Wall clock time and date at job start Tue Mar 31 2020 10:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00071 * 2 1 4 4 H 1.09006 * 109.46978 * 330.00144 * 3 2 1 5 5 C 1.52999 * 109.47106 * 90.00137 * 3 2 1 6 6 C 1.52999 * 109.47141 * 180.02562 * 5 3 2 7 7 C 1.52990 * 109.47251 * 299.99820 * 6 5 3 8 8 C 1.53007 * 109.47091 * 60.00440 * 7 6 5 9 9 H 1.08998 * 109.47104 * 59.99702 * 8 7 6 10 10 C 1.53004 * 109.47104 * 180.02562 * 8 7 6 11 11 C 1.50699 * 109.46843 * 294.99619 * 10 8 7 12 12 O 1.21283 * 120.00005 * 0.02562 * 11 10 8 13 13 N 1.34777 * 119.99772 * 180.02562 * 11 10 8 14 14 C 1.46506 * 119.99873 * 359.97438 * 13 11 10 15 15 C 1.46498 * 119.99828 * 180.27730 * 13 11 10 16 16 C 1.52999 * 109.47070 * 269.71859 * 15 13 11 17 17 C 1.52994 * 109.47299 * 180.02562 * 16 15 13 18 18 N 1.46503 * 109.47408 * 180.02562 * 17 16 15 19 19 C 1.36933 * 120.00448 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99725 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00095 * 179.97438 * 19 18 17 22 22 N 1.31617 * 120.00362 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99877 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47170 * 90.00442 * 23 21 19 25 25 H 1.48501 * 109.47002 * 210.00326 * 23 21 19 26 26 H 1.48496 * 109.47488 * 330.00047 * 23 21 19 27 27 C 1.52997 * 109.47525 * 210.00385 * 3 2 1 28 28 H 1.08997 * 109.47172 * 59.99894 * 1 2 3 29 29 H 1.09004 * 109.47011 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47161 * 299.99690 * 1 2 3 31 31 H 1.09001 * 109.46729 * 300.00223 * 5 3 2 32 32 H 1.08998 * 109.46866 * 60.00118 * 5 3 2 33 33 H 1.08998 * 109.47183 * 60.00264 * 6 5 3 34 34 H 1.09006 * 109.46848 * 179.97438 * 6 5 3 35 35 H 1.08998 * 109.47390 * 300.00317 * 7 6 5 36 36 H 1.08998 * 109.47285 * 179.97438 * 7 6 5 37 37 H 1.08999 * 109.46770 * 174.99315 * 10 8 7 38 38 H 1.08997 * 109.46991 * 54.99851 * 10 8 7 39 39 H 1.08999 * 109.46892 * 90.00594 * 14 13 11 40 40 H 1.09000 * 109.46803 * 209.99767 * 14 13 11 41 41 H 1.09000 * 109.47214 * 330.00561 * 14 13 11 42 42 H 1.08993 * 109.47575 * 29.72405 * 15 13 11 43 43 H 1.09001 * 109.46870 * 149.72361 * 15 13 11 44 44 H 1.09002 * 109.47116 * 300.00653 * 16 15 13 45 45 H 1.09001 * 109.47317 * 59.99875 * 16 15 13 46 46 H 1.08997 * 109.47609 * 299.99860 * 17 16 15 47 47 H 1.09001 * 109.46807 * 60.00401 * 17 16 15 48 48 H 0.97001 * 119.99888 * 0.02562 * 18 17 16 49 49 H 0.97000 * 120.00401 * 179.97438 * 22 21 19 50 50 H 1.08997 * 109.47492 * 59.99760 * 27 3 2 51 51 H 1.09006 * 109.46796 * 299.99871 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 2.8394 3.1693 1.4425 7 6 4.1879 3.1277 0.7211 8 6 3.9805 2.6619 -0.7215 9 1 3.3149 3.3556 -1.2351 10 6 5.3292 2.6197 -1.4427 11 6 5.8849 4.0163 -1.5508 12 8 5.2636 4.9531 -1.0954 13 7 7.0723 4.2244 -2.1536 14 6 7.8229 3.0926 -2.7032 15 6 7.6153 5.5813 -2.2533 16 6 7.1376 6.2275 -3.5552 17 6 7.7052 7.6444 -3.6597 18 7 7.2472 8.2633 -4.9061 19 6 7.6305 9.5405 -5.2175 20 1 8.2707 10.0914 -4.5445 21 6 7.1970 10.1267 -6.3987 22 7 6.4171 9.4551 -7.2192 23 14 7.7204 11.8687 -6.8239 24 1 8.9866 11.8299 -7.5988 25 1 6.6619 12.5190 -7.6374 26 1 7.9288 12.6422 -5.5735 27 6 3.3588 1.2633 -0.7213 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 1.2568 1.8013 1.9563 32 1 2.8830 1.0774 1.9562 33 1 2.1738 3.8630 0.9289 34 1 2.9868 3.5013 2.4702 35 1 4.8536 2.4340 1.2348 36 1 4.6307 4.1237 0.7207 37 1 5.1943 2.2040 -2.4412 38 1 6.0228 1.9952 -0.8798 39 1 7.5305 2.9324 -3.7409 40 1 8.8905 3.3074 -2.6557 41 1 7.6063 2.1963 -2.1221 42 1 7.2708 6.1738 -1.4058 43 1 8.7045 5.5381 -2.2475 44 1 7.4822 5.6349 -4.4027 45 1 6.0484 6.2706 -3.5611 46 1 7.3609 8.2372 -2.8123 47 1 8.7943 7.6007 -3.6541 48 1 6.6719 7.7686 -5.5104 49 1 6.1138 9.8649 -8.0444 50 1 3.2111 0.9314 -1.7489 51 1 4.0242 0.5694 -0.2075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754376421.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:06 Heat of formation + Delta-G solvation = -96.630159 kcal Electronic energy + Delta-G solvation = -26241.855835 eV Core-core repulsion = 22561.611711 eV Total energy + Delta-G solvation = -3680.244124 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.36949 -39.21900 -36.97768 -35.97539 -34.79181 -32.89346 -32.05282 -30.42274 -29.83979 -27.58349 -26.89987 -26.74849 -24.89776 -22.87414 -22.66697 -21.62824 -20.86808 -20.12887 -19.03405 -17.12831 -17.02305 -16.77600 -16.12123 -15.82981 -15.73487 -15.40979 -14.90511 -14.50838 -14.41183 -14.29510 -13.82624 -13.55813 -13.26401 -13.24115 -13.06276 -12.96898 -12.70550 -12.44945 -12.29282 -12.12308 -11.91785 -11.86252 -11.70348 -11.26812 -11.21211 -10.90992 -10.82832 -10.74167 -10.68747 -10.65045 -10.61500 -10.35056 -10.05144 -9.75509 -9.70925 -9.56029 -8.83281 -8.62318 -6.87774 -5.72422 -3.01003 2.64959 2.96503 3.42035 3.46241 3.50946 3.53229 4.34805 4.40955 4.46226 4.63200 4.76154 4.77355 4.85633 4.93812 4.96047 5.03444 5.07647 5.16389 5.17053 5.23054 5.29925 5.32679 5.33566 5.34282 5.45040 5.49137 5.51443 5.57239 5.60478 5.70954 5.74072 5.74450 5.90186 5.94749 5.96405 6.03100 6.12456 6.24137 6.28577 6.34264 6.43113 6.58079 6.89742 6.90388 6.93050 7.37916 7.73502 8.21077 8.46599 9.57286 10.16284 10.50893 11.50725 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.019905 B = 0.002127 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.313939 B =13163.963967 C =13668.662265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.089 3.911 4 H 0.061 0.939 5 C -0.139 4.139 6 C -0.115 4.115 7 C -0.122 4.122 8 C -0.069 4.069 9 H 0.081 0.919 10 C -0.134 4.134 11 C 0.511 3.489 12 O -0.531 6.531 13 N -0.617 5.617 14 C 0.077 3.923 15 C 0.119 3.881 16 C -0.138 4.138 17 C 0.156 3.844 18 N -0.733 5.733 19 C -0.238 4.238 20 H 0.071 0.929 21 C -0.017 4.017 22 N -0.935 5.935 23 Si 0.908 3.092 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.110 4.110 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.020 0.980 47 H 0.018 0.982 48 H 0.383 0.617 49 H 0.255 0.745 50 H 0.069 0.931 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.611 -23.217 17.052 29.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C 0.032 3.968 4 H 0.079 0.921 5 C -0.177 4.177 6 C -0.153 4.153 7 C -0.159 4.159 8 C -0.088 4.088 9 H 0.100 0.900 10 C -0.174 4.174 11 C 0.299 3.701 12 O -0.408 6.408 13 N -0.351 5.351 14 C -0.066 4.066 15 C -0.004 4.004 16 C -0.177 4.177 17 C 0.028 3.972 18 N -0.377 5.377 19 C -0.369 4.369 20 H 0.089 0.911 21 C -0.213 4.213 22 N -0.584 5.584 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.148 4.148 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.038 0.962 47 H 0.036 0.964 48 H 0.217 0.783 49 H 0.064 0.936 50 H 0.088 0.912 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.748 -22.718 17.310 29.134 hybrid contribution -0.075 0.918 -0.669 1.139 sum -5.823 -21.799 16.641 28.037 Atomic orbital electron populations 1.22771 0.81258 1.02566 0.99979 1.87889 1.19506 1.28190 1.95109 1.22145 0.94915 0.84134 0.95632 0.92081 1.22043 1.01160 0.97616 0.96910 1.21458 0.97159 0.95925 1.00742 1.21747 0.97030 1.03108 0.94019 1.20879 0.95154 0.96016 0.96741 0.90048 1.21745 0.98058 0.94757 1.02860 1.20647 0.80591 0.91420 0.77463 1.90691 1.58129 1.44578 1.47366 1.47944 1.20744 1.08424 1.57974 1.21822 0.97007 0.88759 0.99051 1.21495 0.97939 0.81603 0.99344 1.22040 1.01750 0.97383 0.96508 1.20544 0.95991 0.90367 0.90292 1.42356 1.60013 1.14856 1.20523 1.19253 1.24412 0.90528 1.02713 0.91145 1.24761 1.00461 0.98601 0.97431 1.69666 1.39023 1.37072 1.12606 0.86162 0.77553 0.84396 0.77937 1.21749 1.21770 1.20747 1.21643 0.95214 0.97138 1.00774 0.94015 0.89779 0.94156 0.92192 0.91241 0.91778 0.91732 0.92547 0.89494 0.88831 0.88969 0.92378 0.90886 0.91188 0.89844 0.90677 0.92081 0.91644 0.96244 0.96446 0.78340 0.93551 0.91230 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 101.05 1.09 1.30 16 2 O -0.39 -3.69 10.35 -35.23 -0.36 -4.05 16 3 C 0.09 0.78 2.61 -26.73 -0.07 0.71 16 4 H 0.06 0.53 7.79 -51.93 -0.40 0.12 16 5 C -0.14 -1.14 5.54 -26.73 -0.15 -1.29 16 6 C -0.12 -1.01 5.92 -26.74 -0.16 -1.17 16 7 C -0.12 -1.18 4.94 -26.73 -0.13 -1.31 16 8 C -0.07 -0.64 1.84 -90.59 -0.17 -0.81 16 9 H 0.08 0.91 7.96 -51.93 -0.41 0.50 16 10 C -0.13 -1.17 3.73 -27.88 -0.10 -1.28 16 11 C 0.51 6.45 7.39 -10.99 -0.08 6.37 16 12 O -0.53 -8.73 13.54 5.55 0.08 -8.66 16 13 N -0.62 -7.26 2.87 -181.57 -0.52 -7.78 16 14 C 0.08 0.61 10.29 59.85 0.62 1.22 16 15 C 0.12 1.63 5.45 -4.04 -0.02 1.61 16 16 C -0.14 -2.39 5.65 -26.73 -0.15 -2.54 16 17 C 0.16 3.30 6.26 -4.04 -0.03 3.28 16 18 N -0.73 -19.63 5.60 -59.91 -0.34 -19.97 16 19 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 20 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 21 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 22 N -0.93 -29.17 13.06 55.49 0.72 -28.45 16 23 Si 0.91 22.99 29.55 -169.99 -5.02 17.96 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 27 C -0.11 -0.91 4.86 -26.71 -0.13 -1.04 16 28 H 0.04 0.26 8.08 -51.93 -0.42 -0.16 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.04 0.24 7.87 -51.93 -0.41 -0.17 16 31 H 0.06 0.46 7.87 -51.93 -0.41 0.05 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 1.06 5.95 -51.93 -0.31 0.75 16 37 H 0.09 0.70 8.11 -51.93 -0.42 0.28 16 38 H 0.09 0.62 7.40 -51.93 -0.38 0.23 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.50 7.89 -51.93 -0.41 0.10 16 41 H 0.07 0.39 6.44 -51.93 -0.33 0.05 16 42 H 0.08 1.26 7.42 -51.93 -0.39 0.87 16 43 H 0.07 0.88 7.89 -51.93 -0.41 0.47 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.38 10.77 7.67 -40.82 -0.31 10.46 16 49 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 50 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 399.26 15.07 6.02 6.02 Total: -1.00 -34.44 399.26 -8.79 -43.23 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -9.64 Total: 4.31 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 0.27 Total: -2.62 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: -0.13 Total: -56.19 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.29 Total: -12.71 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.44 -8.79 -43.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754376421.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.397 kcal (2) G-P(sol) polarization free energy of solvation -34.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds