Wall clock time and date at job start Tue Mar 31 2020 10:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42901 * 109.47405 * 2 1 4 4 C 1.42900 * 114.00065 * 184.76464 * 3 2 1 5 5 H 1.09002 * 109.47095 * 12.54832 * 4 3 2 6 6 C 1.50700 * 109.46944 * 132.54675 * 4 3 2 7 7 O 1.21286 * 120.00362 * 12.09508 * 6 4 3 8 8 N 1.34782 * 120.00114 * 191.82048 * 6 4 3 9 9 C 1.46930 * 120.62823 * 356.57783 * 8 6 4 10 10 C 1.53188 * 108.76961 * 126.36848 * 9 8 6 11 11 C 1.53037 * 109.31336 * 54.64044 * 10 9 8 12 12 C 1.53038 * 109.53808 * 298.62944 * 11 10 9 13 13 H 1.08997 * 109.49987 * 301.38314 * 12 11 10 14 14 C 1.53004 * 109.50155 * 181.31751 * 12 11 10 15 15 N 1.46493 * 109.46872 * 64.99808 * 14 12 11 16 16 C 1.36940 * 119.99960 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99964 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00256 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99720 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99966 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47199 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46968 * 120.00054 * 20 18 16 23 23 H 1.48499 * 109.47283 * 240.00197 * 20 18 16 24 24 C 1.46921 * 120.62945 * 176.30660 * 8 6 4 25 25 C 1.52996 * 109.47360 * 252.54457 * 4 3 2 26 26 C 1.53002 * 109.47312 * 302.71079 * 25 4 3 27 27 C 1.53003 * 109.47073 * 62.70652 * 25 4 3 28 28 H 1.08995 * 109.47617 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47126 * 300.00420 * 1 2 3 30 30 H 1.09003 * 109.47061 * 59.99711 * 1 2 3 31 31 H 1.08996 * 109.47191 * 240.00042 * 2 1 3 32 32 H 1.09007 * 109.47580 * 119.99769 * 2 1 3 33 33 H 1.09001 * 109.58762 * 246.15903 * 9 8 6 34 34 H 1.09005 * 109.58264 * 6.58593 * 9 8 6 35 35 H 1.09007 * 109.49511 * 174.58750 * 10 9 8 36 36 H 1.08993 * 109.50470 * 294.65151 * 10 9 8 37 37 H 1.09002 * 109.46526 * 58.65205 * 11 10 9 38 38 H 1.09003 * 109.46241 * 178.61309 * 11 10 9 39 39 H 1.08996 * 109.47276 * 184.99889 * 14 12 11 40 40 H 1.08997 * 109.46733 * 305.00350 * 14 12 11 41 41 H 0.96998 * 120.00669 * 0.02562 * 15 14 12 42 42 H 0.97002 * 119.99594 * 179.97438 * 19 18 16 43 43 H 1.08993 * 109.59131 * 353.41000 * 24 8 6 44 44 H 1.09000 * 109.58948 * 113.84386 * 24 8 6 45 45 H 1.08996 * 109.47732 * 182.70958 * 25 4 3 46 46 H 1.08999 * 109.46967 * 64.06637 * 26 25 4 47 47 H 1.08996 * 109.47251 * 184.06624 * 26 25 4 48 48 H 1.08993 * 109.47000 * 304.06697 * 26 25 4 49 49 H 1.09008 * 109.46774 * 59.02854 * 27 25 4 50 50 H 1.08996 * 109.47240 * 179.02705 * 27 25 4 51 51 H 1.08993 * 109.47465 * 299.03384 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4266 1.4615 -0.1084 5 1 3.8481 0.4973 -0.3924 6 6 3.7693 2.4880 -1.1572 7 8 2.9062 3.2187 -1.5956 8 7 5.0361 2.5978 -1.6042 9 6 6.1079 1.7760 -1.0257 10 6 6.8272 1.0359 -2.1577 11 6 7.3052 2.0485 -3.2009 12 6 6.0991 2.7814 -3.7929 13 1 5.4199 2.0585 -4.2446 14 6 6.5752 3.7702 -4.8591 15 7 7.1683 3.0337 -5.9779 16 6 7.6666 3.7131 -7.0574 17 1 7.6228 4.7919 -7.0837 18 6 8.2282 3.0153 -8.1179 19 7 8.2811 1.7005 -8.0861 20 14 8.9086 3.9421 -9.5901 21 1 8.7300 5.4016 -9.3819 22 1 10.3541 3.6375 -9.7418 23 1 8.1832 3.5242 -10.8166 24 6 5.3704 3.5373 -2.6832 25 6 4.0077 1.8954 1.2387 26 6 3.3660 3.2158 1.6696 27 6 3.7180 0.8210 2.2889 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 6.8160 2.4164 -0.4998 34 1 5.6796 1.0534 -0.3309 35 1 7.6847 0.4979 -1.7534 36 1 6.1411 0.3290 -2.6240 37 1 7.9721 2.7696 -2.7283 38 1 7.8389 1.5270 -3.9954 39 1 5.7276 4.3544 -5.2172 40 1 7.3208 4.4382 -4.4279 41 1 7.2073 2.0648 -5.9546 42 1 8.6731 1.2129 -8.8274 43 1 4.4559 3.9764 -3.0818 44 1 6.0172 4.3242 -2.2952 45 1 5.0852 2.0291 1.1436 46 1 2.2993 3.0644 1.8348 47 1 3.8311 3.5616 2.5927 48 1 3.5104 3.9619 0.8883 49 1 4.1605 -0.1240 1.9735 50 1 4.1469 1.1221 3.2446 51 1 2.6402 0.6994 2.3965 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752797573.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:38 Heat of formation + Delta-G solvation = -86.857197 kcal Electronic energy + Delta-G solvation = -27575.297294 eV Core-core repulsion = 23895.476957 eV Total energy + Delta-G solvation = -3679.820337 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.70339 -38.64517 -37.25964 -35.38753 -34.74784 -32.71712 -31.72700 -31.38420 -30.06045 -27.76771 -27.38866 -25.59104 -24.87788 -23.07038 -22.74429 -22.02095 -20.86761 -19.97105 -19.16632 -17.30452 -17.21655 -16.85439 -16.35018 -15.73321 -15.17083 -14.81658 -14.61356 -14.39660 -14.31313 -14.16092 -13.84312 -13.55032 -13.34534 -13.04745 -12.81157 -12.70169 -12.65406 -12.45085 -12.35136 -12.25912 -12.08250 -11.92705 -11.56139 -11.42170 -11.21485 -11.06576 -11.01802 -10.86412 -10.83503 -10.60170 -10.33524 -10.19605 -10.10411 -9.94174 -9.70949 -9.31555 -8.86989 -8.57903 -6.90439 -5.75923 -3.04001 2.57765 2.70622 3.44129 3.49977 3.52116 3.56180 4.26421 4.38732 4.52127 4.60419 4.71147 4.76501 4.81545 4.88396 4.94433 5.01732 5.08704 5.09918 5.19965 5.27231 5.32103 5.37722 5.41413 5.47776 5.55682 5.58224 5.61050 5.64572 5.66147 5.76230 5.84038 5.86084 5.88473 5.95736 5.99642 6.08691 6.15827 6.17551 6.21709 6.46148 6.52558 6.66404 6.80758 6.87723 6.90583 7.39160 7.72101 8.18542 8.43303 9.54582 10.12463 10.47273 11.47204 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.023240 B = 0.002715 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.555450 B =10309.331015 C =10574.777826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.350 6.350 4 C 0.079 3.921 5 H 0.084 0.916 6 C 0.510 3.490 7 O -0.521 6.521 8 N -0.607 5.607 9 C 0.102 3.898 10 C -0.136 4.136 11 C -0.111 4.111 12 C -0.107 4.107 13 H 0.073 0.927 14 C 0.160 3.840 15 N -0.731 5.731 16 C -0.237 4.237 17 H 0.071 0.929 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.120 3.880 25 C -0.109 4.109 26 C -0.142 4.142 27 C -0.148 4.148 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.021 0.979 40 H 0.021 0.979 41 H 0.384 0.616 42 H 0.254 0.746 43 H 0.091 0.909 44 H 0.068 0.932 45 H 0.086 0.914 46 H 0.065 0.935 47 H 0.054 0.946 48 H 0.056 0.944 49 H 0.054 0.946 50 H 0.061 0.939 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.829 -5.283 24.115 26.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.268 6.268 4 C 0.017 3.983 5 H 0.102 0.898 6 C 0.297 3.703 7 O -0.396 6.396 8 N -0.343 5.343 9 C -0.021 4.021 10 C -0.175 4.175 11 C -0.149 4.149 12 C -0.127 4.127 13 H 0.091 0.909 14 C 0.032 3.968 15 N -0.375 5.375 16 C -0.368 4.368 17 H 0.089 0.911 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.002 4.002 25 C -0.128 4.128 26 C -0.199 4.199 27 C -0.205 4.205 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.038 0.962 40 H 0.039 0.961 41 H 0.218 0.782 42 H 0.064 0.936 43 H 0.110 0.890 44 H 0.086 0.914 45 H 0.104 0.896 46 H 0.084 0.916 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.073 0.927 50 H 0.080 0.920 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.408 -4.578 23.793 25.992 hybrid contribution 0.732 -0.229 -0.978 1.243 sum -8.676 -4.807 22.815 24.878 Atomic orbital electron populations 1.21722 0.93474 1.02163 1.03399 1.22700 0.96017 0.83736 1.00098 1.88034 1.18670 1.26102 1.94012 1.22010 0.83902 0.98105 0.94254 0.89780 1.20566 0.82082 0.84904 0.82736 1.90708 1.47106 1.43570 1.58179 1.48097 1.07299 1.41318 1.37537 1.21925 0.89868 0.94218 0.96042 1.21967 1.00264 0.98591 0.96644 1.21525 0.97403 0.97769 0.98167 1.21599 0.97064 0.98674 0.95327 0.90896 1.20581 0.95430 0.93008 0.87787 1.42351 1.71580 1.06004 1.17582 1.19288 1.30805 0.91236 0.95449 0.91130 1.24734 1.02062 0.95546 0.98774 1.69670 1.51028 1.05095 1.32546 0.86112 0.78370 0.78784 0.82922 1.20554 1.21909 1.21893 1.21549 1.00902 0.90970 0.86757 1.21603 1.00434 0.97324 0.93449 1.21717 1.01568 0.95674 1.00930 1.21871 1.02429 0.97709 0.98478 0.91104 0.91840 0.91581 0.93310 0.93052 0.90980 0.90164 0.90748 0.91586 0.91991 0.90196 0.96162 0.96129 0.78242 0.93619 0.89030 0.91400 0.89592 0.91617 0.92739 0.92495 0.92728 0.92009 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 37.15 0.38 -0.81 16 2 C 0.05 0.45 6.07 37.15 0.23 0.68 16 3 O -0.35 -4.21 8.42 -54.84 -0.46 -4.67 16 4 C 0.08 0.85 1.52 -27.88 -0.04 0.81 16 5 H 0.08 0.75 6.66 -51.93 -0.35 0.40 16 6 C 0.51 7.24 5.87 -10.98 -0.06 7.18 16 7 O -0.52 -9.60 15.92 -14.06 -0.22 -9.82 16 8 N -0.61 -7.78 2.98 -173.03 -0.52 -8.29 16 9 C 0.10 0.98 5.20 -3.71 -0.02 0.97 16 10 C -0.14 -1.50 6.08 -26.61 -0.16 -1.66 16 11 C -0.11 -1.62 5.06 -26.69 -0.13 -1.75 16 12 C -0.11 -1.75 2.36 -90.72 -0.21 -1.96 16 13 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 14 C 0.16 3.24 5.66 -4.04 -0.02 3.22 16 15 N -0.73 -18.54 5.32 -59.91 -0.32 -18.86 16 16 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 17 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 18 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 19 N -0.93 -28.32 13.06 55.49 0.72 -27.59 16 20 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 C 0.12 1.76 5.68 -3.93 -0.02 1.73 16 25 C -0.11 -0.93 2.39 -90.62 -0.22 -1.15 16 26 C -0.14 -1.39 8.81 37.16 0.33 -1.07 16 27 C -0.15 -0.96 8.40 37.16 0.31 -0.65 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.42 8.06 -51.93 -0.42 0.00 16 32 H 0.05 0.35 6.67 -51.93 -0.35 0.01 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.59 4.74 -51.93 -0.25 0.35 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.08 1.39 7.15 -51.93 -0.37 1.01 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.38 10.15 6.85 -40.82 -0.28 9.87 16 42 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.09 1.50 7.03 -51.93 -0.36 1.14 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.09 0.64 5.96 -51.93 -0.31 0.33 16 46 H 0.06 0.70 7.75 -51.93 -0.40 0.30 16 47 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.69 7.13 -51.93 -0.37 0.32 16 49 H 0.05 0.30 8.14 -51.92 -0.42 -0.13 16 50 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.06 0.45 6.73 -51.93 -0.35 0.10 16 LS Contribution 390.29 15.07 5.88 5.88 Total: -1.00 -33.55 390.29 -9.10 -42.65 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -9.27 Total: 4.97 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 0.10 Total: -1.85 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.11 Total: -54.74 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.69 Total: -14.49 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.55 -9.10 -42.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752797573.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.205 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds