Wall clock time and date at job start Tue Mar 31 2020 10:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00070 * 2 1 4 4 C 1.52997 * 109.47137 * 179.97438 * 3 2 1 5 5 O 1.42894 * 109.47382 * 64.99781 * 4 3 2 6 6 C 1.42905 * 113.99995 * 179.97438 * 5 4 3 7 7 N 1.46903 * 109.46885 * 80.00078 * 6 5 4 8 8 C 1.48550 * 110.99930 * 270.40135 * 7 6 5 9 9 C 1.54235 * 104.55054 * 200.45637 * 8 7 6 10 10 H 1.08996 * 112.70594 * 262.18817 * 9 8 7 11 11 C 1.54417 * 108.98289 * 136.85494 * 9 8 7 12 12 C 1.54914 * 102.98288 * 225.54651 * 11 9 8 13 13 N 1.47603 * 103.61509 * 37.11839 * 12 11 9 14 14 C 1.46897 * 111.81645 * 200.47621 * 13 12 11 15 15 C 1.53006 * 109.47085 * 308.74329 * 14 13 12 16 16 C 1.52997 * 109.47124 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47121 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99883 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99946 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00112 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99775 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47286 * 89.99791 * 21 19 17 23 23 H 1.48504 * 109.47193 * 209.99630 * 21 19 17 24 24 H 1.48498 * 109.47316 * 329.99439 * 21 19 17 25 25 C 1.47890 * 106.47774 * 321.87211 * 13 12 11 26 26 H 1.09002 * 111.75657 * 261.14908 * 25 13 12 27 27 C 1.48501 * 110.99941 * 154.99817 * 7 6 5 28 28 H 1.09002 * 109.47511 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47527 * 300.00570 * 1 2 3 30 30 H 1.09008 * 109.46650 * 60.00443 * 1 2 3 31 31 H 1.08999 * 109.47315 * 59.99678 * 3 2 1 32 32 H 1.09004 * 109.46810 * 299.99657 * 3 2 1 33 33 H 1.09004 * 109.47132 * 304.99565 * 4 3 2 34 34 H 1.09006 * 109.47029 * 185.00187 * 4 3 2 35 35 H 1.08996 * 109.47176 * 320.00271 * 6 5 4 36 36 H 1.09002 * 109.46979 * 199.99728 * 6 5 4 37 37 H 1.08998 * 110.42357 * 81.68842 * 8 7 6 38 38 H 1.09003 * 110.42252 * 319.22367 * 8 7 6 39 39 H 1.08998 * 110.71414 * 343.91714 * 11 9 8 40 40 H 1.08999 * 110.71643 * 107.17267 * 11 9 8 41 41 H 1.08998 * 110.67275 * 156.22432 * 12 11 9 42 42 H 1.09000 * 110.66737 * 279.35579 * 12 11 9 43 43 H 1.09007 * 109.47170 * 68.73760 * 14 13 12 44 44 H 1.08997 * 109.47586 * 188.74305 * 14 13 12 45 45 H 1.08998 * 109.46795 * 299.99935 * 15 14 13 46 46 H 1.08997 * 109.46928 * 59.99573 * 15 14 13 47 47 H 1.09007 * 109.47372 * 299.99579 * 16 15 14 48 48 H 1.09003 * 109.47285 * 59.99655 * 16 15 14 49 49 H 0.96998 * 120.00129 * 180.02562 * 20 19 17 50 50 H 1.08997 * 110.36422 * 40.05176 * 27 7 6 51 51 H 1.08998 * 110.46261 * 277.77393 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9658 0.5792 -1.2200 6 6 5.3823 0.4197 -1.3219 7 7 5.7972 -0.7676 -0.5626 8 6 6.1078 -0.4163 0.8469 9 6 6.9966 -1.5731 1.3477 10 1 6.4366 -2.3215 1.9084 11 6 8.1702 -0.9882 2.1630 12 6 9.3940 -1.7671 1.6194 13 7 9.1023 -1.9116 0.1797 14 6 9.8701 -3.0080 -0.4255 15 6 11.3512 -2.8467 -0.0768 16 6 12.1508 -3.9889 -0.7066 17 6 13.6094 -3.8304 -0.3626 18 1 13.9337 -2.9979 0.2442 19 6 14.5300 -4.7475 -0.8234 20 7 14.1352 -5.7610 -1.5627 21 14 16.3381 -4.5505 -0.3975 22 1 16.6291 -5.2673 0.8701 23 1 17.1687 -5.1190 -1.4895 24 1 16.6541 -3.1087 -0.2347 25 6 7.6484 -2.1586 0.0690 26 1 7.4267 -3.2192 -0.0503 27 6 7.0713 -1.3183 -1.0904 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5138 -0.8901 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8507 0.5685 0.8428 34 1 3.9784 2.1766 0.0903 35 1 5.8774 1.3018 -0.9159 36 1 5.6597 0.2967 -2.3688 37 1 5.1920 -0.3582 1.4351 38 1 6.6508 0.5277 0.8928 39 1 8.2775 0.0797 1.9727 40 1 8.0334 -1.1793 3.2274 41 1 10.3119 -1.2011 1.7781 42 1 9.4619 -2.7504 2.0848 43 1 9.5079 -3.9612 -0.0402 44 1 9.7471 -2.9834 -1.5082 45 1 11.7133 -1.8935 -0.4620 46 1 11.4742 -2.8713 1.0060 47 1 11.7885 -4.9419 -0.3209 48 1 12.0277 -3.9648 -1.7894 49 1 14.7828 -6.4064 -1.8865 50 1 7.7550 -0.5102 -1.3503 51 1 6.8829 -1.9491 -1.9591 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277947952.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:32 Heat of formation + Delta-G solvation = -102.563725 kcal Electronic energy + Delta-G solvation = -26362.604148 eV Core-core repulsion = 22682.102725 eV Total energy + Delta-G solvation = -3680.501423 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.33089 -39.48524 -38.42907 -37.12980 -35.69384 -34.12213 -32.26624 -31.49014 -30.17666 -28.94217 -27.26246 -27.15123 -25.58525 -24.56318 -23.43700 -22.67960 -22.30643 -21.15482 -20.56103 -18.55701 -18.07720 -17.87536 -17.28018 -16.88925 -16.67602 -16.47692 -16.33774 -16.17099 -15.83130 -15.37337 -15.13063 -14.89377 -14.54910 -14.32189 -14.18714 -13.84194 -13.59866 -13.39224 -13.22095 -13.01282 -12.83632 -12.79614 -12.49799 -12.38149 -12.30816 -12.16527 -12.08675 -11.96870 -11.90638 -11.79768 -11.58494 -11.49885 -11.33491 -11.07879 -10.74834 -10.58487 -10.56056 -9.51313 -9.37015 -8.20662 -6.32012 1.39404 1.41015 1.52271 2.40188 2.56639 2.89730 2.93938 3.12318 3.22463 3.41565 3.58408 3.81414 3.94678 4.12198 4.15794 4.19633 4.21509 4.26395 4.32755 4.37418 4.43053 4.44257 4.47840 4.50847 4.57799 4.58644 4.62713 4.67581 4.68868 4.76086 4.81318 4.87774 4.94591 4.96904 4.98700 5.07097 5.10007 5.13529 5.22253 5.28913 5.50339 5.69984 5.72612 5.84142 5.87308 6.06872 6.09438 6.21267 6.26221 6.33245 6.84683 7.37237 8.91239 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.036355 B = 0.002000 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.988424 B =13993.752219 C =14218.760757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.060 3.940 4 C 0.050 3.950 5 O -0.389 6.389 6 C 0.216 3.784 7 N -0.545 5.545 8 C 0.045 3.955 9 C -0.097 4.097 10 H 0.094 0.906 11 C -0.107 4.107 12 C 0.036 3.964 13 N -0.521 5.521 14 C 0.063 3.937 15 C -0.090 4.090 16 C 0.025 3.975 17 C -0.543 4.543 18 H 0.060 0.940 19 C -0.002 4.002 20 N -0.933 5.933 21 Si 0.967 3.033 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.263 1.263 25 C 0.061 3.939 26 H 0.058 0.942 27 C 0.061 3.939 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.034 0.966 43 H 0.023 0.977 44 H 0.066 0.934 45 H 0.052 0.948 46 H 0.052 0.948 47 H -0.011 1.011 48 H -0.009 1.009 49 H 0.264 0.736 50 H 0.058 0.942 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.493 17.461 7.094 31.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C -0.016 4.016 4 C -0.026 4.026 5 O -0.304 6.304 6 C 0.051 3.949 7 N -0.276 5.276 8 C -0.082 4.082 9 C -0.116 4.116 10 H 0.112 0.888 11 C -0.145 4.145 12 C -0.092 4.092 13 N -0.245 5.245 14 C -0.065 4.065 15 C -0.128 4.128 16 C -0.012 4.012 17 C -0.580 4.580 18 H 0.078 0.922 19 C -0.200 4.200 20 N -0.574 5.574 21 Si 0.791 3.209 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.187 1.187 25 C -0.049 4.049 26 H 0.076 0.924 27 C -0.067 4.067 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.123 0.877 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.099 0.901 42 H 0.053 0.947 43 H 0.042 0.958 44 H 0.085 0.915 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.007 0.993 48 H 0.010 0.990 49 H 0.072 0.928 50 H 0.077 0.923 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -25.798 17.224 6.499 31.693 hybrid contribution 1.476 -0.518 0.343 1.602 sum -24.321 16.706 6.842 30.289 Atomic orbital electron populations 1.22889 0.79764 1.03503 1.00837 1.87962 1.21237 1.28705 1.95577 1.22704 0.92032 0.84972 1.01905 1.22903 0.94034 0.97975 0.87719 1.88032 1.22458 1.81910 1.38025 1.23340 0.81564 0.90665 0.99350 1.65119 1.29443 1.29757 1.03278 1.23398 0.98929 0.96516 0.89344 1.22736 0.96244 0.97563 0.95100 0.88809 1.22614 0.91895 1.00038 0.99944 1.23089 0.99738 0.99100 0.87245 1.64130 1.03858 1.41651 1.14894 1.22158 0.93704 0.91236 0.99366 1.21429 0.92945 0.98719 0.99719 1.18973 0.94309 0.93354 0.94595 1.21677 0.93853 1.10263 1.32257 0.92208 1.26009 1.04244 0.94849 0.94872 1.70101 1.36143 1.14595 1.36525 0.85426 0.78725 0.78811 0.77956 1.19720 1.20703 1.18714 1.23124 0.87503 0.98152 0.96073 0.92397 1.22819 0.88800 0.98146 0.96942 0.89335 0.92609 0.93462 0.89540 0.92353 0.92301 0.89827 0.93198 0.87715 0.89503 0.92368 0.89934 0.89062 0.90148 0.94720 0.95835 0.91543 0.92884 0.92954 0.99307 0.99028 0.92777 0.92344 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.57 16 2 O -0.42 -8.35 10.67 -144.34 -1.54 -9.89 16 3 C 0.06 0.86 6.32 71.98 0.45 1.31 16 4 C 0.05 0.78 5.99 71.98 0.43 1.21 16 5 O -0.39 -8.52 10.54 -144.34 -1.52 -10.04 16 6 C 0.22 4.17 6.13 127.69 0.78 4.95 16 7 N -0.54 -11.96 5.50 ******* -5.51 -17.47 16 8 C 0.05 0.83 5.26 86.40 0.45 1.28 16 9 C -0.10 -1.97 4.02 -9.21 -0.04 -2.01 16 10 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 11 C -0.11 -2.02 6.61 31.73 0.21 -1.81 16 12 C 0.04 0.94 5.10 86.82 0.44 1.38 16 13 N -0.52 -15.27 4.82 -855.95 -4.13 -19.40 16 14 C 0.06 2.27 5.06 86.31 0.44 2.71 16 15 C -0.09 -3.82 4.79 30.60 0.15 -3.67 16 16 C 0.03 1.37 4.97 29.85 0.15 1.52 16 17 C -0.54 -31.51 9.11 25.60 0.23 -31.27 16 18 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 19 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 20 N -0.93 -57.72 13.29 21.45 0.28 -57.44 16 21 Si 0.97 44.79 29.54 68.60 2.03 46.81 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 25 C 0.06 1.55 3.46 45.88 0.16 1.71 16 26 H 0.06 1.63 7.66 -2.39 -0.02 1.61 16 27 C 0.06 1.45 6.04 86.46 0.52 1.97 16 28 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.06 0.97 5.43 -2.39 -0.01 0.96 16 34 H 0.08 0.87 8.09 -2.38 -0.02 0.85 16 35 H 0.05 0.79 7.25 -2.39 -0.02 0.77 16 36 H 0.10 1.94 7.86 -2.39 -0.02 1.92 16 37 H 0.09 1.47 6.10 -2.39 -0.01 1.45 16 38 H 0.06 0.96 6.66 -2.39 -0.02 0.94 16 39 H 0.08 1.44 7.19 -2.39 -0.02 1.42 16 40 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.08 2.16 7.72 -2.39 -0.02 2.15 16 42 H 0.03 0.97 7.95 -2.39 -0.02 0.95 16 43 H 0.02 0.87 7.87 -2.38 -0.02 0.85 16 44 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.05 2.14 6.82 -2.39 -0.02 2.13 16 47 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 48 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 49 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 50 H 0.06 1.42 7.84 -2.39 -0.02 1.40 16 51 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -70.12 393.22 -3.42 -73.54 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.87 Total: 12.70 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: 6.10 Total: -18.81 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -9.35 Total: -94.31 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -3.06 Total: -19.93 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -70.12 -3.42 -73.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277947952.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.019 kcal (2) G-P(sol) polarization free energy of solvation -70.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds