Wall clock time and date at job start Tue Mar 31 2020 10:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42904 * 109.47343 * 2 1 4 4 C 1.42900 * 114.00250 * 184.80459 * 3 2 1 5 5 H 1.09000 * 109.46791 * 14.60376 * 4 3 2 6 6 C 1.50702 * 109.46985 * 134.60196 * 4 3 2 7 7 O 1.21282 * 119.99998 * 15.93376 * 6 4 3 8 8 N 1.34772 * 120.00060 * 195.93256 * 6 4 3 9 9 C 1.46928 * 120.63414 * 176.23967 * 8 6 4 10 10 C 1.53195 * 108.77295 * 126.41437 * 9 8 6 11 11 C 1.53036 * 109.31403 * 54.64003 * 10 9 8 12 12 C 1.52995 * 109.46305 * 178.62889 * 11 10 9 13 13 N 1.46493 * 109.46429 * 58.65241 * 11 10 9 14 14 C 1.36930 * 120.00585 * 179.97438 * 13 11 10 15 15 H 1.08000 * 119.99780 * 0.02562 * 14 13 11 16 16 C 1.38813 * 120.00243 * 179.97438 * 14 13 11 17 17 N 1.31625 * 119.99971 * 179.97438 * 16 14 13 18 18 Si 1.86793 * 120.00128 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47175 * 269.99982 * 18 16 14 20 20 H 1.48504 * 109.47051 * 29.99680 * 18 16 14 21 21 H 1.48503 * 109.47448 * 149.99701 * 18 16 14 22 22 C 1.53046 * 109.52782 * 298.63777 * 11 10 9 23 23 C 1.46935 * 120.62833 * 356.26892 * 8 6 4 24 24 C 1.52994 * 109.47314 * 254.60400 * 4 3 2 25 25 C 1.53005 * 109.46967 * 305.54386 * 24 4 3 26 26 C 1.53003 * 109.47199 * 65.54045 * 24 4 3 27 27 H 1.08995 * 109.46741 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47238 * 300.00339 * 1 2 3 29 29 H 1.09000 * 109.47030 * 60.00188 * 1 2 3 30 30 H 1.09000 * 109.47704 * 239.99913 * 2 1 3 31 31 H 1.09000 * 109.47509 * 119.99581 * 2 1 3 32 32 H 1.08995 * 109.58040 * 6.63218 * 9 8 6 33 33 H 1.08991 * 109.58705 * 246.20122 * 9 8 6 34 34 H 1.09007 * 109.49963 * 294.68518 * 10 9 8 35 35 H 1.08996 * 109.52370 * 174.60856 * 10 9 8 36 36 H 1.09009 * 109.46911 * 300.02978 * 12 11 10 37 37 H 1.09002 * 109.47187 * 60.01979 * 12 11 10 38 38 H 1.08999 * 109.47757 * 180.02562 * 12 11 10 39 39 H 0.97004 * 120.00105 * 359.97438 * 13 11 10 40 40 H 0.96995 * 119.99632 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.49868 * 181.30948 * 22 11 10 42 42 H 1.08994 * 109.49998 * 301.41260 * 22 11 10 43 43 H 1.08994 * 109.58746 * 353.36845 * 23 8 6 44 44 H 1.09000 * 109.58693 * 113.79945 * 23 8 6 45 45 H 1.08994 * 109.47577 * 185.54495 * 24 4 3 46 46 H 1.09001 * 109.46921 * 64.50472 * 25 24 4 47 47 H 1.09007 * 109.46906 * 184.50298 * 25 24 4 48 48 H 1.09004 * 109.46974 * 304.50209 * 25 24 4 49 49 H 1.08999 * 109.46898 * 59.94602 * 26 24 4 50 50 H 1.09000 * 109.47199 * 179.97438 * 26 24 4 51 51 H 1.08995 * 109.47235 * 299.94309 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4266 1.4617 -0.1093 5 1 3.8444 0.5071 -0.4292 6 6 3.7685 2.5242 -1.1219 7 8 2.9225 3.3167 -1.4785 8 7 5.0144 2.5938 -1.6311 9 6 5.3415 3.5707 -2.6787 10 6 6.5536 4.3912 -2.2267 11 6 7.7015 3.4441 -1.8700 12 6 8.9250 4.2613 -1.4507 13 7 8.0384 2.6245 -3.0366 14 6 9.0433 1.6979 -2.9552 15 1 9.5872 1.5709 -2.0309 16 6 9.3621 0.9209 -4.0605 17 7 10.3284 0.0306 -3.9824 18 14 8.4209 1.1400 -5.6590 19 1 7.2462 0.2316 -5.6703 20 1 7.9598 2.5470 -5.7731 21 1 9.3085 0.8156 -6.8046 22 6 7.2749 2.5355 -0.7147 23 6 6.0713 1.6938 -1.1495 24 6 4.0136 1.8452 1.2505 25 6 3.3266 3.1125 1.7633 26 6 3.7865 0.7042 2.2442 27 1 -0.3632 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 4.4909 4.2332 -2.8389 33 1 5.5793 3.0474 -3.6048 34 1 6.2859 4.9840 -1.3519 35 1 6.8661 5.0541 -3.0335 36 1 9.2293 4.9082 -2.2736 37 1 8.6745 4.8712 -0.5827 38 1 9.7430 3.5869 -1.1970 39 1 7.5497 2.7383 -3.8667 40 1 10.5514 -0.5120 -4.7548 41 1 8.1008 1.8770 -0.4457 42 1 7.0004 3.1457 0.1457 43 1 5.7023 1.1181 -0.3008 44 1 6.3686 1.0176 -1.9510 45 1 5.0829 2.0286 1.1460 46 1 2.2716 2.9061 1.9440 47 1 3.7988 3.4310 2.6927 48 1 3.4199 3.9031 1.0188 49 1 4.2750 -0.1988 1.8783 50 1 4.2051 0.9773 3.2128 51 1 2.7171 0.5216 2.3495 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755128118.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:49 Heat of formation + Delta-G solvation = -75.417875 kcal Electronic energy + Delta-G solvation = -28802.001544 eV Core-core repulsion = 25122.677253 eV Total energy + Delta-G solvation = -3679.324291 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.53556 -38.68220 -37.38925 -35.11596 -34.43254 -32.36123 -31.32067 -30.92002 -29.78040 -28.27130 -27.28562 -26.76628 -23.74175 -23.07831 -22.89662 -22.57379 -20.73216 -19.78542 -18.06728 -17.80186 -17.06597 -16.77788 -16.18871 -15.52957 -15.09531 -14.62204 -14.55643 -14.29955 -14.08787 -13.82148 -13.58360 -13.42528 -13.29619 -12.75422 -12.63760 -12.57459 -12.39156 -12.22323 -12.17991 -12.17288 -11.93721 -11.47963 -11.41276 -11.30649 -11.23828 -11.04375 -11.03297 -10.89207 -10.85593 -10.76364 -10.39435 -10.20686 -9.92241 -9.80827 -9.51699 -9.16458 -8.99248 -8.32053 -7.31338 -5.81849 -3.17180 2.76050 2.92209 3.32421 3.35785 3.42069 3.76957 4.49338 4.54211 4.59881 4.74720 4.88483 4.99962 5.03467 5.06982 5.14690 5.19827 5.20618 5.30737 5.41677 5.44786 5.45642 5.50886 5.58080 5.60390 5.65962 5.73302 5.73991 5.82546 5.90453 5.93269 5.95420 5.95676 6.03305 6.14263 6.15595 6.28901 6.31982 6.33486 6.39221 6.50482 6.62409 6.69150 6.91161 6.97602 7.05252 7.65655 7.94088 8.37444 8.37763 9.15626 9.88725 10.08775 11.36304 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.015692 B = 0.004296 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.882183 B = 6515.859652 C = 6951.423572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 O -0.352 6.352 4 C 0.079 3.921 5 H 0.084 0.916 6 C 0.511 3.489 7 O -0.533 6.533 8 N -0.601 5.601 9 C 0.116 3.884 10 C -0.132 4.132 11 C 0.204 3.796 12 C -0.150 4.150 13 N -0.743 5.743 14 C -0.237 4.237 15 H 0.092 0.908 16 C 0.007 3.993 17 N -0.933 5.933 18 Si 0.877 3.123 19 H -0.286 1.286 20 H -0.277 1.277 21 H -0.292 1.292 22 C -0.133 4.133 23 C 0.108 3.892 24 C -0.110 4.110 25 C -0.139 4.139 26 C -0.148 4.148 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.038 0.962 38 H 0.061 0.939 39 H 0.360 0.640 40 H 0.259 0.741 41 H 0.082 0.918 42 H 0.052 0.948 43 H 0.072 0.928 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.063 0.937 47 H 0.052 0.948 48 H 0.056 0.944 49 H 0.055 0.945 50 H 0.061 0.939 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.147 2.195 11.342 18.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.270 6.270 4 C 0.018 3.982 5 H 0.102 0.898 6 C 0.298 3.702 7 O -0.410 6.410 8 N -0.336 5.336 9 C -0.006 4.006 10 C -0.171 4.171 11 C 0.114 3.886 12 C -0.209 4.209 13 N -0.387 5.387 14 C -0.366 4.366 15 H 0.110 0.890 16 C -0.189 4.189 17 N -0.581 5.581 18 Si 0.708 3.292 19 H -0.213 1.213 20 H -0.204 1.204 21 H -0.218 1.218 22 C -0.173 4.173 23 C -0.014 4.014 24 C -0.129 4.129 25 C -0.196 4.196 26 C -0.205 4.205 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.194 0.806 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.082 0.918 47 H 0.071 0.929 48 H 0.075 0.925 49 H 0.074 0.926 50 H 0.080 0.920 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.546 2.621 11.225 18.559 hybrid contribution -0.163 -0.314 -1.360 1.405 sum -14.709 2.308 9.865 17.860 Atomic orbital electron populations 1.21716 0.93632 1.02048 1.03255 1.22706 0.95821 0.83946 1.00219 1.88016 1.18964 1.25903 1.94100 1.22012 0.83511 0.98075 0.94617 0.89790 1.20499 0.82080 0.85715 0.81887 1.90659 1.47761 1.41733 1.60839 1.48117 1.09391 1.36958 1.39102 1.21533 0.97899 0.91247 0.89932 1.22136 0.95117 0.98036 1.01815 1.19476 0.91742 0.89583 0.87848 1.22188 0.99523 0.99662 0.99523 1.42901 1.42136 1.44225 1.09392 1.18964 1.08785 1.09979 0.98901 0.88984 1.24619 0.98343 0.98563 0.97357 1.69687 1.32103 1.26110 1.30219 0.86678 0.79679 0.77610 0.85280 1.21253 1.20373 1.21846 1.22271 0.97507 0.99333 0.98171 1.21880 0.87200 0.92429 0.99923 1.21595 1.00704 0.97225 0.93348 1.21689 1.01025 0.96353 1.00552 1.21892 1.02152 0.97511 0.98983 0.91188 0.91857 0.91762 0.93369 0.92940 0.89600 0.91437 0.91378 0.90806 0.93163 0.94329 0.91983 0.80593 0.93115 0.89994 0.92960 0.90954 0.89374 0.89282 0.91838 0.92883 0.92466 0.92566 0.92005 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.94 16 2 C 0.05 0.51 6.10 37.16 0.23 0.74 16 3 O -0.35 -4.78 8.45 -54.62 -0.46 -5.24 16 4 C 0.08 1.04 1.49 -27.89 -0.04 1.00 16 5 H 0.08 1.00 6.69 -51.93 -0.35 0.65 16 6 C 0.51 8.26 6.01 -10.99 -0.07 8.19 16 7 O -0.53 -10.34 15.79 -13.83 -0.22 -10.56 16 8 N -0.60 -9.41 2.97 -172.78 -0.51 -9.92 16 9 C 0.12 1.85 6.17 -3.71 -0.02 1.83 16 10 C -0.13 -2.01 4.96 -26.61 -0.13 -2.14 16 11 C 0.20 3.51 0.74 -131.78 -0.10 3.41 16 12 C -0.15 -2.51 8.44 37.16 0.31 -2.19 16 13 N -0.74 -15.69 3.94 -47.20 -0.19 -15.88 16 14 C -0.24 -5.99 9.16 -15.06 -0.14 -6.13 16 15 H 0.09 2.50 6.93 -52.49 -0.36 2.14 16 16 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 17 N -0.93 -27.86 13.97 55.49 0.78 -27.09 16 18 Si 0.88 21.23 27.73 -169.99 -4.71 16.51 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.36 6.52 56.52 0.37 -6.00 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 22 C -0.13 -2.08 4.70 -26.62 -0.13 -2.20 16 23 C 0.11 1.63 5.34 -3.71 -0.02 1.61 16 24 C -0.11 -1.23 2.32 -90.62 -0.21 -1.44 16 25 C -0.14 -1.64 8.80 37.16 0.33 -1.31 16 26 C -0.15 -1.33 8.51 37.16 0.32 -1.02 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.49 8.04 -51.93 -0.42 0.07 16 31 H 0.05 0.45 6.38 -51.93 -0.33 0.12 16 32 H 0.09 1.38 7.00 -51.93 -0.36 1.01 16 33 H 0.07 1.14 6.94 -51.93 -0.36 0.78 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.05 0.86 8.14 -51.92 -0.42 0.43 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 1.15 7.27 -51.93 -0.38 0.77 16 39 H 0.36 7.75 4.32 -40.82 -0.18 7.58 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 41 H 0.08 1.40 7.31 -51.93 -0.38 1.02 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.92 4.49 -51.93 -0.23 0.68 16 44 H 0.09 1.58 7.74 -51.93 -0.40 1.17 16 45 H 0.09 1.00 6.22 -51.93 -0.32 0.67 16 46 H 0.06 0.77 7.70 -51.93 -0.40 0.37 16 47 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.80 7.11 -51.93 -0.37 0.43 16 49 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 50 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.06 0.54 6.45 -51.93 -0.33 0.21 16 LS Contribution 380.57 15.07 5.74 5.74 Total: -1.00 -30.92 380.57 -7.97 -38.88 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -9.00 Total: 8.05 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 0.62 Total: -0.49 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.08 Total: -52.89 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.68 Total: -15.80 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.71 Total: 16.51 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.92 -7.97 -38.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755128118.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.538 kcal (2) G-P(sol) polarization free energy of solvation -30.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds