9979 0.2442 19 6 14.5300 -4.7475 -0.8234 20 7 14.1352 -5.7610 -1.5627 21 14 16.3381 -4.5505 -0.3975 22 1 16.6291 -5.2673 0.8701 23 1 17.1687 -5.1190 -1.4895 24 1 16.6541 -3.1087 -0.2347 25 6 7.6484 -2.1586 0.0690 26 1 7.4267 -3.2192 -0.0503 27 6 7.0713 -1.3183 -1.0904 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5138 -0.8901 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8507 0.5685 0.8428 34 1 3.9784 2.1766 0.0903 35 1 5.8774 1.3018 -0.9159 36 1 5.6597 0.2967 -2.3688 37 1 5.1920 -0.3582 1.4351 38 1 6.6508 0.5277 0.8928 39 1 8.2775 0.0797 1.9727 40 1 8.0334 -1.1793 3.2274 41 1 10.3119 -1.2011 1.7781 42 1 9.4619 -2.7504 2.0848 43 1 9.5079 -3.9612 -0.0402 44 1 9.7471 -2.9834 -1.5082 45 1 11.7133 -1.8935 -0.4620 46 1 11.4742 -2.8713 1.0060 47 1 11.7885 -4.9419 -0.3209 48 1 12.0277 -3.9648 -1.7894 49 1 14.7828 -6.4064 -1.8865 50 1 7.7550 -0.5102 -1.3503 51 1 6.8829 -1.9491 -1.9591 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277947952.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:33 Heat of formation + Delta-G solvation = -78.357529 kcal Electronic energy + Delta-G solvation = -26361.554488 eV Core-core repulsion = 22682.102725 eV Total energy + Delta-G solvation = -3679.451764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.35478 -38.72053 -37.65479 -36.01487 -33.99086 -32.51564 -30.84061 -30.71512 -29.18070 -27.65036 -26.61546 -25.62800 -24.74815 -22.90455 -22.77898 -21.43066 -21.24204 -19.78617 -19.42196 -17.36419 -17.18980 -16.60096 -16.21951 -16.00486 -15.83896 -15.50864 -14.94980 -14.93520 -14.51659 -14.35016 -14.13047 -13.80141 -13.56121 -13.30492 -12.84196 -12.51677 -12.43606 -12.19738 -12.13427 -11.88091 -11.68034 -11.46799 -11.38678 -11.24055 -11.13504 -11.04381 -10.84076 -10.76499 -10.69846 -10.50859 -10.40617 -10.05491 -9.92000 -9.67286 -9.32341 -9.04087 -8.64717 -8.33129 -8.15216 -5.98256 -4.00438 3.32652 3.32738 3.38877 3.42416 3.44800 3.85434 4.18678 4.38209 4.46420 4.53796 4.62916 4.71272 4.78497 4.81302 4.96919 4.98161 5.05528 5.08465 5.11405 5.20330 5.26892 5.27878 5.35729 5.36427 5.37445 5.43317 5.53858 5.64639 5.71378 5.77707 5.83007 5.88738 5.93595 6.02136 6.13743 6.18965 6.31439 6.57316 6.67371 6.69551 6.80884 6.82705 7.01893 7.06879 7.26296 7.41266 7.69545 7.84512 8.01981 8.45103 9.06650 9.63429 11.13128 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.036355 B = 0.002000 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.988424 B =13993.752219 C =14218.760757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.064 3.936 4 C 0.056 3.944 5 O -0.365 6.365 6 C 0.217 3.783 7 N -0.531 5.531 8 C 0.039 3.961 9 C -0.100 4.100 10 H 0.089 0.911 11 C -0.120 4.120 12 C 0.043 3.957 13 N -0.520 5.520 14 C 0.051 3.949 15 C -0.108 4.108 16 C 0.022 3.978 17 C -0.519 4.519 18 H 0.054 0.946 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.066 3.934 26 H 0.070 0.930 27 C 0.054 3.946 28 H 0.086 0.914 29 H 0.038 0.962 30 H 0.040 0.960 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.034 0.966 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.044 0.956 43 H 0.031 0.969 44 H 0.072 0.928 45 H 0.054 0.946 46 H 0.047 0.953 47 H 0.013 0.987 48 H 0.016 0.984 49 H 0.260 0.740 50 H 0.061 0.939 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.125 15.474 5.619 30.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C -0.013 4.013 4 C -0.021 4.021 5 O -0.280 6.280 6 C 0.051 3.949 7 N -0.262 5.262 8 C -0.088 4.088 9 C -0.120 4.120 10 H 0.107 0.893 11 C -0.158 4.158 12 C -0.085 4.085 13 N -0.245 5.245 14 C -0.077 4.077 15 C -0.146 4.146 16 C -0.016 4.016 17 C -0.557 4.557 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.043 4.043 26 H 0.088 0.912 27 C -0.074 4.074 28 H 0.105 0.895 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.123 0.877 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.063 0.937 43 H 0.049 0.951 44 H 0.090 0.910 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.032 0.968 48 H 0.035 0.965 49 H 0.070 0.930 50 H 0.079 0.921 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -25.407 15.215 5.012 30.035 hybrid contribution 1.432 0.115 0.814 1.651 sum -23.975 15.330 5.826 29.048 Atomic orbital electron populations 1.22745 0.81249 1.02901 0.99687 1.88020 1.19379 1.27045 1.95305 1.22541 0.92548 0.85602 1.00585 1.22693 0.93325 0.97097 0.88996 1.88059 1.21971 1.81426 1.36574 1.23289 0.81745 0.90597 0.99268 1.65145 1.30006 1.28628 1.02435 1.23403 0.98659 0.96657 0.90120 1.22728 0.96002 0.97150 0.96114 0.89269 1.22659 0.94040 1.00113 0.99007 1.22999 0.98306 0.99095 0.88063 1.64150 1.02966 1.43419 1.13948 1.22448 0.95345 0.90429 0.99442 1.21703 0.91558 1.01257 1.00086 1.19070 0.94068 0.92468 0.95968 1.21242 0.92519 1.09925 1.32017 0.92743 1.25030 0.98942 0.95354 0.95201 1.69965 1.34288 1.13712 1.35544 0.86600 0.85183 0.78278 0.77971 1.20722 1.21227 1.19895 1.23078 0.88614 0.98402 0.94222 0.91173 1.22961 0.88452 0.98482 0.97500 0.89534 0.94304 0.94125 0.92074 0.92590 0.91734 0.92212 0.94879 0.87731 0.90363 0.93398 0.90908 0.91125 0.89700 0.93748 0.95101 0.91000 0.92690 0.93441 0.96826 0.96546 0.93039 0.92072 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -4.00 10.67 -40.09 -0.43 -4.43 16 3 C 0.06 0.51 6.32 37.16 0.23 0.75 16 4 C 0.06 0.49 5.99 37.16 0.22 0.71 16 5 O -0.37 -4.23 10.54 -40.09 -0.42 -4.65 16 6 C 0.22 2.24 6.13 60.07 0.37 2.61 16 7 N -0.53 -6.17 5.50 -235.95 -1.30 -7.47 16 8 C 0.04 0.40 5.26 -2.26 -0.01 0.39 16 9 C -0.10 -1.12 4.02 -88.17 -0.35 -1.47 16 10 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 11 C -0.12 -1.28 6.61 -24.98 -0.17 -1.45 16 12 C 0.04 0.59 5.10 -2.43 -0.01 0.57 16 13 N -0.52 -7.74 4.82 -221.90 -1.07 -8.81 16 14 C 0.05 0.89 5.06 -3.82 -0.02 0.87 16 15 C -0.11 -2.25 4.79 -26.73 -0.13 -2.38 16 16 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 17 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 21 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 25 C 0.07 0.87 3.46 -65.38 -0.23 0.64 16 26 H 0.07 0.98 7.66 -51.93 -0.40 0.58 16 27 C 0.05 0.66 6.04 -2.21 -0.01 0.64 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.04 0.24 8.14 -51.92 -0.42 -0.18 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.60 5.43 -51.93 -0.28 0.32 16 34 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 35 H 0.03 0.30 7.25 -51.93 -0.38 -0.08 16 36 H 0.10 1.01 7.86 -51.93 -0.41 0.60 16 37 H 0.08 0.76 6.10 -51.93 -0.32 0.44 16 38 H 0.05 0.47 6.66 -51.93 -0.35 0.12 16 39 H 0.07 0.75 7.19 -51.93 -0.37 0.38 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 1.19 7.72 -51.93 -0.40 0.79 16 42 H 0.04 0.63 7.95 -51.93 -0.41 0.22 16 43 H 0.03 0.55 7.87 -51.93 -0.41 0.14 16 44 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.05 0.97 6.82 -51.93 -0.35 0.61 16 47 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 50 H 0.06 0.77 7.84 -51.93 -0.41 0.36 16 51 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 393.22 15.07 5.93 5.93 Total: -1.00 -32.35 393.22 -10.64 -42.99 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -9.52 Total: -3.92 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 0.46 Total: -10.02 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: -1.63 Total: -42.74 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.85 Total: -9.08 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.35 -10.64 -42.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277947952.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.364 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds