Wall clock time and date at job start Tue Mar 31 2020 10:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00318 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00009 * 3 2 1 5 5 H 1.48498 * 109.47251 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47156 * 119.99889 * 3 2 1 7 7 C 1.37885 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00272 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99559 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46431 * 175.84935 * 9 7 2 11 11 C 1.46901 * 111.00032 * 75.58641 * 10 9 7 12 12 C 1.50699 * 109.47031 * 189.99964 * 11 10 9 13 13 C 1.38216 * 119.99161 * 89.99830 * 12 11 10 14 14 C 1.38362 * 120.01630 * 179.97438 * 13 12 11 15 15 Cl 1.73597 * 120.00616 * 180.02562 * 14 13 12 16 16 C 1.38335 * 119.98561 * 359.97438 * 14 13 12 17 17 C 1.38333 * 119.97264 * 0.02562 * 16 14 13 18 18 Cl 1.73593 * 120.00677 * 179.97438 * 17 16 14 19 19 C 1.38228 * 119.98309 * 269.99764 * 12 11 10 20 20 C 1.46904 * 110.99933 * 199.53323 * 10 9 7 21 21 C 1.53001 * 109.46908 * 71.23196 * 20 10 9 22 22 C 1.53002 * 117.50013 * 244.20931 * 21 20 10 23 23 C 1.52996 * 117.50184 * 175.55078 * 21 20 10 24 24 H 0.97005 * 120.00030 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.46903 * 55.85516 * 9 7 2 26 26 H 1.08991 * 109.47541 * 295.84909 * 9 7 2 27 27 H 1.08994 * 109.47283 * 69.99681 * 11 10 9 28 28 H 1.09007 * 109.46524 * 309.99372 * 11 10 9 29 29 H 1.08000 * 119.98920 * 0.26950 * 13 12 11 30 30 H 1.07991 * 120.01216 * 179.97438 * 16 14 13 31 31 H 1.08002 * 119.99475 * 359.97438 * 19 12 11 32 32 H 1.08994 * 109.47410 * 191.23142 * 20 10 9 33 33 H 1.09001 * 109.47174 * 311.23355 * 20 10 9 34 34 H 1.09003 * 115.55019 * 29.87378 * 21 20 10 35 35 H 1.09000 * 117.49749 * 359.97438 * 22 21 20 36 36 H 1.09007 * 117.49871 * 145.01885 * 22 21 20 37 37 H 1.09005 * 117.49918 * 214.98356 * 23 21 20 38 38 H 1.09002 * 117.49796 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 7 2.2023 -3.6140 -0.0991 11 6 2.8853 -3.8393 1.1818 12 6 4.0175 -4.8137 0.9829 13 6 5.2782 -4.3507 0.6562 14 6 6.3182 -5.2448 0.4739 15 17 7.9016 -4.6630 0.0643 16 6 6.0962 -6.6025 0.6192 17 6 4.8343 -7.0653 0.9461 18 17 4.5545 -8.7689 1.1279 19 6 3.7948 -6.1703 1.1271 20 6 1.5333 -4.8375 -0.5612 21 6 1.1645 -4.6900 -2.0387 22 6 -0.3224 -4.6919 -2.3994 23 6 0.5491 -5.9039 -2.7378 24 1 -0.4850 0.8401 -0.0004 25 1 0.5700 -2.5255 -0.8502 26 1 0.6808 -2.5896 0.9251 27 1 2.1779 -4.2467 1.9040 28 1 3.2806 -2.8940 1.5539 29 1 5.4526 -3.2904 0.5479 30 1 6.9075 -7.3008 0.4766 31 1 2.8096 -6.5315 1.3828 32 1 2.2042 -5.6874 -0.4373 33 1 0.6286 -5.0003 0.0246 34 1 1.8241 -4.0515 -2.6265 35 1 -1.0379 -4.7986 -1.5840 36 1 -0.6410 -4.0550 -3.2246 37 1 0.8037 -6.0638 -3.7856 38 1 0.4074 -6.8077 -2.1452 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353433708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:54 Heat of formation + Delta-G solvation = 21.370227 kcal Electronic energy + Delta-G solvation = -21188.766286 eV Core-core repulsion = 17889.839426 eV Total energy + Delta-G solvation = -3298.926860 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 313.070 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.81518 -39.08199 -37.74152 -37.46722 -36.72576 -34.67421 -32.58694 -31.69652 -29.47385 -28.13099 -25.74061 -23.82153 -23.42595 -23.12330 -22.07324 -21.02927 -18.49632 -18.18859 -17.15838 -16.88460 -16.72645 -16.40922 -15.96846 -15.52509 -15.33343 -15.04423 -14.74241 -14.43261 -14.05437 -13.53630 -13.34863 -13.30784 -13.17161 -12.90665 -12.67214 -12.53749 -12.49954 -12.33900 -12.20032 -12.07291 -11.96026 -11.92275 -11.68916 -11.39104 -11.07528 -10.70083 -10.52740 -9.87343 -9.72004 -9.01008 -8.14792 -6.23559 -0.03160 0.03332 0.79268 1.26340 1.43318 1.45354 1.52781 2.35018 2.44282 2.95804 3.17522 3.36449 3.57486 3.90728 3.97171 3.98680 4.06514 4.11413 4.19194 4.23592 4.50068 4.55710 4.58722 4.70044 4.79666 4.81714 4.88701 4.96917 5.05264 5.06197 5.22401 5.27746 5.30991 5.43299 5.44208 5.52253 5.71495 6.12544 6.37705 6.64103 6.91404 7.45339 8.95174 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.010753 B = 0.004593 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.264974 B = 6094.831362 C = 7863.511652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.960 3.040 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.517 4.517 8 H 0.062 0.938 9 C 0.212 3.788 10 N -0.532 5.532 11 C 0.100 3.900 12 C -0.044 4.044 13 C -0.092 4.092 14 C -0.025 4.025 15 Cl -0.057 7.057 16 C -0.104 4.104 17 C -0.023 4.023 18 Cl -0.052 7.052 19 C -0.102 4.102 20 C 0.084 3.916 21 C -0.153 4.153 22 C -0.191 4.191 23 C -0.152 4.152 24 H 0.262 0.738 25 H 0.017 0.983 26 H -0.039 1.039 27 H 0.040 0.960 28 H 0.078 0.922 29 H 0.134 0.866 30 H 0.161 0.839 31 H 0.145 0.855 32 H 0.088 0.912 33 H 0.020 0.980 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.198 -16.315 0.747 19.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.192 4.192 3 Si 0.785 3.215 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.556 4.556 8 H 0.080 0.920 9 C 0.086 3.914 10 N -0.256 5.256 11 C -0.028 4.028 12 C -0.045 4.045 13 C -0.111 4.111 14 C -0.052 4.052 15 Cl -0.028 7.028 16 C -0.123 4.123 17 C -0.050 4.050 18 Cl -0.023 7.023 19 C -0.121 4.121 20 C -0.043 4.043 21 C -0.172 4.172 22 C -0.228 4.228 23 C -0.189 4.189 24 H 0.071 0.929 25 H 0.035 0.965 26 H -0.021 1.021 27 H 0.059 0.941 28 H 0.097 0.903 29 H 0.152 0.848 30 H 0.178 0.822 31 H 0.162 0.838 32 H 0.106 0.894 33 H 0.038 0.962 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.125 0.875 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 10.510 -16.163 0.387 19.283 hybrid contribution -0.578 1.055 0.549 1.322 sum 9.932 -15.107 0.936 18.104 Atomic orbital electron populations 1.70070 1.07564 1.27662 1.52067 1.25789 0.95592 1.02727 0.95129 0.85581 0.78263 0.78633 0.79020 1.19647 1.21187 1.19223 1.21442 0.93577 0.91083 1.49471 0.92006 1.19377 0.90007 0.88295 0.93720 1.62050 1.31085 1.05168 1.27314 1.20920 0.93224 0.97659 0.90973 1.19661 0.94110 0.93427 0.97346 1.21107 0.91318 1.00576 0.98142 1.20717 0.87314 0.93366 1.03808 1.98377 1.23570 1.88850 1.91989 1.21004 0.96846 0.93946 1.00505 1.20647 0.94386 0.85794 1.04186 1.98379 1.96428 1.11473 1.95978 1.21141 0.99322 0.91575 1.00088 1.21749 0.96532 0.92983 0.93079 1.22152 0.96022 1.02604 0.96411 1.22994 0.93754 1.02670 1.03373 1.23028 1.02212 0.92037 1.01646 0.92909 0.96469 1.02132 0.94141 0.90344 0.84796 0.82187 0.83760 0.89385 0.96161 0.89278 0.89713 0.89500 0.87532 0.87544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.23 13.29 21.45 0.28 -54.95 16 2 C 0.01 0.31 5.46 84.66 0.46 0.78 16 3 Si 0.96 43.72 29.54 68.60 2.03 45.74 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.52 -28.36 8.60 25.60 0.22 -28.14 16 8 H 0.06 3.31 7.67 -2.91 -0.02 3.29 16 9 C 0.21 10.80 4.59 85.56 0.39 11.19 16 10 N -0.53 -21.60 4.38 -905.37 -3.96 -25.56 16 11 C 0.10 3.51 4.94 85.56 0.42 3.94 16 12 C -0.04 -1.27 4.93 -19.87 -0.10 -1.37 16 13 C -0.09 -2.56 9.48 22.29 0.21 -2.35 16 14 C -0.03 -0.60 6.32 22.32 0.14 -0.46 16 15 Cl -0.06 -1.26 28.96 -2.72 -0.08 -1.34 16 16 C -0.10 -2.18 9.62 22.32 0.21 -1.96 16 17 C -0.02 -0.50 6.32 22.32 0.14 -0.36 16 18 Cl -0.05 -0.97 28.96 -2.72 -0.08 -1.05 16 19 C -0.10 -2.48 7.63 22.30 0.17 -2.30 16 20 C 0.08 2.89 5.07 86.30 0.44 3.33 16 21 C -0.15 -5.15 4.94 -10.79 -0.05 -5.20 16 22 C -0.19 -6.02 9.96 30.62 0.31 -5.71 16 23 C -0.15 -3.87 10.25 30.62 0.31 -3.55 16 24 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 25 H 0.02 0.96 6.91 -2.39 -0.02 0.94 16 26 H -0.04 -2.16 8.00 -2.39 -0.02 -2.18 16 27 H 0.04 1.37 8.06 -2.39 -0.02 1.35 16 28 H 0.08 3.03 7.27 -2.38 -0.02 3.02 16 29 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 30 H 0.16 2.66 8.06 -2.92 -0.02 2.63 16 31 H 0.14 3.20 7.75 -2.91 -0.02 3.17 16 32 H 0.09 2.61 5.17 -2.39 -0.01 2.60 16 33 H 0.02 0.71 7.80 -2.39 -0.02 0.69 16 34 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 35 H 0.08 2.72 8.03 -2.39 -0.02 2.70 16 36 H 0.09 2.75 8.14 -2.38 -0.02 2.73 16 37 H 0.11 2.35 8.14 -2.38 -0.02 2.33 16 38 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -59.51 348.20 2.53 -56.98 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 1.06 Total: 12.36 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 3.28 Total: -32.18 kcal Atomic # 7 Polarization: -76.83 SS G_CDS: -3.68 Total: -80.51 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 17 Polarization: -2.23 SS G_CDS: -0.16 Total: -2.39 kcal Total: -59.51 2.53 -56.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353433708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.348 kcal (2) G-P(sol) polarization free energy of solvation -59.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds