Wall clock time and date at job start Tue Mar 31 2020 11:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34223 * 116.99693 * 2 1 4 4 O 1.20828 * 120.00628 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99864 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47280 * 59.99529 * 5 3 2 7 7 C 1.52998 * 109.47347 * 299.99426 * 5 3 2 8 8 C 1.50705 * 109.47336 * 179.97438 * 5 3 2 9 9 C 1.38284 * 119.92291 * 59.72271 * 8 5 3 10 10 C 1.38098 * 120.07467 * 179.72574 * 9 8 5 11 11 C 1.38914 * 119.92391 * 0.55204 * 10 9 8 12 12 N 1.39674 * 120.07946 * 179.70490 * 11 10 9 13 13 S 1.65602 * 119.99552 * 313.84326 * 12 11 10 14 14 O 1.42096 * 106.40641 * 52.02804 * 13 12 11 15 15 O 1.42099 * 106.40155 * 184.94616 * 13 12 11 16 16 C 1.76196 * 107.21667 * 298.48334 * 13 12 11 17 17 H 1.08004 * 120.00429 * 5.21608 * 16 13 12 18 18 C 1.37883 * 120.00243 * 185.21504 * 16 13 12 19 19 N 1.31516 * 120.00041 * 180.02562 * 18 16 13 20 20 Si 1.86803 * 119.99708 * 0.02562 * 18 16 13 21 21 H 1.48492 * 109.46920 * 90.00203 * 20 18 16 22 22 H 1.48500 * 109.46908 * 210.00067 * 20 18 16 23 23 H 1.48495 * 109.46909 * 330.00015 * 20 18 16 24 24 C 1.38914 * 119.85016 * 359.72496 * 11 10 9 25 25 C 1.38108 * 119.92336 * 359.97438 * 24 11 10 26 26 H 1.08996 * 109.46852 * 300.00152 * 1 2 3 27 27 H 1.09000 * 109.46954 * 60.00838 * 1 2 3 28 28 H 1.09002 * 109.46926 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46705 * 60.00082 * 7 5 3 30 30 H 1.08998 * 109.47313 * 179.97438 * 7 5 3 31 31 H 1.08999 * 109.47014 * 300.00266 * 7 5 3 32 32 H 1.08000 * 119.96355 * 359.97438 * 9 8 5 33 33 H 1.08001 * 120.04226 * 180.27780 * 10 9 8 34 34 H 0.96998 * 120.00028 * 133.83662 * 12 11 10 35 35 H 0.97001 * 119.99838 * 179.97438 * 19 18 16 36 36 H 1.08003 * 120.03793 * 179.97438 * 24 11 10 37 37 H 1.07996 * 119.96276 * 180.02562 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.1139 0.5812 1.2483 8 6 3.9936 2.7201 -0.0011 9 6 3.6101 3.5532 1.0339 10 6 4.0047 4.8766 1.0394 11 6 4.7780 5.3735 -0.0020 12 7 5.1737 6.7131 -0.0028 13 16 4.0728 7.9017 0.3401 14 8 3.4567 7.5362 1.5673 15 8 4.7444 9.1388 0.1459 16 6 2.8157 7.8194 -0.8918 17 1 2.8289 7.0262 -1.6247 18 6 1.8151 8.7675 -0.9201 19 7 0.8765 8.7057 -1.8394 20 14 1.7925 10.1398 0.3471 21 1 2.5650 11.2997 -0.1657 22 1 0.3896 10.5538 0.6034 23 1 2.4049 9.6567 1.6107 24 6 5.1567 4.5353 -1.0430 25 6 4.7639 3.2113 -1.0392 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 3.8049 -0.4641 1.2483 30 1 5.2024 0.6379 1.2477 31 1 3.7245 1.0752 2.1385 32 1 3.0048 3.1674 1.8408 33 1 3.7086 5.5256 1.8503 34 1 6.0933 6.9470 -0.2040 35 1 0.1723 9.3725 -1.8591 36 1 5.7576 4.9186 -1.8545 37 1 5.0582 2.5590 -1.8480 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192986310.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:22 Heat of formation + Delta-G solvation = -139.806546 kcal Electronic energy + Delta-G solvation = -24030.863405 eV Core-core repulsion = 20286.281937 eV Total energy + Delta-G solvation = -3744.581468 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.086 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.70401 -39.11680 -36.60693 -35.79643 -35.27095 -34.56129 -33.07549 -32.84569 -30.60657 -28.22372 -27.62281 -26.42156 -24.58983 -22.59140 -22.01573 -20.12502 -19.22033 -17.77803 -17.58013 -17.10572 -16.81967 -16.71440 -16.37645 -15.22561 -15.18125 -14.76439 -14.25353 -13.79749 -13.74815 -13.54572 -13.36755 -13.07835 -12.89415 -12.76538 -12.67460 -12.38941 -12.06264 -11.93560 -11.52415 -11.42695 -11.12902 -10.95533 -10.90832 -10.80922 -10.63050 -10.47950 -10.29129 -10.05325 -9.76657 -9.23044 -9.03798 -8.55703 -7.81670 -6.79787 -5.34673 1.47132 1.77935 1.97934 2.24809 2.73141 3.07114 3.16461 3.23555 3.93471 4.06755 4.16733 4.49744 4.59090 4.70628 4.95789 5.02380 5.05267 5.10765 5.14482 5.28648 5.34593 5.42833 5.55538 5.60989 5.67852 5.77796 5.90723 6.00273 6.22974 6.27056 6.36593 6.49235 6.66666 6.83000 6.98463 7.25862 7.47776 7.67969 7.78465 8.23441 8.69524 10.32680 Molecular weight = 313.09amu Principal moments of inertia in cm(-1) A = 0.018142 B = 0.004329 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.014638 B = 6466.718717 C = 7335.164536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.363 6.363 3 C 0.455 3.545 4 O -0.482 6.482 5 C -0.032 4.032 6 H 0.113 0.887 7 C -0.141 4.141 8 C -0.110 4.110 9 C -0.063 4.063 10 C -0.146 4.146 11 C 0.182 3.818 12 N -1.064 6.064 13 S 2.668 3.332 14 O -0.999 6.999 15 O -1.004 7.004 16 C -1.008 5.008 17 H 0.124 0.876 18 C 0.153 3.847 19 N -0.818 5.818 20 Si 0.814 3.186 21 H -0.245 1.245 22 H -0.256 1.256 23 H -0.231 1.231 24 C -0.142 4.142 25 C -0.091 4.091 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.120 0.880 33 H 0.158 0.842 34 H 0.415 0.585 35 H 0.281 0.719 36 H 0.127 0.873 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.411 -17.894 2.971 18.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.296 3.704 4 O -0.366 6.366 5 C -0.051 4.051 6 H 0.131 0.869 7 C -0.198 4.198 8 C -0.112 4.112 9 C -0.082 4.082 10 C -0.167 4.167 11 C 0.085 3.915 12 N -0.810 5.810 13 S 2.771 3.229 14 O -0.989 6.989 15 O -0.994 6.994 16 C -1.143 5.143 17 H 0.142 0.858 18 C -0.067 4.067 19 N -0.447 5.447 20 Si 0.635 3.365 21 H -0.169 1.169 22 H -0.180 1.180 23 H -0.153 1.153 24 C -0.164 4.164 25 C -0.109 4.109 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.117 0.883 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.138 0.862 33 H 0.175 0.825 34 H 0.249 0.751 35 H 0.092 0.908 36 H 0.145 0.855 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.925 -16.891 3.669 17.973 hybrid contribution -0.423 0.614 -0.495 0.895 sum 4.502 -16.276 3.174 17.183 Atomic orbital electron populations 1.23249 0.76517 1.03350 1.02816 1.86474 1.23273 1.33708 1.84585 1.23812 0.92051 0.81432 0.73122 1.90794 1.66723 1.35999 1.43112 1.19853 0.87254 0.95416 1.02593 0.86878 1.21803 1.02115 1.00332 0.95554 1.19157 1.01679 0.93277 0.97042 1.20685 0.96954 0.92906 0.97647 1.21895 0.99764 0.96206 0.98878 1.17436 0.96925 0.83713 0.93448 1.53471 1.24536 1.16199 1.86773 1.01734 0.74226 0.70954 0.75944 1.93415 1.76218 1.82576 1.46650 1.93417 1.75986 1.41996 1.88044 1.30271 1.26534 1.23376 1.34154 0.85830 1.24424 0.92702 0.95566 0.94000 1.69991 1.10897 1.33393 1.30431 0.87675 0.80962 0.84510 0.83365 1.16904 1.18049 1.15341 1.21056 1.03821 0.93872 0.97623 1.20695 0.98065 0.95047 0.97130 0.91873 0.91831 0.88322 0.91191 0.90682 0.91772 0.86232 0.82452 0.75093 0.90828 0.85514 0.85959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.15 10.47 -39.24 -0.41 -4.56 16 3 C 0.45 6.19 7.12 36.01 0.26 6.45 16 4 O -0.48 -8.65 14.83 -18.75 -0.28 -8.93 16 5 C -0.03 -0.36 3.00 -92.92 -0.28 -0.64 16 6 H 0.11 0.97 7.87 -51.93 -0.41 0.56 16 7 C -0.14 -1.20 8.94 37.16 0.33 -0.87 16 8 C -0.11 -1.59 4.41 -104.59 -0.46 -2.05 16 9 C -0.06 -1.06 7.91 -39.62 -0.31 -1.37 16 10 C -0.15 -2.85 9.23 -39.38 -0.36 -3.21 16 11 C 0.18 3.46 6.13 -83.78 -0.51 2.94 16 12 N -1.06 -21.01 5.77 32.41 0.19 -20.82 16 13 S 2.67 67.35 4.11 -107.50 -0.44 66.90 16 14 O -1.00 -26.48 13.72 -57.18 -0.78 -27.27 16 15 O -1.00 -26.69 16.36 -57.18 -0.94 -27.63 16 16 C -1.01 -28.96 10.15 30.60 0.31 -28.65 16 17 H 0.12 3.66 8.06 -52.48 -0.42 3.24 16 18 C 0.15 4.49 5.47 -17.82 -0.10 4.39 16 19 N -0.82 -24.19 13.96 55.43 0.77 -23.42 16 20 Si 0.81 21.17 26.32 -169.99 -4.47 16.69 16 21 H -0.25 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.23 -6.04 5.89 56.52 0.33 -5.71 16 24 C -0.14 -2.27 9.97 -39.38 -0.39 -2.66 16 25 C -0.09 -1.26 9.66 -39.61 -0.38 -1.65 16 26 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 27 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.50 8.11 -51.93 -0.42 0.08 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.58 7.40 -51.93 -0.38 0.20 16 32 H 0.12 1.84 7.51 -52.49 -0.39 1.44 16 33 H 0.16 3.31 5.71 -52.49 -0.30 3.01 16 34 H 0.41 6.64 8.96 -34.48 -0.31 6.34 16 35 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.13 1.74 8.06 -52.48 -0.42 1.32 16 37 H 0.12 1.28 7.94 -52.49 -0.42 0.87 16 LS Contribution 328.67 15.07 4.95 4.95 Total: -1.00 -35.69 328.67 -6.62 -42.31 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -4.37 Total: 7.70 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: -0.84 Total: -25.93 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.96 Total: -44.24 kcal Atomic # 8 Polarization: -65.99 SS G_CDS: -2.41 Total: -68.39 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.47 Total: 16.69 kcal Atomic # 16 Polarization: 67.35 SS G_CDS: -0.44 Total: 66.90 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.69 -6.62 -42.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192986310.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.493 kcal (2) G-P(sol) polarization free energy of solvation -35.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds