Wall clock time and date at job start Tue Mar 31 2020 09:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 120.00003 * 2 1 4 4 C 1.50703 * 109.47387 * 270.00130 * 3 2 1 5 5 H 1.07998 * 119.99894 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00009 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00486 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99891 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.46950 * 60.00513 * 8 6 4 10 10 H 1.48508 * 109.47019 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47102 * 299.99902 * 8 6 4 12 12 C 1.34775 * 120.00214 * 180.02562 * 2 1 3 13 13 O 1.21591 * 120.00154 * 184.89185 * 12 2 1 14 14 C 1.47540 * 119.99711 * 4.61179 * 12 2 1 15 15 C 1.39704 * 120.18672 * 311.46498 * 14 12 2 16 16 C 1.37871 * 119.89851 * 179.79080 * 15 14 12 17 17 Br 1.89096 * 119.86324 * 180.23522 * 16 15 14 18 18 C 1.38624 * 120.27629 * 0.49372 * 16 15 14 19 19 C 1.38052 * 120.38160 * 359.73556 * 18 16 15 20 20 C 1.38700 * 120.09872 * 0.03106 * 19 18 16 21 21 O 1.35662 * 120.14723 * 179.97438 * 20 19 18 22 22 H 1.09001 * 109.46918 * 264.90504 * 1 2 3 23 23 H 1.09003 * 109.46797 * 24.90361 * 1 2 3 24 24 H 1.09004 * 109.46773 * 144.90131 * 1 2 3 25 25 H 1.09006 * 109.47060 * 30.00180 * 3 2 1 26 26 H 1.09003 * 109.47234 * 150.00143 * 3 2 1 27 27 H 0.96993 * 120.00659 * 180.02562 * 7 6 4 28 28 H 1.08003 * 120.04987 * 0.02562 * 15 14 12 29 29 H 1.07996 * 119.80677 * 179.72321 * 18 16 15 30 30 H 1.08003 * 119.95344 * 180.02562 * 19 18 16 31 31 H 0.96708 * 113.99861 * 270.01950 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.5533 3.6182 -0.6731 8 14 3.4379 3.4170 -3.4339 9 1 2.1406 3.5938 -4.1345 10 1 4.1804 4.7031 -3.4338 11 1 4.2413 2.3823 -4.1332 12 6 2.1389 -1.1672 -0.0005 13 8 3.3515 -1.1691 0.0893 14 6 1.4048 -2.4428 -0.1038 15 6 0.3009 -2.6864 0.7170 16 6 -0.3834 -3.8787 0.6125 17 35 -1.8815 -4.2047 1.7193 18 6 0.0254 -4.8418 -0.2970 19 6 1.1175 -4.6150 -1.1104 20 6 1.8145 -3.4192 -1.0218 21 8 2.8882 -3.1955 -1.8202 22 1 -0.3633 -0.0913 1.0236 23 1 -0.3633 0.9322 -0.4328 24 1 -0.3633 -0.8408 -0.5909 25 1 1.6084 2.0284 0.5139 26 1 3.1500 1.1384 0.5138 27 1 4.0295 4.4444 -0.8502 28 1 -0.0183 -1.9403 1.4297 29 1 -0.5135 -5.7749 -0.3694 30 1 1.4298 -5.3700 -1.8168 31 1 3.7287 -3.4848 -1.4393 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078343068.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:40 Heat of formation + Delta-G solvation = -43.106986 kcal Electronic energy + Delta-G solvation = -18058.135440 eV Core-core repulsion = 14965.442694 eV Total energy + Delta-G solvation = -3092.692747 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 313.010 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.33759 -38.21734 -36.84662 -34.85124 -32.75059 -31.87800 -31.38086 -28.66141 -27.76632 -26.03437 -24.08901 -22.78133 -21.98784 -19.27512 -18.12756 -16.81973 -16.54665 -16.22118 -15.71182 -15.31235 -14.81245 -14.24670 -14.16612 -14.03088 -13.07474 -13.01046 -12.56019 -12.38586 -12.15072 -11.87436 -11.73567 -11.21367 -10.93105 -10.79719 -10.68255 -10.57140 -10.50223 -10.17225 -9.68251 -9.26297 -9.02818 -8.63269 -8.43603 -7.71763 -6.05024 -4.10003 0.74572 0.94569 1.41442 3.04401 3.33013 3.36889 3.39471 3.51338 3.92184 4.14934 4.44224 4.58136 4.69173 5.00152 5.13963 5.29218 5.37604 5.58035 5.67325 5.77634 5.84003 5.92735 6.13105 6.18939 6.39210 6.99785 7.39189 7.47475 7.67245 7.90973 8.20907 8.29943 8.83161 8.99282 9.55095 11.03079 Molecular weight = 313.01amu Principal moments of inertia in cm(-1) A = 0.023915 B = 0.003958 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.536098 B = 7072.722276 C = 7728.734824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.591 5.591 3 C 0.245 3.755 4 C -0.528 4.528 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.556 3.444 13 O -0.532 6.532 14 C -0.137 4.137 15 C -0.048 4.048 16 C -0.110 4.110 17 Br -0.050 7.050 18 C -0.064 4.064 19 C -0.148 4.148 20 C 0.173 3.827 21 O -0.484 6.484 22 H 0.046 0.954 23 H 0.078 0.922 24 H 0.058 0.942 25 H 0.035 0.965 26 H 0.047 0.953 27 H 0.264 0.736 28 H 0.144 0.856 29 H 0.138 0.862 30 H 0.142 0.858 31 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.691 -18.602 4.177 22.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.322 5.322 3 C 0.126 3.874 4 C -0.567 4.567 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.341 3.659 13 O -0.410 6.410 14 C -0.142 4.142 15 C -0.068 4.068 16 C -0.189 4.189 17 Br 0.035 6.965 18 C -0.084 4.084 19 C -0.168 4.168 20 C 0.126 3.874 21 O -0.296 6.296 22 H 0.065 0.935 23 H 0.097 0.903 24 H 0.076 0.924 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.162 0.838 29 H 0.155 0.845 30 H 0.160 0.840 31 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -11.910 -18.257 4.308 22.220 hybrid contribution 0.749 0.292 -0.970 1.260 sum -11.161 -17.965 3.339 21.412 Atomic orbital electron populations 1.21831 0.81348 1.03220 1.00116 1.48086 1.06290 1.07559 1.70285 1.19372 0.92677 0.77607 0.97735 1.21393 1.36749 1.06396 0.92167 0.92413 1.24921 0.95254 0.96297 0.97500 1.69921 1.38309 1.14344 1.30816 0.86544 0.78413 0.77801 0.84603 1.20221 1.21147 1.20110 1.17776 0.87073 0.82954 0.78066 1.90747 1.13247 1.86888 1.50099 1.20732 0.97919 0.97423 0.98106 1.21326 0.92292 0.95558 0.97661 1.21615 0.97911 0.98081 1.01341 1.96709 1.37966 1.96127 1.65684 1.21038 0.95649 0.98258 0.93433 1.21384 0.97363 0.96921 1.01108 1.18548 0.89738 0.90832 0.88270 1.84708 1.16727 1.85420 1.42697 0.93513 0.90289 0.92359 0.94680 0.93531 0.92621 0.83844 0.84457 0.84029 0.73836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.31 9.05 59.85 0.54 1.85 16 2 N -0.59 -12.87 2.86 -184.18 -0.53 -13.40 16 3 C 0.24 6.46 5.17 -5.19 -0.03 6.43 16 4 C -0.53 -15.15 9.39 -34.44 -0.32 -15.48 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 7 N -0.90 -26.62 13.29 55.43 0.74 -25.89 16 8 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.56 11.95 6.96 -12.47 -0.09 11.86 16 13 O -0.53 -13.34 16.06 -4.51 -0.07 -13.41 16 14 C -0.14 -2.27 4.92 -104.85 -0.52 -2.79 16 15 C -0.05 -0.65 7.49 -39.17 -0.29 -0.95 16 16 C -0.11 -1.27 6.22 -39.57 -0.25 -1.52 16 17 Br -0.05 -0.50 33.69 -68.01 -2.29 -2.79 16 18 C -0.06 -0.65 9.77 -39.51 -0.39 -1.04 16 19 C -0.15 -1.66 9.98 -39.48 -0.39 -2.06 16 20 C 0.17 2.57 6.69 -38.70 -0.26 2.31 16 21 O -0.48 -7.62 12.53 -28.48 -0.36 -7.97 16 22 H 0.05 0.64 7.05 -51.93 -0.37 0.28 16 23 H 0.08 1.33 8.03 -51.93 -0.42 0.91 16 24 H 0.06 0.88 6.25 -51.93 -0.32 0.55 16 25 H 0.04 0.92 8.07 -51.93 -0.42 0.51 16 26 H 0.05 1.37 7.36 -51.93 -0.38 0.99 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.14 1.84 6.25 -52.48 -0.33 1.51 16 29 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 31 H 0.40 4.83 9.06 45.56 0.41 5.24 16 LS Contribution 294.70 15.07 4.44 4.44 Total: -1.00 -33.58 294.70 -7.39 -40.97 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -2.21 Total: 0.70 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -2.09 Total: 0.32 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.21 Total: -39.29 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.43 Total: -21.38 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -2.29 Total: -2.79 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.58 -7.39 -40.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078343068.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.138 kcal (2) G-P(sol) polarization free energy of solvation -33.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds