Wall clock time and date at job start Tue Mar 31 2020 10:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42901 * 109.47405 * 2 1 4 4 C 1.42900 * 114.00065 * 184.76464 * 3 2 1 5 5 H 1.09002 * 109.47095 * 12.54832 * 4 3 2 6 6 C 1.50700 * 109.46944 * 132.54675 * 4 3 2 7 7 O 1.21286 * 120.00362 * 12.09508 * 6 4 3 8 8 N 1.34782 * 120.00114 * 191.82048 * 6 4 3 9 9 C 1.46930 * 120.62823 * 356.57783 * 8 6 4 10 10 C 1.53188 * 108.76961 * 126.36848 * 9 8 6 11 11 C 1.53037 * 109.31336 * 54.64044 * 10 9 8 12 12 C 1.53038 * 109.53808 * 298.62944 * 11 10 9 13 13 H 1.08997 * 109.49987 * 301.38314 * 12 11 10 14 14 C 1.53004 * 109.50155 * 181.31751 * 12 11 10 15 15 N 1.46493 * 109.46872 * 64.99808 * 14 12 11 16 16 C 1.36940 * 119.99960 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99964 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00256 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99720 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99966 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47199 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46968 * 120.00054 * 20 18 16 23 23 H 1.48499 * 109.47283 * 240.00197 * 20 18 16 24 24 C 1.46921 * 120.62945 * 176.30660 * 8 6 4 25 25 C 1.52996 * 109.47360 * 252.54457 * 4 3 2 26 26 C 1.53002 * 109.47312 * 302.71079 * 25 4 3 27 27 C 1.53003 * 109.47073 * 62.70652 * 25 4 3 28 28 H 1.08995 * 109.47617 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47126 * 300.00420 * 1 2 3 30 30 H 1.09003 * 109.47061 * 59.99711 * 1 2 3 31 31 H 1.08996 * 109.47191 * 240.00042 * 2 1 3 32 32 H 1.09007 * 109.47580 * 119.99769 * 2 1 3 33 33 H 1.09001 * 109.58762 * 246.15903 * 9 8 6 34 34 H 1.09005 * 109.58264 * 6.58593 * 9 8 6 35 35 H 1.09007 * 109.49511 * 174.58750 * 10 9 8 36 36 H 1.08993 * 109.50470 * 294.65151 * 10 9 8 37 37 H 1.09002 * 109.46526 * 58.65205 * 11 10 9 38 38 H 1.09003 * 109.46241 * 178.61309 * 11 10 9 39 39 H 1.08996 * 109.47276 * 184.99889 * 14 12 11 40 40 H 1.08997 * 109.46733 * 305.00350 * 14 12 11 41 41 H 0.96998 * 120.00669 * 0.02562 * 15 14 12 42 42 H 0.97002 * 119.99594 * 179.97438 * 19 18 16 43 43 H 1.08993 * 109.59131 * 353.41000 * 24 8 6 44 44 H 1.09000 * 109.58948 * 113.84386 * 24 8 6 45 45 H 1.08996 * 109.47732 * 182.70958 * 25 4 3 46 46 H 1.08999 * 109.46967 * 64.06637 * 26 25 4 47 47 H 1.08996 * 109.47251 * 184.06624 * 26 25 4 48 48 H 1.08993 * 109.47000 * 304.06697 * 26 25 4 49 49 H 1.09008 * 109.46774 * 59.02854 * 27 25 4 50 50 H 1.08996 * 109.47240 * 179.02705 * 27 25 4 51 51 H 1.08993 * 109.47465 * 299.03384 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4266 1.4615 -0.1084 5 1 3.8481 0.4973 -0.3924 6 6 3.7693 2.4880 -1.1572 7 8 2.9062 3.2187 -1.5956 8 7 5.0361 2.5978 -1.6042 9 6 6.1079 1.7760 -1.0257 10 6 6.8272 1.0359 -2.1577 11 6 7.3052 2.0485 -3.2009 12 6 6.0991 2.7814 -3.7929 13 1 5.4199 2.0585 -4.2446 14 6 6.5752 3.7702 -4.8591 15 7 7.1683 3.0337 -5.9779 16 6 7.6666 3.7131 -7.0574 17 1 7.6228 4.7919 -7.0837 18 6 8.2282 3.0153 -8.1179 19 7 8.2811 1.7005 -8.0861 20 14 8.9086 3.9421 -9.5901 21 1 8.7300 5.4016 -9.3819 22 1 10.3541 3.6375 -9.7418 23 1 8.1832 3.5242 -10.8166 24 6 5.3704 3.5373 -2.6832 25 6 4.0077 1.8954 1.2387 26 6 3.3660 3.2158 1.6696 27 6 3.7180 0.8210 2.2889 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 6.8160 2.4164 -0.4998 34 1 5.6796 1.0534 -0.3309 35 1 7.6847 0.4979 -1.7534 36 1 6.1411 0.3290 -2.6240 37 1 7.9721 2.7696 -2.7283 38 1 7.8389 1.5270 -3.9954 39 1 5.7276 4.3544 -5.2172 40 1 7.3208 4.4382 -4.4279 41 1 7.2073 2.0648 -5.9546 42 1 8.6731 1.2129 -8.8274 43 1 4.4559 3.9764 -3.0818 44 1 6.0172 4.3242 -2.2952 45 1 5.0852 2.0291 1.1436 46 1 2.2993 3.0644 1.8348 47 1 3.8311 3.5616 2.5927 48 1 3.5104 3.9619 0.8883 49 1 4.1605 -0.1240 1.9735 50 1 4.1469 1.1221 3.2446 51 1 2.6402 0.6994 2.3965 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752797573.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:34 Heat of formation + Delta-G solvation = -107.564490 kcal Electronic energy + Delta-G solvation = -27576.195229 eV Core-core repulsion = 23895.476957 eV Total energy + Delta-G solvation = -3680.718272 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 3.11 seconds Orbital eigenvalues (eV) -41.70718 -39.62037 -38.42132 -36.70933 -35.84774 -34.31881 -32.95936 -32.09256 -31.75859 -28.73445 -28.07813 -27.08649 -26.11942 -24.49731 -23.68289 -23.20194 -21.81087 -21.11944 -20.20811 -19.21716 -18.19397 -17.86804 -17.19953 -16.82560 -16.57637 -16.11831 -15.77475 -15.52777 -15.40365 -15.24411 -15.16136 -14.86980 -14.58203 -14.16642 -13.92032 -13.74941 -13.59074 -13.35855 -13.25460 -13.19944 -13.04901 -12.92238 -12.82131 -12.77751 -12.31551 -12.17067 -12.12048 -12.08392 -11.96293 -11.87411 -11.74692 -11.65152 -11.51423 -11.39427 -10.95829 -10.93373 -10.27249 -9.68104 -9.01675 -7.97174 -5.25910 1.46068 1.47045 1.51808 1.57270 1.74907 2.54570 2.78460 3.36217 3.40112 3.66344 3.73304 3.77836 3.85152 3.89235 4.01628 4.13846 4.18740 4.25378 4.26980 4.37498 4.39183 4.43004 4.47843 4.52928 4.67204 4.68193 4.76533 4.78807 4.83650 4.84679 4.85910 4.95201 4.95969 5.01381 5.03029 5.15870 5.17525 5.22353 5.25853 5.38031 5.39184 5.44232 5.45470 5.48987 5.50319 6.10900 6.25344 6.40949 7.12623 7.31795 8.06402 8.31085 9.26595 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.023240 B = 0.002715 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.555450 B =10309.331015 C =10574.777826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 O -0.378 6.378 4 C 0.082 3.918 5 H 0.109 0.891 6 C 0.503 3.497 7 O -0.576 6.576 8 N -0.605 5.605 9 C 0.100 3.900 10 C -0.129 4.129 11 C -0.107 4.107 12 C -0.093 4.093 13 H 0.049 0.951 14 C 0.159 3.841 15 N -0.741 5.741 16 C -0.246 4.246 17 H 0.074 0.926 18 C -0.075 4.075 19 N -0.968 5.968 20 Si 0.974 3.026 21 H -0.268 1.268 22 H -0.290 1.290 23 H -0.294 1.294 24 C 0.128 3.872 25 C -0.105 4.105 26 C -0.139 4.139 27 C -0.144 4.144 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.010 0.990 40 H 0.030 0.970 41 H 0.375 0.625 42 H 0.252 0.748 43 H 0.066 0.934 44 H 0.084 0.916 45 H 0.104 0.896 46 H 0.051 0.949 47 H 0.073 0.927 48 H 0.026 0.974 49 H 0.073 0.927 50 H 0.074 0.926 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.727 -6.190 26.557 28.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 O -0.297 6.297 4 C 0.020 3.980 5 H 0.126 0.874 6 C 0.292 3.708 7 O -0.455 6.455 8 N -0.338 5.338 9 C -0.021 4.021 10 C -0.167 4.167 11 C -0.145 4.145 12 C -0.113 4.113 13 H 0.068 0.932 14 C 0.032 3.968 15 N -0.385 5.385 16 C -0.378 4.378 17 H 0.092 0.908 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.803 3.197 21 H -0.192 1.192 22 H -0.217 1.217 23 H -0.221 1.221 24 C 0.005 3.995 25 C -0.123 4.123 26 C -0.196 4.196 27 C -0.201 4.201 28 H 0.112 0.888 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.130 0.870 35 H 0.122 0.878 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.028 0.972 40 H 0.048 0.952 41 H 0.207 0.793 42 H 0.061 0.939 43 H 0.084 0.916 44 H 0.102 0.898 45 H 0.122 0.878 46 H 0.070 0.930 47 H 0.092 0.908 48 H 0.046 0.954 49 H 0.092 0.908 50 H 0.093 0.907 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.295 -5.481 26.275 28.093 hybrid contribution 0.343 0.087 -1.726 1.762 sum -7.951 -5.394 24.550 26.363 Atomic orbital electron populations 1.21756 0.93261 1.03358 1.02356 1.22918 0.96342 0.82624 1.01280 1.88019 1.19482 1.28108 1.94073 1.22139 0.83867 0.97770 0.94197 0.87359 1.21385 0.81664 0.84912 0.82877 1.90678 1.48735 1.45833 1.60215 1.48185 1.07992 1.41045 1.36617 1.22234 0.89296 0.94757 0.95839 1.21928 1.01274 0.97565 0.95929 1.21457 0.96217 0.98482 0.98308 1.21398 0.97617 0.97451 0.94800 0.93228 1.20712 0.94865 0.93691 0.87567 1.42525 1.71729 1.05809 1.18393 1.19667 1.30187 0.91620 0.96294 0.90830 1.25564 1.03040 0.96445 1.01657 1.69820 1.52247 1.06539 1.33307 0.85063 0.77362 0.78155 0.79115 1.19197 1.21677 1.22104 1.21290 0.99690 0.91520 0.86997 1.21651 1.00984 0.97086 0.92606 1.21684 1.01143 0.95999 1.00821 1.21851 1.02270 0.97689 0.98252 0.88776 0.91824 0.93671 0.93346 0.90431 0.88647 0.86975 0.87838 0.92437 0.90938 0.93429 0.97168 0.95227 0.79258 0.93946 0.91559 0.89764 0.87796 0.93029 0.90792 0.95432 0.90843 0.90712 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 10.28 71.98 0.74 -1.51 16 2 C 0.04 0.71 6.07 71.98 0.44 1.15 16 3 O -0.38 -8.80 8.42 -130.23 -1.10 -9.90 16 4 C 0.08 1.59 1.52 29.85 0.05 1.64 16 5 H 0.11 1.55 6.66 -2.39 -0.02 1.54 16 6 C 0.50 14.09 5.87 87.66 0.51 14.61 16 7 O -0.58 -22.15 15.92 15.70 0.25 -21.90 16 8 N -0.60 -14.74 2.98 -819.72 -2.44 -17.18 16 9 C 0.10 1.56 5.20 86.36 0.45 2.01 16 10 C -0.13 -2.49 6.08 30.67 0.19 -2.31 16 11 C -0.11 -3.03 5.06 30.62 0.15 -2.87 16 12 C -0.09 -3.09 2.36 -10.86 -0.03 -3.12 16 13 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 14 C 0.16 6.58 5.66 86.38 0.49 7.07 16 15 N -0.74 -38.61 5.32 -343.46 -1.83 -40.44 16 16 C -0.25 -14.06 9.99 84.03 0.84 -13.22 16 17 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 18 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 19 N -0.97 -59.72 13.06 21.65 0.28 -59.44 16 20 Si 0.97 46.79 29.55 68.60 2.03 48.81 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 23 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 24 C 0.13 3.75 5.68 86.22 0.49 4.24 16 25 C -0.10 -1.47 2.39 -10.79 -0.03 -1.49 16 26 C -0.14 -2.57 8.81 71.98 0.63 -1.93 16 27 C -0.14 -1.30 8.40 71.98 0.60 -0.70 16 28 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.76 8.06 -2.39 -0.02 0.75 16 32 H 0.08 0.83 6.67 -2.38 -0.02 0.81 16 33 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.11 1.10 4.74 -2.38 -0.01 1.09 16 35 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.05 1.67 7.15 -2.39 -0.02 1.65 16 39 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.37 20.57 6.85 -92.71 -0.63 19.94 16 42 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 43 H 0.07 2.29 7.03 -2.39 -0.02 2.27 16 44 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.10 1.09 5.96 -2.39 -0.01 1.07 16 46 H 0.05 1.08 7.75 -2.39 -0.02 1.06 16 47 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.03 0.66 7.13 -2.39 -0.02 0.64 16 49 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 50 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 51 H 0.05 0.61 6.73 -2.39 -0.02 0.60 16 Total: -1.00 -76.18 390.29 3.45 -72.72 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.26 Total: 27.65 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 6.00 Total: -0.33 kcal Atomic # 7 Polarization: -113.07 SS G_CDS: -3.99 Total: -117.06 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -0.85 Total: -31.80 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.81 kcal Total: -76.18 3.45 -72.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752797573.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.841 kcal (2) G-P(sol) polarization free energy of solvation -76.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.12 seconds