Wall clock time and date at job start Tue Mar 31 2020 10:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00327 * 2 1 4 4 H 1.48503 * 109.47353 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47196 * 299.99410 * 3 2 1 6 6 H 1.48505 * 109.47472 * 59.99698 * 3 2 1 7 7 C 1.37882 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99815 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99704 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.52568 * 299.91352 * 9 7 2 11 11 C 1.53042 * 109.49484 * 179.83464 * 9 7 2 12 12 C 1.53041 * 109.53762 * 178.68110 * 11 9 7 13 13 C 1.52766 * 109.38099 * 61.24136 * 12 11 9 14 14 N 1.46922 * 109.01055 * 305.58761 * 13 12 11 15 15 C 1.34769 * 120.63031 * 233.58432 * 14 13 12 16 16 O 1.21289 * 120.00200 * 179.71888 * 15 14 13 17 17 C 1.50703 * 120.00424 * 359.71907 * 15 14 13 18 18 S 1.80999 * 109.47490 * 180.02562 * 17 15 14 19 19 C 1.76196 * 99.99802 * 180.02562 * 18 17 15 20 20 N 1.30310 * 126.17485 * 359.95395 * 19 18 17 21 21 N 1.26090 * 117.60542 * 180.02562 * 20 19 18 22 22 C 1.29326 * 117.97651 * 359.97438 * 21 20 19 23 23 S 1.76481 * 107.87906 * 0.02562 * 22 21 20 24 24 C 1.46926 * 118.73504 * 53.30850 * 14 13 12 25 25 H 0.96998 * 119.99248 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46455 * 298.70342 * 11 9 7 27 27 H 1.08998 * 109.46001 * 58.67981 * 11 9 7 28 28 H 1.09001 * 109.49779 * 181.31877 * 12 11 9 29 29 H 1.09004 * 109.50220 * 301.38366 * 12 11 9 30 30 H 1.09000 * 109.50658 * 185.70203 * 13 12 11 31 31 H 1.08998 * 109.42650 * 65.42662 * 13 12 11 32 32 H 1.09005 * 109.46458 * 59.99874 * 17 15 14 33 33 H 1.09000 * 109.46795 * 300.00249 * 17 15 14 34 34 H 1.08002 * 126.05957 * 180.02562 * 22 21 20 35 35 H 1.08997 * 109.58741 * 66.43443 * 24 14 13 36 36 H 1.09007 * 109.58659 * 186.85750 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6247 -2.5582 0.8907 11 6 2.2448 -3.6629 -0.0030 12 6 1.4808 -4.9886 0.0302 13 6 0.6024 -5.0987 -1.2147 14 7 -0.2558 -3.9093 -1.3017 15 6 -1.5924 -4.0342 -1.4207 16 8 -2.2905 -3.0446 -1.4864 17 6 -2.2198 -5.4035 -1.4720 18 16 -4.0150 -5.2391 -1.6336 19 6 -4.4760 -6.9393 -1.6680 20 7 -3.6664 -7.9575 -1.5921 21 7 -4.1731 -9.1113 -1.6331 22 6 -5.4579 -9.2060 -1.7469 23 16 -6.1180 -7.5705 -1.8119 24 6 0.3704 -2.5812 -1.2504 25 1 -0.4849 0.8401 -0.0004 26 1 2.8541 -3.6174 -0.9056 27 1 2.8887 -3.5931 0.8737 28 1 2.1895 -5.8165 0.0513 29 1 0.8529 -5.0245 0.9205 30 1 -0.0177 -5.9924 -1.1448 31 1 1.2347 -5.1587 -2.1005 32 1 -1.9851 -5.9451 -0.5555 33 1 -1.8268 -5.9513 -2.3285 34 1 -6.0261 -10.1232 -1.7939 35 1 0.9834 -2.4316 -2.1392 36 1 -0.4027 -1.8142 -1.2039 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911070.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:44 Heat of formation + Delta-G solvation = 28.697531 kcal Electronic energy + Delta-G solvation = -21058.457635 eV Core-core repulsion = 17796.228675 eV Total energy + Delta-G solvation = -3262.228960 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 313.066 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.09955 -39.56791 -36.84618 -33.53496 -32.04763 -31.81712 -30.42576 -29.25799 -27.05410 -25.10199 -24.38863 -21.89430 -21.66810 -20.25290 -19.43860 -18.35873 -17.66135 -16.91831 -16.25039 -15.90511 -15.67891 -15.25370 -14.85284 -14.50395 -13.80833 -13.78698 -13.66659 -13.31655 -12.98502 -12.69471 -12.62479 -12.06640 -11.91621 -11.26427 -11.04185 -10.96202 -10.94085 -10.73880 -10.53511 -10.48505 -10.36436 -10.28422 -9.99116 -9.96270 -9.53555 -9.17819 -8.98186 -8.48564 -7.98872 -7.84573 -6.04008 -4.12709 0.01757 0.31074 0.91285 1.26440 1.79118 2.28527 2.96235 3.27744 3.36565 3.39384 3.55714 4.12577 4.39751 4.59744 4.69947 4.95767 5.10985 5.18712 5.26339 5.30675 5.43897 5.61869 5.93497 6.10992 6.25637 6.53837 6.59500 6.78101 6.91246 7.03382 7.14980 7.56778 7.80375 7.92228 8.09111 8.23787 8.32435 8.60126 8.91583 9.53305 11.01380 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.028051 B = 0.003063 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.938184 B = 9140.608045 C = 9978.908389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.040 3.960 10 H 0.030 0.970 11 C -0.111 4.111 12 C -0.135 4.135 13 C 0.105 3.895 14 N -0.595 5.595 15 C 0.522 3.478 16 O -0.525 6.525 17 C -0.153 4.153 18 S 0.121 5.879 19 C -0.012 4.012 20 N -0.280 5.280 21 N -0.249 5.249 22 C -0.007 4.007 23 S 0.102 5.898 24 C 0.112 3.888 25 H 0.263 0.737 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.218 0.782 35 H 0.046 0.954 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.740 -17.027 -4.122 20.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.078 0.922 9 C 0.020 3.980 10 H 0.048 0.952 11 C -0.149 4.149 12 C -0.173 4.173 13 C -0.019 4.019 14 N -0.328 5.328 15 C 0.306 3.694 16 O -0.402 6.402 17 C -0.306 4.306 18 S 0.352 5.648 19 C -0.398 4.398 20 N -0.123 5.123 21 N -0.083 5.083 22 C -0.312 4.312 23 S 0.339 5.661 24 C -0.008 4.008 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.234 0.766 35 H 0.064 0.936 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.597 -15.483 -4.199 19.226 hybrid contribution 1.209 -0.523 0.101 1.321 sum -9.387 -16.006 -4.098 19.002 Atomic orbital electron populations 1.69887 1.05738 1.26816 1.49321 1.25063 0.94903 0.99325 0.94778 0.86526 0.80042 0.83725 0.77664 1.19786 1.20944 1.20989 1.21106 0.92974 0.90024 1.51816 0.92242 1.18983 0.92628 0.92436 0.93908 0.95232 1.21636 0.98579 0.93950 1.00732 1.21877 0.98681 0.99314 0.97402 1.21660 0.93750 0.87486 0.99014 1.48438 1.04583 1.09532 1.70199 1.19411 0.83233 0.88476 0.78268 1.90772 1.60663 1.38564 1.50216 1.24038 0.95576 1.02099 1.08904 1.86651 1.03894 0.87186 1.87090 1.32203 0.95501 1.07364 1.04749 1.71775 1.29101 0.92501 1.18912 1.70685 1.09275 1.15699 1.12609 1.31120 0.93644 1.01090 1.05355 1.85820 1.08520 1.02349 1.69423 1.22406 0.98784 0.80720 0.98852 0.92644 0.93078 0.92880 0.91939 0.92080 0.90927 0.91563 0.85827 0.85943 0.76593 0.93598 0.85743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.19 11.39 55.43 0.63 -24.56 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -13.80 8.56 -34.44 -0.29 -14.10 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.04 0.95 2.25 -91.65 -0.21 0.74 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.14 5.11 -26.69 -0.14 -2.27 16 12 C -0.13 -2.08 6.07 -26.83 -0.16 -2.24 16 13 C 0.10 1.55 6.31 -3.93 -0.02 1.52 16 14 N -0.59 -11.33 2.98 -173.03 -0.52 -11.84 16 15 C 0.52 9.83 7.72 -10.99 -0.08 9.75 16 16 O -0.52 -12.02 15.28 5.55 0.08 -11.94 16 17 C -0.15 -2.16 4.05 36.01 0.15 -2.01 16 18 S 0.12 1.66 21.45 -107.50 -2.31 -0.65 16 19 C -0.01 -0.15 7.85 52.12 0.41 0.26 16 20 N -0.28 -3.78 10.96 31.32 0.34 -3.43 16 21 N -0.25 -3.05 11.55 30.50 0.35 -2.70 16 22 C -0.01 -0.05 12.68 51.71 0.66 0.60 16 23 S 0.10 0.92 23.54 -107.50 -2.53 -1.61 16 24 C 0.11 2.62 5.40 -3.71 -0.02 2.60 16 25 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.88 5.94 -51.93 -0.31 0.57 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.12 1.61 7.68 -51.91 -0.40 1.21 16 33 H 0.12 1.51 7.95 -51.92 -0.41 1.10 16 34 H 0.22 0.82 8.06 -52.49 -0.42 0.39 16 35 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.12 3.41 5.12 -51.93 -0.27 3.14 16 LS Contribution 327.08 15.07 4.93 4.93 Total: -1.00 -31.64 327.08 -8.15 -39.79 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -4.31 Total: -0.40 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 0.19 Total: -3.55 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.81 Total: -42.52 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.08 Total: -11.94 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -4.84 Total: -2.26 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.64 -8.15 -39.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911070.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.489 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds