Wall clock time and date at job start Tue Mar 31 2020 10:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00327 * 2 1 4 4 H 1.48503 * 109.47353 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47196 * 299.99410 * 3 2 1 6 6 H 1.48505 * 109.47472 * 59.99698 * 3 2 1 7 7 C 1.37882 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99815 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99704 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.52568 * 299.91352 * 9 7 2 11 11 C 1.53042 * 109.49484 * 179.83464 * 9 7 2 12 12 C 1.53041 * 109.53762 * 178.68110 * 11 9 7 13 13 C 1.52766 * 109.38099 * 61.24136 * 12 11 9 14 14 N 1.46922 * 109.01055 * 305.58761 * 13 12 11 15 15 C 1.34769 * 120.63031 * 233.58432 * 14 13 12 16 16 O 1.21289 * 120.00200 * 179.71888 * 15 14 13 17 17 C 1.50703 * 120.00424 * 359.71907 * 15 14 13 18 18 S 1.80999 * 109.47490 * 180.02562 * 17 15 14 19 19 C 1.76196 * 99.99802 * 180.02562 * 18 17 15 20 20 N 1.30310 * 126.17485 * 359.95395 * 19 18 17 21 21 N 1.26090 * 117.60542 * 180.02562 * 20 19 18 22 22 C 1.29326 * 117.97651 * 359.97438 * 21 20 19 23 23 S 1.76481 * 107.87906 * 0.02562 * 22 21 20 24 24 C 1.46926 * 118.73504 * 53.30850 * 14 13 12 25 25 H 0.96998 * 119.99248 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46455 * 298.70342 * 11 9 7 27 27 H 1.08998 * 109.46001 * 58.67981 * 11 9 7 28 28 H 1.09001 * 109.49779 * 181.31877 * 12 11 9 29 29 H 1.09004 * 109.50220 * 301.38366 * 12 11 9 30 30 H 1.09000 * 109.50658 * 185.70203 * 13 12 11 31 31 H 1.08998 * 109.42650 * 65.42662 * 13 12 11 32 32 H 1.09005 * 109.46458 * 59.99874 * 17 15 14 33 33 H 1.09000 * 109.46795 * 300.00249 * 17 15 14 34 34 H 1.08002 * 126.05957 * 180.02562 * 22 21 20 35 35 H 1.08997 * 109.58741 * 66.43443 * 24 14 13 36 36 H 1.09007 * 109.58659 * 186.85750 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6247 -2.5582 0.8907 11 6 2.2448 -3.6629 -0.0030 12 6 1.4808 -4.9886 0.0302 13 6 0.6024 -5.0987 -1.2147 14 7 -0.2558 -3.9093 -1.3017 15 6 -1.5924 -4.0342 -1.4207 16 8 -2.2905 -3.0446 -1.4864 17 6 -2.2198 -5.4035 -1.4720 18 16 -4.0150 -5.2391 -1.6336 19 6 -4.4760 -6.9393 -1.6680 20 7 -3.6664 -7.9575 -1.5921 21 7 -4.1731 -9.1113 -1.6331 22 6 -5.4579 -9.2060 -1.7469 23 16 -6.1180 -7.5705 -1.8119 24 6 0.3704 -2.5812 -1.2504 25 1 -0.4849 0.8401 -0.0004 26 1 2.8541 -3.6174 -0.9056 27 1 2.8887 -3.5931 0.8737 28 1 2.1895 -5.8165 0.0513 29 1 0.8529 -5.0245 0.9205 30 1 -0.0177 -5.9924 -1.1448 31 1 1.2347 -5.1587 -2.1005 32 1 -1.9851 -5.9451 -0.5555 33 1 -1.8268 -5.9513 -2.3285 34 1 -6.0261 -10.1232 -1.7939 35 1 0.9834 -2.4316 -2.1392 36 1 -0.4027 -1.8142 -1.2039 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911070.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:43 Heat of formation + Delta-G solvation = 7.665144 kcal Electronic energy + Delta-G solvation = -21059.369668 eV Core-core repulsion = 17796.228675 eV Total energy + Delta-G solvation = -3263.140993 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 313.066 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.94194 -41.09374 -38.43994 -35.37787 -33.61262 -32.78085 -31.93418 -30.71924 -27.86144 -26.98232 -25.94903 -23.46909 -22.50055 -21.73989 -20.49071 -19.71667 -18.75635 -18.40272 -18.03417 -16.93332 -16.88390 -16.60265 -16.43440 -15.96079 -15.25522 -15.05494 -14.69077 -14.50366 -14.40255 -14.32321 -14.05909 -13.62059 -13.47402 -12.91559 -12.71786 -12.29938 -12.26605 -12.14134 -11.83446 -11.80897 -11.65708 -11.55828 -11.26343 -11.20340 -10.97293 -10.76499 -10.73158 -10.53015 -9.50928 -8.93133 -8.11708 -6.28186 -0.74953 -0.54175 0.11164 0.41935 0.76351 1.39424 1.41734 1.46317 1.50781 1.53182 2.11325 2.42055 3.16308 3.31713 3.50986 3.85553 3.87390 4.01699 4.16128 4.17786 4.32454 4.50882 4.59341 4.73050 4.79116 4.84195 5.09302 5.23200 5.26248 5.33818 5.51330 5.60086 5.88898 5.98272 6.31647 6.51112 6.84207 7.11352 7.42036 7.42152 8.91867 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.028051 B = 0.003063 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.938184 B = 9140.608045 C = 9978.908389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.010 3.990 3 Si 0.956 3.044 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.534 4.534 8 H 0.062 0.938 9 C 0.038 3.962 10 H -0.012 1.012 11 C -0.106 4.106 12 C -0.128 4.128 13 C 0.099 3.901 14 N -0.600 5.600 15 C 0.515 3.485 16 O -0.576 6.576 17 C -0.134 4.134 18 S 0.087 5.913 19 C -0.033 4.033 20 N -0.296 5.296 21 N -0.288 5.288 22 C 0.020 3.980 23 S 0.146 5.854 24 C 0.126 3.874 25 H 0.260 0.740 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.105 0.895 29 H 0.051 0.949 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.138 0.862 33 H 0.145 0.855 34 H 0.264 0.736 35 H 0.041 0.959 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.679 -20.075 -4.642 22.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.189 4.189 3 Si 0.782 3.218 4 H -0.185 1.185 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.573 4.573 8 H 0.080 0.920 9 C 0.019 3.981 10 H 0.006 0.994 11 C -0.144 4.144 12 C -0.166 4.166 13 C -0.022 4.022 14 N -0.331 5.331 15 C 0.302 3.698 16 O -0.456 6.456 17 C -0.286 4.286 18 S 0.317 5.683 19 C -0.420 4.420 20 N -0.138 5.138 21 N -0.121 5.121 22 C -0.284 4.284 23 S 0.384 5.616 24 C 0.004 3.996 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.123 0.877 29 H 0.070 0.930 30 H 0.126 0.874 31 H 0.104 0.896 32 H 0.156 0.844 33 H 0.163 0.837 34 H 0.280 0.720 35 H 0.059 0.941 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.509 -18.593 -4.716 21.872 hybrid contribution 1.061 0.295 0.265 1.132 sum -9.448 -18.299 -4.451 21.069 Atomic orbital electron populations 1.70079 1.07331 1.27202 1.50658 1.25877 0.95572 1.02852 0.94631 0.85526 0.79278 0.79571 0.77415 1.18520 1.20842 1.20942 1.21537 0.93293 0.91462 1.50995 0.92014 1.18914 0.93113 0.93825 0.92288 0.99396 1.21526 0.97702 0.94122 1.01029 1.21847 0.99057 0.98309 0.97350 1.22013 0.93943 0.86723 0.99548 1.48425 1.05393 1.09320 1.69971 1.20153 0.82864 0.89929 0.76873 1.90745 1.61827 1.40864 1.52191 1.23805 0.95714 0.98579 1.10521 1.86753 1.03777 0.89236 1.88571 1.31931 0.97444 1.06191 1.06455 1.71742 1.30335 0.93027 1.18723 1.70671 1.11042 1.15244 1.15175 1.31941 0.92815 1.02488 1.01202 1.85738 1.05910 1.01980 1.67997 1.21783 0.97298 0.82357 0.98200 0.93114 0.92309 0.92993 0.87714 0.92982 0.87356 0.89595 0.84375 0.83700 0.72039 0.94080 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.03 11.39 21.45 0.24 -54.79 16 2 C 0.01 0.57 5.30 84.66 0.45 1.02 16 3 Si 0.96 44.06 29.54 68.60 2.03 46.08 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 7 C -0.53 -29.11 8.56 25.60 0.22 -28.89 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 9 C 0.04 1.87 2.25 -11.46 -0.03 1.85 16 10 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 11 C -0.11 -3.99 5.11 30.62 0.16 -3.83 16 12 C -0.13 -3.63 6.07 30.53 0.19 -3.45 16 13 C 0.10 2.69 6.31 86.22 0.54 3.24 16 14 N -0.60 -22.97 2.98 -819.73 -2.44 -25.41 16 15 C 0.52 19.82 7.72 87.66 0.68 20.49 16 16 O -0.58 -27.87 15.28 -3.06 -0.05 -27.92 16 17 C -0.13 -3.66 4.05 71.24 0.29 -3.37 16 18 S 0.09 2.38 21.45 -56.49 -1.21 1.17 16 19 C -0.03 -0.76 7.85 130.47 1.02 0.26 16 20 N -0.30 -7.38 10.96 -54.83 -0.60 -7.98 16 21 N -0.29 -6.27 11.55 -57.40 -0.66 -6.93 16 22 C 0.02 0.26 12.68 130.61 1.66 1.91 16 23 S 0.15 2.24 23.54 -56.49 -1.33 0.91 16 24 C 0.13 6.11 5.40 86.36 0.47 6.58 16 25 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 26 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.10 2.18 8.14 -2.39 -0.02 2.17 16 29 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.11 2.21 5.94 -2.39 -0.01 2.19 16 31 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.14 3.36 7.68 -2.39 -0.02 3.34 16 33 H 0.15 3.28 7.95 -2.40 -0.02 3.26 16 34 H 0.26 0.58 8.06 -2.91 -0.02 0.56 16 35 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.08 4.65 5.12 -2.38 -0.01 4.64 16 Total: -1.00 -74.35 327.08 2.72 -71.63 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 1.10 Total: 7.41 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 5.64 Total: -4.19 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -3.46 Total: -95.11 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.05 Total: -27.92 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: 4.63 SS G_CDS: -2.54 Total: 2.09 kcal Total: -74.35 2.72 -71.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911070.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.297 kcal (2) G-P(sol) polarization free energy of solvation -74.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds