Wall clock time and date at job start Tue Mar 31 2020 10:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.47535 * 2 1 4 4 C 1.42896 * 114.00219 * 174.93492 * 3 2 1 5 5 H 1.09002 * 109.47408 * 347.08562 * 4 3 2 6 6 C 1.50703 * 109.47209 * 227.08460 * 4 3 2 7 7 O 1.21276 * 119.99789 * 347.90049 * 6 4 3 8 8 N 1.34778 * 120.00034 * 167.90934 * 6 4 3 9 9 C 1.47025 * 125.64685 * 4.71095 * 8 6 4 10 10 C 1.54324 * 107.26790 * 181.02446 * 9 8 6 11 11 H 1.08994 * 110.72214 * 263.83005 * 10 9 8 12 12 N 1.46507 * 110.71719 * 140.55766 * 10 9 8 13 13 C 1.36937 * 119.99825 * 86.45417 * 12 10 9 14 14 H 1.07997 * 120.00149 * 0.02562 * 13 12 10 15 15 C 1.38815 * 119.99468 * 179.97438 * 13 12 10 16 16 N 1.31616 * 119.99706 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 120.00296 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47320 * 90.00023 * 17 15 13 19 19 H 1.48503 * 109.46846 * 209.99705 * 17 15 13 20 20 H 1.48498 * 109.47255 * 329.99586 * 17 15 13 21 21 C 1.55157 * 102.94137 * 22.19904 * 10 9 8 22 22 C 1.52999 * 111.00926 * 82.56967 * 21 10 9 23 23 C 1.53008 * 111.00003 * 206.38381 * 21 10 9 24 24 C 1.47418 * 125.64746 * 184.41178 * 8 6 4 25 25 C 1.53000 * 109.46970 * 107.08069 * 4 3 2 26 26 C 1.52999 * 109.47359 * 293.98643 * 25 4 3 27 27 C 1.53005 * 109.46949 * 53.98592 * 25 4 3 28 28 H 1.08997 * 109.47023 * 299.99970 * 1 2 3 29 29 H 1.09000 * 109.47204 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46871 * 59.99924 * 1 2 3 31 31 H 1.09002 * 109.46871 * 120.00076 * 2 1 3 32 32 H 1.09007 * 109.47079 * 240.00010 * 2 1 3 33 33 H 1.09004 * 109.88252 * 300.44199 * 9 8 6 34 34 H 1.08999 * 109.88024 * 61.61111 * 9 8 6 35 35 H 0.97004 * 119.99385 * 266.45827 * 12 10 9 36 36 H 0.97004 * 120.00388 * 180.02562 * 16 15 13 37 37 H 1.09000 * 109.47038 * 59.99927 * 22 21 10 38 38 H 1.08998 * 109.47385 * 179.97438 * 22 21 10 39 39 H 1.08994 * 109.47116 * 299.99877 * 22 21 10 40 40 H 1.08999 * 109.47194 * 59.99467 * 23 21 10 41 41 H 1.08999 * 109.46476 * 179.97438 * 23 21 10 42 42 H 1.08995 * 109.47061 * 299.99798 * 23 21 10 43 43 H 1.09007 * 110.36293 * 274.73895 * 24 8 6 44 44 H 1.09001 * 110.36992 * 37.05855 * 24 8 6 45 45 H 1.09002 * 109.47093 * 173.98320 * 25 4 3 46 46 H 1.09000 * 109.47177 * 66.73591 * 26 25 4 47 47 H 1.09003 * 109.46736 * 186.73506 * 26 25 4 48 48 H 1.08994 * 109.46953 * 306.73623 * 26 25 4 49 49 H 1.09003 * 109.47293 * 59.99688 * 27 25 4 50 50 H 1.08997 * 109.47351 * 179.97438 * 27 25 4 51 51 H 1.09002 * 109.47001 * 299.99785 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4261 1.4617 0.1152 5 1 3.8456 0.4996 0.4093 6 6 3.7637 2.4966 1.1575 7 8 2.8987 3.2312 1.5850 8 7 5.0270 2.6057 1.6144 9 6 6.1865 1.8515 1.1161 10 6 7.4092 2.2864 1.9513 11 1 7.9715 3.0646 1.4354 12 7 8.2671 1.1374 2.2513 13 6 9.2324 0.7523 1.3596 14 1 9.3614 1.2959 0.4353 15 6 10.0456 -0.3361 1.6441 16 7 10.9730 -0.7066 0.7868 17 14 9.8228 -1.2758 3.2431 18 1 8.8455 -2.3751 3.0392 19 1 11.1267 -1.8453 3.6683 20 1 9.3193 -0.3541 4.2929 21 6 6.7640 2.8431 3.2479 22 6 6.4282 1.7126 4.2226 23 6 7.6716 3.8822 3.9095 24 6 5.4761 3.5056 2.6923 25 6 4.0148 1.8842 -1.2323 26 6 3.8026 0.7658 -2.2547 27 6 3.3176 3.1571 -1.7168 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 6.0143 0.7823 1.2399 34 1 6.3549 2.0827 0.0643 35 1 8.1513 0.6494 3.0816 36 1 11.5411 -1.4673 0.9854 37 1 7.3407 1.1785 4.4878 38 1 5.9778 2.1307 5.1228 39 1 5.7275 1.0232 3.7518 40 1 7.8400 4.7093 3.2199 41 1 7.1952 4.2562 4.8157 42 1 8.6261 3.4215 4.1640 43 1 5.6978 4.4951 2.2925 44 1 4.7173 3.5718 3.4720 45 1 5.0819 2.0751 -1.1189 46 1 2.7372 0.6562 -2.4574 47 1 4.3246 1.0145 -3.1787 48 1 4.1947 -0.1698 -1.8562 49 1 3.4687 3.9538 -0.9885 50 1 3.7372 3.4583 -2.6766 51 1 2.2505 2.9661 -1.8303 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755759120.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:28 Heat of formation + Delta-G solvation = -74.359368 kcal Electronic energy + Delta-G solvation = -28481.837681 eV Core-core repulsion = 24802.559291 eV Total energy + Delta-G solvation = -3679.278390 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.46589 -38.88145 -37.33787 -34.98459 -34.22463 -33.15595 -31.24778 -31.18567 -28.23644 -27.82309 -27.21588 -27.16846 -25.39629 -23.80845 -22.87560 -21.54266 -20.49472 -19.39058 -18.92953 -17.69898 -16.93268 -16.65932 -16.19884 -15.75026 -15.25085 -14.73599 -14.51562 -14.41380 -14.11477 -13.79156 -13.53864 -13.40062 -13.08423 -12.71374 -12.67149 -12.58192 -12.49336 -12.29082 -12.19745 -12.10116 -12.04979 -11.71708 -11.50413 -11.43953 -11.38647 -11.18253 -11.06265 -10.97395 -10.76608 -10.64196 -10.54446 -10.36106 -10.02790 -9.97490 -9.65565 -9.23680 -9.04623 -8.37860 -7.44759 -5.89802 -3.27425 2.76158 2.88129 3.26449 3.29148 3.36450 3.80245 4.46423 4.47473 4.67983 4.73067 4.82891 4.92203 4.93391 4.97937 5.07367 5.11677 5.23340 5.30218 5.36559 5.39820 5.49531 5.55109 5.57632 5.60829 5.65943 5.71154 5.76442 5.78819 5.82892 5.86049 5.88390 5.94933 5.98012 6.02261 6.10065 6.13188 6.18344 6.23294 6.29339 6.38691 6.42852 6.47571 6.52217 6.69674 7.05363 7.71577 7.85630 8.29097 8.35023 9.06064 9.78175 9.96710 11.27906 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.013196 B = 0.004401 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.299985 B = 6360.740345 C = 7109.088388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 O -0.352 6.352 4 C 0.083 3.917 5 H 0.085 0.915 6 C 0.525 3.475 7 O -0.533 6.533 8 N -0.612 5.612 9 C 0.070 3.930 10 C 0.187 3.813 11 H 0.075 0.925 12 N -0.736 5.736 13 C -0.253 4.253 14 H 0.092 0.908 15 C 0.012 3.988 16 N -0.928 5.928 17 Si 0.878 3.122 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.276 1.276 21 C -0.090 4.090 22 C -0.135 4.135 23 C -0.130 4.130 24 C 0.121 3.879 25 C -0.110 4.110 26 C -0.146 4.146 27 C -0.139 4.139 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.366 0.634 36 H 0.261 0.739 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.090 0.910 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.056 0.944 49 H 0.053 0.947 50 H 0.053 0.947 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.296 4.054 -0.402 15.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.026 4.026 3 O -0.270 6.270 4 C 0.022 3.978 5 H 0.103 0.897 6 C 0.312 3.688 7 O -0.409 6.409 8 N -0.348 5.348 9 C -0.055 4.055 10 C 0.075 3.925 11 H 0.093 0.907 12 N -0.380 5.380 13 C -0.382 4.382 14 H 0.110 0.890 15 C -0.185 4.185 16 N -0.575 5.575 17 Si 0.708 3.292 18 H -0.210 1.210 19 H -0.215 1.215 20 H -0.202 1.202 21 C -0.091 4.091 22 C -0.193 4.193 23 C -0.188 4.188 24 C -0.002 4.002 25 C -0.129 4.129 26 C -0.203 4.203 27 C -0.196 4.196 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.202 0.798 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.108 0.892 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.075 0.925 49 H 0.072 0.928 50 H 0.072 0.928 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.785 4.541 -0.421 16.431 hybrid contribution 0.222 -1.190 1.056 1.606 sum -15.563 3.351 0.635 15.933 Atomic orbital electron populations 1.21716 0.93645 1.02033 1.03220 1.22681 0.95768 0.83912 1.00221 1.87998 1.19059 1.25959 1.94001 1.21946 0.83423 0.98079 0.94362 0.89719 1.20257 0.81032 0.84955 0.82523 1.90671 1.46900 1.44171 1.59162 1.48471 1.07277 1.41932 1.37090 1.23354 0.86267 0.96532 0.99370 1.21171 0.89078 0.90531 0.91684 0.90698 1.42865 1.39152 1.33638 1.22321 1.19076 1.08235 1.10857 1.00043 0.88973 1.24647 0.97820 0.98427 0.97577 1.69688 1.22925 1.29071 1.35804 0.86673 0.77394 0.80442 0.84680 1.20984 1.21542 1.20237 1.22060 0.94448 0.96220 0.96412 1.21690 1.01644 0.97860 0.98078 1.21658 0.99565 0.97720 0.99817 1.22311 0.95527 0.92914 0.89437 1.21566 1.00867 0.97122 0.93302 1.21852 1.01966 0.97701 0.98793 1.21693 1.01199 0.96191 1.00542 0.91794 0.91203 0.91849 0.93450 0.92939 0.91006 0.91467 0.79773 0.92893 0.91745 0.92781 0.92620 0.92417 0.92944 0.91448 0.91432 0.90868 0.89221 0.92272 0.91976 0.92521 0.92816 0.92764 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.28 37.16 0.38 -0.99 16 2 C 0.05 0.55 6.17 37.16 0.23 0.78 16 3 O -0.35 -4.96 8.36 -54.85 -0.46 -5.42 16 4 C 0.08 1.16 1.73 -27.88 -0.05 1.11 16 5 H 0.08 1.11 7.30 -51.93 -0.38 0.73 16 6 C 0.52 8.56 6.20 -10.98 -0.07 8.50 16 7 O -0.53 -10.37 16.84 -14.05 -0.24 -10.61 16 8 N -0.61 -9.35 3.31 -170.38 -0.56 -9.91 16 9 C 0.07 1.11 5.48 -3.06 -0.02 1.10 16 10 C 0.19 3.21 2.85 -66.09 -0.19 3.02 16 11 H 0.08 1.32 8.02 -51.93 -0.42 0.91 16 12 N -0.74 -15.56 4.88 -51.65 -0.25 -15.81 16 13 C -0.25 -6.49 10.46 -15.06 -0.16 -6.65 16 14 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 15 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 16 N -0.93 -27.58 13.97 55.49 0.78 -26.80 16 17 Si 0.88 20.76 27.74 -169.99 -4.71 16.04 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.09 6.52 56.52 0.37 -5.72 16 21 C -0.09 -1.30 0.87 -152.24 -0.13 -1.43 16 22 C -0.14 -1.97 7.94 37.16 0.30 -1.68 16 23 C -0.13 -1.69 8.68 37.16 0.32 -1.36 16 24 C 0.12 1.72 5.83 -2.41 -0.01 1.71 16 25 C -0.11 -1.37 2.66 -90.62 -0.24 -1.61 16 26 C -0.15 -1.55 8.31 37.16 0.31 -1.24 16 27 C -0.14 -1.74 8.81 37.16 0.33 -1.42 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.51 8.05 -51.93 -0.42 0.09 16 32 H 0.05 0.50 6.74 -51.93 -0.35 0.15 16 33 H 0.07 1.20 7.84 -51.93 -0.41 0.79 16 34 H 0.07 1.03 6.01 -51.93 -0.31 0.72 16 35 H 0.37 7.70 3.12 -40.82 -0.13 7.57 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.06 1.03 6.34 -51.93 -0.33 0.70 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.84 7.91 -51.93 -0.41 0.43 16 40 H 0.06 0.69 8.07 -51.93 -0.42 0.27 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.07 0.91 7.99 -51.92 -0.41 0.49 16 44 H 0.07 1.06 8.00 -51.93 -0.42 0.64 16 45 H 0.09 1.16 5.47 -51.93 -0.28 0.88 16 46 H 0.06 0.60 7.16 -51.93 -0.37 0.23 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 49 H 0.05 0.76 7.42 -51.93 -0.39 0.38 16 50 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.06 0.83 7.54 -51.93 -0.39 0.44 16 LS Contribution 390.22 15.07 5.88 5.88 Total: -1.00 -30.72 390.22 -7.90 -38.62 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -9.23 Total: 7.95 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 0.90 Total: 0.06 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.04 Total: -52.53 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.70 Total: -16.03 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.71 Total: 16.04 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.72 -7.90 -38.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755759120.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.740 kcal (2) G-P(sol) polarization free energy of solvation -30.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds