Wall clock time and date at job start Tue Mar 31 2020 10:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46900 * 110.99664 * 2 1 4 4 C 1.50695 * 109.47537 * 66.04833 * 3 2 1 5 5 C 1.34505 * 125.78464 * 89.99211 * 4 3 2 6 6 C 1.41391 * 106.85182 * 180.02562 * 5 4 3 7 7 C 1.34625 * 106.83596 * 0.02562 * 6 5 4 8 8 Br 1.89099 * 125.80097 * 179.97438 * 7 6 5 9 9 O 1.34315 * 108.39886 * 359.73708 * 7 6 5 10 10 C 1.46897 * 111.00088 * 236.04671 * 2 1 3 11 11 C 1.52999 * 109.47064 * 288.64047 * 10 2 1 12 12 C 1.50702 * 115.54997 * 305.88448 * 11 10 2 13 13 H 1.07995 * 120.00620 * 144.41000 * 12 11 10 14 14 C 1.37880 * 119.99367 * 324.40269 * 12 11 10 15 15 N 1.31509 * 120.00543 * 4.60275 * 14 12 11 16 16 Si 1.86802 * 119.99558 * 184.59534 * 14 12 11 17 17 H 1.48502 * 109.46897 * 90.00605 * 16 14 12 18 18 H 1.48504 * 109.47458 * 210.00167 * 16 14 12 19 19 H 1.48492 * 109.47443 * 330.00572 * 16 14 12 20 20 C 1.52999 * 117.50035 * 160.20932 * 11 10 2 21 21 C 1.53008 * 117.50103 * 91.54927 * 11 10 2 22 22 H 1.08992 * 109.46845 * 188.93611 * 1 2 3 23 23 H 1.09004 * 109.47057 * 308.93579 * 1 2 3 24 24 H 1.09000 * 109.46882 * 68.93519 * 1 2 3 25 25 H 1.09004 * 109.46849 * 186.04464 * 3 2 1 26 26 H 1.09002 * 109.47351 * 306.04474 * 3 2 1 27 27 H 1.08003 * 126.56981 * 359.97438 * 5 4 3 28 28 H 1.07997 * 126.58362 * 180.02562 * 6 5 4 29 29 H 1.09004 * 109.46917 * 48.63509 * 10 2 1 30 30 H 1.08997 * 109.47147 * 168.63851 * 10 2 1 31 31 H 0.96998 * 120.00410 * 184.99716 * 15 14 12 32 32 H 1.08994 * 117.49770 * 0.02562 * 20 11 10 33 33 H 1.08998 * 117.49927 * 145.01828 * 20 11 10 34 34 H 1.09000 * 117.49768 * 214.97995 * 21 11 10 35 35 H 1.08996 * 117.49279 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6370 2.0472 1.2984 5 6 2.3808 2.0424 2.4191 6 6 1.6710 2.7919 3.3853 7 6 0.5345 3.2098 2.7969 8 35 -0.8122 4.2579 3.6115 9 8 0.5222 2.7601 1.5313 10 6 1.9955 -0.7659 -1.1376 11 6 1.7478 -2.2579 -0.9062 12 6 2.2685 -2.8089 0.3963 13 1 1.7180 -3.5795 0.9153 14 6 3.4480 -2.3291 0.9252 15 7 4.0717 -1.3291 0.3418 16 14 4.1600 -3.0996 2.4709 17 1 5.0700 -4.2115 2.0956 18 1 4.9189 -2.0740 3.2309 19 1 3.0573 -3.6258 3.3148 20 6 1.7855 -3.1781 -2.1279 21 6 0.4494 -2.8522 -1.4557 22 1 -0.3633 -1.0151 0.1596 23 1 -0.3633 0.6459 0.7994 24 1 -0.3633 0.3694 -0.9590 25 1 3.0797 1.3444 -0.1082 26 1 1.5611 1.9274 -0.8309 27 1 3.3365 1.5582 2.5550 28 1 1.9810 2.9910 4.4005 29 1 1.4917 -0.4515 -2.0516 30 1 3.0663 -0.5858 -1.2325 31 1 4.9369 -1.0389 0.6706 32 1 1.9871 -2.7207 -3.0964 33 1 2.1866 -4.1821 -1.9896 34 1 -0.0279 -3.6418 -0.8755 35 1 -0.2285 -2.1800 -1.9818 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602767607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:03 Heat of formation + Delta-G solvation = 64.329996 kcal Electronic energy + Delta-G solvation = -18776.118826 eV Core-core repulsion = 15823.917991 eV Total energy + Delta-G solvation = -2952.200835 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 313.042 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.34743 -37.55184 -35.06452 -32.94263 -32.01346 -31.89230 -29.43550 -26.62285 -25.73179 -25.10350 -21.84561 -21.44691 -21.13902 -19.92911 -18.86748 -16.87440 -16.20508 -16.02753 -14.78475 -14.44929 -14.22116 -14.15009 -13.51216 -13.21123 -12.80364 -12.56580 -12.46374 -11.84071 -11.43610 -11.29513 -11.24977 -11.11633 -10.97438 -10.82149 -10.59804 -10.46928 -10.42715 -9.93772 -9.66125 -9.42155 -8.81126 -8.63736 -8.15789 -8.05903 -7.19652 -5.85143 -3.92215 0.99747 1.74012 2.82424 3.34521 3.41332 3.46063 3.58149 4.47709 4.86947 5.14057 5.18725 5.25141 5.63189 5.72299 5.82831 5.96597 6.06729 6.14012 6.17189 6.21709 6.29828 6.38845 6.58773 6.65968 6.70816 6.71694 6.78937 6.94700 7.17115 7.29137 7.33731 7.58252 8.00390 8.13134 8.21068 8.56302 9.02265 9.68354 11.12536 Molecular weight = 313.04amu Principal moments of inertia in cm(-1) A = 0.019696 B = 0.004294 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.251917 B = 6519.116838 C = 7294.574059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.488 5.488 3 C 0.138 3.862 4 C 0.043 3.957 5 C -0.193 4.193 6 C -0.149 4.149 7 C -0.049 4.049 8 Br 0.031 6.969 9 O -0.166 6.166 10 C 0.109 3.891 11 C 0.065 3.935 12 C -0.468 4.468 13 H 0.053 0.947 14 C 0.087 3.913 15 N -0.875 5.875 16 Si 0.889 3.111 17 H -0.285 1.285 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.209 4.209 21 C -0.218 4.218 22 H 0.075 0.925 23 H 0.049 0.951 24 H 0.007 0.993 25 H 0.114 0.886 26 H 0.031 0.969 27 H 0.158 0.842 28 H 0.153 0.847 29 H -0.015 1.015 30 H 0.121 0.879 31 H 0.254 0.746 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.804 12.170 4.040 14.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.211 5.211 3 C 0.010 3.990 4 C -0.009 4.009 5 C -0.213 4.213 6 C -0.171 4.171 7 C -0.177 4.177 8 Br 0.115 6.885 9 O -0.063 6.063 10 C -0.017 4.017 11 C 0.064 3.936 12 C -0.505 4.505 13 H 0.071 0.929 14 C -0.115 4.115 15 N -0.513 5.513 16 Si 0.717 3.283 17 H -0.211 1.211 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.248 4.248 21 C -0.255 4.255 22 H 0.094 0.906 23 H 0.067 0.933 24 H 0.025 0.975 25 H 0.132 0.868 26 H 0.049 0.951 27 H 0.175 0.825 28 H 0.171 0.829 29 H 0.002 0.998 30 H 0.139 0.861 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.241 12.546 4.623 14.756 hybrid contribution 0.313 -0.367 0.075 0.488 sum -5.928 12.179 4.699 14.337 Atomic orbital electron populations 1.22446 0.89386 1.02330 0.97962 1.61621 1.05346 1.08392 1.45698 1.20630 1.01792 0.89131 0.87420 1.22896 0.84129 0.94715 0.99194 1.21615 1.03397 1.04246 0.92055 1.21701 0.93509 1.00758 1.01141 1.23544 0.98759 1.08838 0.86568 1.96740 1.50195 1.66232 1.75341 1.84064 1.40033 1.54659 1.27586 1.21873 1.02329 0.92109 0.85390 1.18969 0.92331 0.89873 0.92440 1.20320 1.06720 1.19554 1.03877 0.92909 1.24712 0.97018 0.93614 0.96174 1.69788 1.14489 1.25425 1.41611 0.86660 0.79030 0.78797 0.83777 1.21135 1.21324 1.20171 1.23004 1.01487 1.02177 0.98099 1.22941 0.91454 1.04565 1.06537 0.90649 0.93256 0.97503 0.86777 0.95070 0.82461 0.82931 0.99754 0.86099 0.93524 0.91956 0.90471 0.90911 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.08 60.07 0.55 1.08 16 2 N -0.49 -10.32 4.07 -244.37 -1.00 -11.32 16 3 C 0.14 2.56 5.49 -4.98 -0.03 2.53 16 4 C 0.04 0.78 5.90 -35.63 -0.21 0.57 16 5 C -0.19 -3.33 10.81 -39.70 -0.43 -3.76 16 6 C -0.15 -2.28 10.86 -39.66 -0.43 -2.72 16 7 C -0.05 -0.77 7.80 29.45 0.23 -0.54 16 8 Br 0.03 0.39 34.09 -68.01 -2.32 -1.93 16 9 O -0.17 -2.92 9.82 5.53 0.05 -2.86 16 10 C 0.11 2.44 3.90 -3.83 -0.01 2.43 16 11 C 0.06 1.54 1.64 -155.66 -0.26 1.28 16 12 C -0.47 -12.30 8.74 -34.44 -0.30 -12.60 16 13 H 0.05 1.43 7.82 -52.49 -0.41 1.02 16 14 C 0.09 2.25 5.32 -17.82 -0.09 2.15 16 15 N -0.88 -22.14 10.12 55.43 0.56 -21.58 16 16 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C -0.21 -4.60 9.96 -26.69 -0.27 -4.87 16 21 C -0.22 -4.67 8.58 -26.69 -0.23 -4.90 16 22 H 0.07 1.57 6.67 -51.93 -0.35 1.22 16 23 H 0.05 0.95 6.40 -51.93 -0.33 0.62 16 24 H 0.01 0.12 8.02 -51.93 -0.42 -0.29 16 25 H 0.11 2.13 7.87 -51.93 -0.41 1.72 16 26 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 27 H 0.16 2.71 8.06 -52.48 -0.42 2.28 16 28 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 29 H -0.02 -0.33 7.92 -51.93 -0.41 -0.74 16 30 H 0.12 2.90 5.62 -51.93 -0.29 2.60 16 31 H 0.25 6.23 8.32 -40.82 -0.34 5.89 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 34 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 312.46 15.07 4.71 4.71 Total: -1.00 -26.03 312.46 -9.21 -35.24 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -4.71 Total: 1.38 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -1.48 Total: -19.34 kcal Atomic # 7 Polarization: -32.46 SS G_CDS: -0.43 Total: -32.89 kcal Atomic # 8 Polarization: -2.92 SS G_CDS: 0.05 Total: -2.86 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 35 Polarization: 0.39 SS G_CDS: -2.32 Total: -1.93 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -26.03 -9.21 -35.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602767607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.567 kcal (2) G-P(sol) polarization free energy of solvation -26.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds