Wall clock time and date at job start Tue Mar 31 2020 10:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.47535 * 2 1 4 4 C 1.42896 * 114.00219 * 174.93492 * 3 2 1 5 5 H 1.09002 * 109.47408 * 347.08562 * 4 3 2 6 6 C 1.50703 * 109.47209 * 227.08460 * 4 3 2 7 7 O 1.21276 * 119.99789 * 347.90049 * 6 4 3 8 8 N 1.34778 * 120.00034 * 167.90934 * 6 4 3 9 9 C 1.47025 * 125.64685 * 4.71095 * 8 6 4 10 10 C 1.54324 * 107.26790 * 181.02446 * 9 8 6 11 11 H 1.08994 * 110.72214 * 263.83005 * 10 9 8 12 12 N 1.46507 * 110.71719 * 140.55766 * 10 9 8 13 13 C 1.36937 * 119.99825 * 86.45417 * 12 10 9 14 14 H 1.07997 * 120.00149 * 0.02562 * 13 12 10 15 15 C 1.38815 * 119.99468 * 179.97438 * 13 12 10 16 16 N 1.31616 * 119.99706 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 120.00296 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47320 * 90.00023 * 17 15 13 19 19 H 1.48503 * 109.46846 * 209.99705 * 17 15 13 20 20 H 1.48498 * 109.47255 * 329.99586 * 17 15 13 21 21 C 1.55157 * 102.94137 * 22.19904 * 10 9 8 22 22 C 1.52999 * 111.00926 * 82.56967 * 21 10 9 23 23 C 1.53008 * 111.00003 * 206.38381 * 21 10 9 24 24 C 1.47418 * 125.64746 * 184.41178 * 8 6 4 25 25 C 1.53000 * 109.46970 * 107.08069 * 4 3 2 26 26 C 1.52999 * 109.47359 * 293.98643 * 25 4 3 27 27 C 1.53005 * 109.46949 * 53.98592 * 25 4 3 28 28 H 1.08997 * 109.47023 * 299.99970 * 1 2 3 29 29 H 1.09000 * 109.47204 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46871 * 59.99924 * 1 2 3 31 31 H 1.09002 * 109.46871 * 120.00076 * 2 1 3 32 32 H 1.09007 * 109.47079 * 240.00010 * 2 1 3 33 33 H 1.09004 * 109.88252 * 300.44199 * 9 8 6 34 34 H 1.08999 * 109.88024 * 61.61111 * 9 8 6 35 35 H 0.97004 * 119.99385 * 266.45827 * 12 10 9 36 36 H 0.97004 * 120.00388 * 180.02562 * 16 15 13 37 37 H 1.09000 * 109.47038 * 59.99927 * 22 21 10 38 38 H 1.08998 * 109.47385 * 179.97438 * 22 21 10 39 39 H 1.08994 * 109.47116 * 299.99877 * 22 21 10 40 40 H 1.08999 * 109.47194 * 59.99467 * 23 21 10 41 41 H 1.08999 * 109.46476 * 179.97438 * 23 21 10 42 42 H 1.08995 * 109.47061 * 299.99798 * 23 21 10 43 43 H 1.09007 * 110.36293 * 274.73895 * 24 8 6 44 44 H 1.09001 * 110.36992 * 37.05855 * 24 8 6 45 45 H 1.09002 * 109.47093 * 173.98320 * 25 4 3 46 46 H 1.09000 * 109.47177 * 66.73591 * 26 25 4 47 47 H 1.09003 * 109.46736 * 186.73506 * 26 25 4 48 48 H 1.08994 * 109.46953 * 306.73623 * 26 25 4 49 49 H 1.09003 * 109.47293 * 59.99688 * 27 25 4 50 50 H 1.08997 * 109.47351 * 179.97438 * 27 25 4 51 51 H 1.09002 * 109.47001 * 299.99785 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4261 1.4617 0.1152 5 1 3.8456 0.4996 0.4093 6 6 3.7637 2.4966 1.1575 7 8 2.8987 3.2312 1.5850 8 7 5.0270 2.6057 1.6144 9 6 6.1865 1.8515 1.1161 10 6 7.4092 2.2864 1.9513 11 1 7.9715 3.0646 1.4354 12 7 8.2671 1.1374 2.2513 13 6 9.2324 0.7523 1.3596 14 1 9.3614 1.2959 0.4353 15 6 10.0456 -0.3361 1.6441 16 7 10.9730 -0.7066 0.7868 17 14 9.8228 -1.2758 3.2431 18 1 8.8455 -2.3751 3.0392 19 1 11.1267 -1.8453 3.6683 20 1 9.3193 -0.3541 4.2929 21 6 6.7640 2.8431 3.2479 22 6 6.4282 1.7126 4.2226 23 6 7.6716 3.8822 3.9095 24 6 5.4761 3.5056 2.6923 25 6 4.0148 1.8842 -1.2323 26 6 3.8026 0.7658 -2.2547 27 6 3.3176 3.1571 -1.7168 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 6.0143 0.7823 1.2399 34 1 6.3549 2.0827 0.0643 35 1 8.1513 0.6494 3.0816 36 1 11.5411 -1.4673 0.9854 37 1 7.3407 1.1785 4.4878 38 1 5.9778 2.1307 5.1228 39 1 5.7275 1.0232 3.7518 40 1 7.8400 4.7093 3.2199 41 1 7.1952 4.2562 4.8157 42 1 8.6261 3.4215 4.1640 43 1 5.6978 4.4951 2.2925 44 1 4.7173 3.5718 3.4720 45 1 5.0819 2.0751 -1.1189 46 1 2.7372 0.6562 -2.4574 47 1 4.3246 1.0145 -3.1787 48 1 4.1947 -0.1698 -1.8562 49 1 3.4687 3.9538 -0.9885 50 1 3.7372 3.4583 -2.6766 51 1 2.2505 2.9661 -1.8303 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755759120.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:27 Heat of formation + Delta-G solvation = -92.052834 kcal Electronic energy + Delta-G solvation = -28482.604928 eV Core-core repulsion = 24802.559291 eV Total energy + Delta-G solvation = -3680.045637 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.70827 -40.06144 -38.57484 -36.09920 -35.82104 -34.49330 -33.05819 -32.07931 -29.61456 -29.08507 -28.32982 -28.12870 -26.51211 -25.57582 -23.69968 -23.00250 -21.58564 -20.70261 -20.29503 -19.43610 -18.14615 -17.73742 -17.36465 -16.86493 -16.66903 -16.36119 -15.78542 -15.46627 -15.34874 -15.15427 -14.87311 -14.61428 -14.34266 -14.15485 -13.85702 -13.80717 -13.46409 -13.29602 -13.21693 -13.19683 -13.06622 -13.00305 -12.96006 -12.81588 -12.61586 -12.37540 -12.17127 -12.15413 -11.97097 -11.93296 -11.86971 -11.73987 -11.55491 -11.35091 -11.12853 -10.92202 -10.33467 -9.67592 -9.33869 -7.99557 -5.33848 1.38953 1.40539 1.47943 1.48844 1.71810 2.49473 2.75720 3.26327 3.30225 3.53973 3.63408 3.67554 3.73594 3.78897 4.02651 4.07388 4.14492 4.21660 4.23159 4.31732 4.38958 4.40946 4.45111 4.57345 4.62904 4.74987 4.77811 4.78510 4.81345 4.87369 4.90694 4.94883 4.96551 5.00002 5.03029 5.08273 5.13698 5.15933 5.22692 5.25678 5.32019 5.34576 5.38444 5.47743 5.81265 6.08243 6.23995 6.44558 7.06794 7.10242 7.83842 8.02776 9.21350 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.013196 B = 0.004401 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.299985 B = 6360.740345 C = 7109.088388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.042 3.958 3 O -0.371 6.371 4 C 0.086 3.914 5 H 0.092 0.908 6 C 0.522 3.478 7 O -0.567 6.567 8 N -0.608 5.608 9 C 0.082 3.918 10 C 0.178 3.822 11 H 0.070 0.930 12 N -0.736 5.736 13 C -0.227 4.227 14 H 0.065 0.935 15 C -0.053 4.053 16 N -0.979 5.979 17 Si 0.938 3.062 18 H -0.280 1.280 19 H -0.300 1.300 20 H -0.250 1.250 21 C -0.080 4.080 22 C -0.135 4.135 23 C -0.127 4.127 24 C 0.121 3.879 25 C -0.108 4.108 26 C -0.141 4.141 27 C -0.133 4.133 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.370 0.630 36 H 0.257 0.743 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.065 0.935 47 H 0.070 0.930 48 H 0.059 0.941 49 H 0.031 0.969 50 H 0.070 0.930 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.738 4.087 0.466 17.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.034 4.034 3 O -0.289 6.289 4 C 0.024 3.976 5 H 0.110 0.890 6 C 0.311 3.689 7 O -0.446 6.446 8 N -0.343 5.343 9 C -0.044 4.044 10 C 0.068 3.932 11 H 0.088 0.912 12 N -0.381 5.381 13 C -0.358 4.358 14 H 0.083 0.917 15 C -0.245 4.245 16 N -0.630 5.630 17 Si 0.766 3.234 18 H -0.206 1.206 19 H -0.227 1.227 20 H -0.175 1.175 21 C -0.081 4.081 22 C -0.192 4.192 23 C -0.185 4.185 24 C -0.002 4.002 25 C -0.127 4.127 26 C -0.198 4.198 27 C -0.190 4.190 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.206 0.794 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.102 0.898 46 H 0.084 0.916 47 H 0.089 0.911 48 H 0.078 0.922 49 H 0.051 0.949 50 H 0.089 0.911 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.270 4.609 0.470 17.880 hybrid contribution 0.608 -1.107 0.736 1.462 sum -16.661 3.502 1.205 17.068 Atomic orbital electron populations 1.21734 0.92452 1.03432 1.02663 1.22928 0.96795 0.82672 1.00987 1.87986 1.18923 1.27975 1.94042 1.21960 0.83853 0.97497 0.94252 0.89004 1.20734 0.80679 0.84945 0.82520 1.90649 1.47775 1.45695 1.60509 1.48466 1.06953 1.41758 1.37091 1.23073 0.85832 0.96140 0.99323 1.21340 0.88941 0.89173 0.93709 0.91177 1.42797 1.38853 1.34744 1.21658 1.19035 1.07992 1.09420 0.99369 0.91695 1.25334 0.98176 1.00049 1.00981 1.69855 1.24753 1.30131 1.38220 0.85683 0.76801 0.79438 0.81492 1.20635 1.22657 1.17498 1.22016 0.94396 0.96603 0.95115 1.21689 1.00959 0.97608 0.98940 1.21651 0.98573 0.97326 1.00945 1.22395 0.95284 0.93181 0.89294 1.21568 1.00229 0.97783 0.93148 1.21820 1.02573 0.96966 0.98486 1.21631 1.01071 0.95570 1.00718 0.92980 0.88823 0.91750 0.93414 0.91377 0.91627 0.91024 0.79387 0.93444 0.92951 0.90439 0.93398 0.91576 0.90606 0.92892 0.90362 0.90556 0.89839 0.91633 0.91065 0.92236 0.94935 0.91109 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 10.28 71.98 0.74 -1.70 16 2 C 0.04 0.85 6.17 71.98 0.44 1.30 16 3 O -0.37 -10.08 8.36 -130.23 -1.09 -11.17 16 4 C 0.09 2.30 1.73 29.85 0.05 2.35 16 5 H 0.09 2.29 7.30 -2.39 -0.02 2.27 16 6 C 0.52 16.64 6.20 87.66 0.54 17.18 16 7 O -0.57 -21.86 16.84 15.74 0.26 -21.59 16 8 N -0.61 -17.83 3.31 -811.35 -2.69 -20.51 16 9 C 0.08 2.50 5.48 86.73 0.48 2.98 16 10 C 0.18 5.91 2.85 46.18 0.13 6.04 16 11 H 0.07 2.42 8.02 -2.39 -0.02 2.40 16 12 N -0.74 -30.34 4.88 -317.32 -1.55 -31.89 16 13 C -0.23 -11.72 10.46 84.03 0.88 -10.84 16 14 H 0.07 3.66 8.06 -2.91 -0.02 3.64 16 15 C -0.05 -2.94 5.50 84.86 0.47 -2.47 16 16 N -0.98 -59.50 13.97 21.65 0.30 -59.20 16 17 Si 0.94 42.56 27.74 68.60 1.90 44.46 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 20 H -0.25 -10.14 6.52 99.48 0.65 -9.49 16 21 C -0.08 -2.14 0.87 -50.71 -0.04 -2.19 16 22 C -0.13 -3.58 7.94 71.98 0.57 -3.01 16 23 C -0.13 -2.98 8.68 71.98 0.62 -2.35 16 24 C 0.12 3.20 5.83 86.93 0.51 3.71 16 25 C -0.11 -2.57 2.66 -10.79 -0.03 -2.60 16 26 C -0.14 -2.74 8.31 71.98 0.60 -2.14 16 27 C -0.13 -3.21 8.81 71.98 0.63 -2.57 16 28 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.05 0.95 8.05 -2.39 -0.02 0.93 16 32 H 0.07 1.15 6.74 -2.38 -0.02 1.14 16 33 H 0.07 2.12 7.84 -2.38 -0.02 2.10 16 34 H 0.07 2.15 6.01 -2.39 -0.01 2.13 16 35 H 0.37 14.85 3.12 -92.71 -0.29 14.57 16 36 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 37 H 0.05 1.53 6.34 -2.39 -0.02 1.51 16 38 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.05 1.34 7.91 -2.39 -0.02 1.32 16 40 H 0.07 1.43 8.07 -2.39 -0.02 1.41 16 41 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.08 1.94 7.99 -2.38 -0.02 1.92 16 44 H 0.08 2.03 8.00 -2.39 -0.02 2.01 16 45 H 0.08 2.07 5.47 -2.39 -0.01 2.06 16 46 H 0.06 1.19 7.16 -2.39 -0.02 1.17 16 47 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.06 1.12 8.13 -2.39 -0.02 1.10 16 49 H 0.03 0.91 7.42 -2.39 -0.02 0.89 16 50 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 51 H 0.06 1.51 7.54 -2.39 -0.02 1.49 16 Total: -1.00 -66.60 390.22 4.28 -62.31 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: 0.54 Total: 33.92 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 6.59 Total: 3.67 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -3.93 Total: -111.61 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.82 Total: -32.76 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 1.90 Total: 44.46 kcal Total: -66.60 4.28 -62.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755759120.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.739 kcal (2) G-P(sol) polarization free energy of solvation -66.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds