Wall clock time and date at job start Tue Mar 31 2020 10:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 120.00402 * 2 1 4 4 N 1.46504 * 109.46986 * 125.00077 * 3 2 1 5 5 C 1.46501 * 119.99877 * 90.00336 * 4 3 2 6 6 C 1.50699 * 109.47236 * 269.99646 * 5 4 3 7 7 C 1.33347 * 125.18409 * 89.99861 * 6 5 4 8 8 C 1.38475 * 114.92849 * 180.02562 * 7 6 5 9 9 C 1.33503 * 114.88382 * 0.02562 * 8 7 6 10 10 Cl 1.73595 * 125.20870 * 179.97438 * 9 8 7 11 11 S 1.75877 * 125.19207 * 270.00136 * 6 5 4 12 12 C 1.34780 * 119.99841 * 270.00266 * 4 3 2 13 13 O 1.21283 * 119.99485 * 179.97438 * 12 4 3 14 14 C 1.50701 * 120.00295 * 0.02562 * 12 4 3 15 15 C 1.52998 * 109.46923 * 179.97438 * 14 12 4 16 16 C 1.50701 * 109.46923 * 179.97438 * 15 14 12 17 17 H 1.08007 * 120.00137 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00113 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99851 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00199 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47332 * 89.99421 * 20 18 16 22 22 H 1.48502 * 109.47187 * 209.99937 * 20 18 16 23 23 H 1.48510 * 109.46944 * 329.99466 * 20 18 16 24 24 H 1.08002 * 119.99804 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.00089 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99804 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.46868 * 5.00472 * 3 2 1 28 28 H 1.08994 * 109.47679 * 245.00235 * 3 2 1 29 29 H 1.09006 * 109.46855 * 149.99786 * 5 4 3 30 30 H 1.08997 * 109.46849 * 30.00096 * 5 4 3 31 31 H 1.07996 * 122.54060 * 0.02599 * 7 6 5 32 32 H 1.08005 * 122.55896 * 179.73668 * 8 7 6 33 33 H 1.08997 * 109.46946 * 300.00310 * 14 12 4 34 34 H 1.08997 * 109.46563 * 60.00285 * 14 12 4 35 35 H 1.08994 * 109.47299 * 299.99875 * 15 14 12 36 36 H 1.09002 * 109.46774 * 60.00506 * 15 14 12 37 37 H 0.96996 * 119.99682 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 4.3590 0.8255 0.9694 6 6 4.3926 -0.6440 1.3018 7 6 4.1968 -1.6337 0.4298 8 6 4.2748 -2.9080 0.9660 9 6 4.5336 -2.9518 2.2750 10 17 4.6875 -4.4019 3.2169 11 16 4.6958 -1.3153 2.8989 12 6 2.5937 1.8221 2.3214 13 8 3.3638 1.8437 3.2582 14 6 1.1892 2.3424 2.4883 15 6 0.9955 2.8363 3.9233 16 6 -0.4087 3.3572 4.0900 17 1 -1.0944 3.3383 3.2557 18 6 -0.8180 3.8589 5.3073 19 7 0.0170 3.8825 6.3231 20 14 -2.5588 4.5039 5.5142 21 1 -3.4479 3.3978 5.9514 22 1 -2.5694 5.5811 6.5363 23 1 -3.0431 5.0458 4.2190 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3587 2.1316 0.0897 28 1 2.6213 1.4026 -0.9313 29 1 5.0285 1.3649 1.6394 30 1 4.6809 0.9723 -0.0616 31 1 3.9930 -1.4550 -0.6156 32 1 4.1323 -3.7985 0.3716 33 1 1.0222 3.1662 1.7944 34 1 0.4785 1.5425 2.2807 35 1 1.1625 2.0123 4.6169 36 1 1.7064 3.6361 4.1313 37 1 -0.2710 4.2351 7.1796 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291170708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:20 Heat of formation + Delta-G solvation = -11.580220 kcal Electronic energy + Delta-G solvation = -21129.311176 eV Core-core repulsion = 17830.999184 eV Total energy + Delta-G solvation = -3298.311992 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 313.064 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.04741 -39.03125 -37.74414 -37.04238 -35.62679 -34.23473 -33.03997 -31.39760 -28.15456 -27.49279 -26.24708 -24.43445 -23.10823 -21.11601 -20.60120 -19.73781 -18.79086 -18.69077 -17.59960 -16.97512 -16.80146 -16.49754 -16.36508 -15.53562 -14.98795 -14.81929 -14.49598 -14.42032 -14.16261 -14.13184 -13.94969 -13.81677 -13.29653 -12.90935 -12.82676 -12.72620 -12.46478 -12.44525 -12.15957 -11.92348 -11.91651 -11.59665 -11.54099 -11.30058 -10.79147 -10.56506 -10.23275 -9.83529 -9.61732 -9.50438 -8.17226 -6.31184 -0.23143 0.13579 0.92730 1.22064 1.32148 1.42012 1.44611 1.55391 1.61714 1.72151 2.31190 2.45239 3.15936 3.74580 3.81422 4.07477 4.20844 4.26049 4.33828 4.47242 4.50489 4.53417 4.56041 4.68202 4.87023 4.94860 5.04655 5.08074 5.16442 5.39424 5.48373 5.57595 5.63797 5.81143 5.85707 5.87693 6.18432 6.38298 6.87072 7.27127 7.39168 8.95408 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.015080 B = 0.003610 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.318630 B = 7754.517280 C = 8432.817742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.184 4.184 3 C 0.131 3.869 4 N -0.602 5.602 5 C 0.180 3.820 6 C -0.186 4.186 7 C -0.108 4.108 8 C -0.113 4.113 9 C -0.166 4.166 10 Cl -0.021 7.021 11 S 0.104 5.896 12 C 0.511 3.489 13 O -0.576 6.576 14 C -0.115 4.115 15 C 0.046 3.954 16 C -0.541 4.541 17 H 0.075 0.925 18 C -0.005 4.005 19 N -0.937 5.937 20 Si 0.971 3.029 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.253 1.253 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.116 0.884 27 H 0.089 0.911 28 H 0.126 0.874 29 H 0.072 0.928 30 H 0.146 0.854 31 H 0.185 0.815 32 H 0.173 0.827 33 H 0.102 0.898 34 H 0.094 0.906 35 H -0.023 1.023 36 H -0.017 1.017 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.637 -13.310 -20.305 25.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.203 4.203 3 C 0.010 3.990 4 N -0.334 5.334 5 C 0.056 3.944 6 C -0.305 4.305 7 C -0.138 4.138 8 C -0.146 4.146 9 C -0.310 4.310 10 Cl 0.007 6.993 11 S 0.367 5.633 12 C 0.301 3.699 13 O -0.455 6.455 14 C -0.154 4.154 15 C 0.008 3.992 16 C -0.579 4.579 17 H 0.093 0.907 18 C -0.203 4.203 19 N -0.577 5.577 20 Si 0.795 3.205 21 H -0.199 1.199 22 H -0.212 1.212 23 H -0.177 1.177 24 H 0.120 0.880 25 H 0.121 0.879 26 H 0.134 0.866 27 H 0.107 0.893 28 H 0.144 0.856 29 H 0.090 0.910 30 H 0.164 0.836 31 H 0.202 0.798 32 H 0.190 0.810 33 H 0.120 0.880 34 H 0.112 0.888 35 H -0.004 1.004 36 H 0.001 0.999 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.394 -12.740 -18.121 23.688 hybrid contribution -0.879 -0.600 -0.012 1.064 sum 7.515 -13.339 -18.133 23.732 Atomic orbital electron populations 1.24077 0.96160 1.02680 0.98806 1.23430 0.96342 0.99225 1.01318 1.21055 0.92580 0.96099 0.89228 1.48149 1.13084 1.61141 1.11055 1.20058 0.83703 0.85909 1.04694 1.25146 1.09555 1.01152 0.94671 1.20266 1.01877 0.89430 1.02270 1.20526 1.01352 1.00522 0.92181 1.25521 1.16110 0.92410 0.96999 1.98353 1.96551 1.32581 1.71780 1.85537 1.69744 0.95507 1.12497 1.21356 0.90321 0.76245 0.81970 1.90657 1.56544 1.57259 1.41001 1.21635 0.92035 1.01841 0.99933 1.18654 0.95390 0.94039 0.91092 1.21693 0.98201 1.40719 0.97284 0.90691 1.26110 1.02361 0.96153 0.95641 1.70181 1.37693 1.47305 1.02567 0.85361 0.78665 0.77927 0.78553 1.19859 1.21196 1.17696 0.87985 0.87921 0.86637 0.89272 0.85602 0.90972 0.83617 0.79782 0.81012 0.87983 0.88783 1.00441 0.99904 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.33 13.86 67.79 0.94 -2.39 16 2 C -0.18 -3.28 9.74 25.65 0.25 -3.03 16 3 C 0.13 2.25 5.69 85.63 0.49 2.74 16 4 N -0.60 -15.29 2.44 -830.48 -2.03 -17.32 16 5 C 0.18 3.81 5.94 85.63 0.51 4.32 16 6 C -0.19 -4.11 6.09 24.58 0.15 -3.96 16 7 C -0.11 -1.72 8.32 21.22 0.18 -1.54 16 8 C -0.11 -2.02 10.13 21.25 0.22 -1.80 16 9 C -0.17 -3.92 7.10 66.75 0.47 -3.45 16 10 Cl -0.02 -0.48 29.29 -2.72 -0.08 -0.56 16 11 S 0.10 3.00 23.33 -56.49 -1.32 1.68 16 12 C 0.51 19.47 7.67 87.66 0.67 20.15 16 13 O -0.58 -27.49 15.56 -3.04 -0.05 -27.53 16 14 C -0.11 -4.66 4.19 29.85 0.13 -4.53 16 15 C 0.05 2.58 4.26 29.85 0.13 2.70 16 16 C -0.54 -30.92 9.11 25.60 0.23 -30.68 16 17 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 18 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 19 N -0.94 -59.94 13.29 21.45 0.28 -59.66 16 20 Si 0.97 44.41 29.54 68.60 2.03 46.44 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.25 -10.66 7.11 99.48 0.71 -9.96 16 24 H 0.10 1.88 7.84 -2.91 -0.02 1.85 16 25 H 0.10 1.76 8.06 -2.91 -0.02 1.74 16 26 H 0.12 1.95 6.13 -2.91 -0.02 1.93 16 27 H 0.09 1.59 6.09 -2.39 -0.01 1.58 16 28 H 0.13 1.15 7.89 -2.39 -0.02 1.13 16 29 H 0.07 1.91 7.42 -2.38 -0.02 1.89 16 30 H 0.15 1.62 7.89 -2.39 -0.02 1.61 16 31 H 0.19 1.53 7.98 -2.91 -0.02 1.51 16 32 H 0.17 2.12 8.06 -2.91 -0.02 2.09 16 33 H 0.10 3.61 7.40 -2.39 -0.02 3.59 16 34 H 0.09 3.53 7.53 -2.39 -0.02 3.52 16 35 H -0.02 -1.47 8.10 -2.39 -0.02 -1.49 16 36 H -0.02 -1.11 8.10 -2.39 -0.02 -1.13 16 37 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -78.00 346.87 4.73 -73.26 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: 1.07 Total: 5.01 kcal Atomic # 6 Polarization: -26.14 SS G_CDS: 4.82 Total: -21.32 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -1.74 Total: -76.98 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.05 Total: -27.53 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -1.32 Total: 1.68 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -0.08 Total: -0.56 kcal Total: -78.00 4.73 -73.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291170708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.681 kcal (2) G-P(sol) polarization free energy of solvation -77.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds