Wall clock time and date at job start Tue Mar 31 2020 11:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.47349 * 2 1 4 4 C 1.50698 * 109.47116 * 120.00958 * 2 1 3 5 5 H 1.08001 * 120.00410 * 120.00133 * 4 2 1 6 6 C 1.37876 * 119.99483 * 299.98897 * 4 2 1 7 7 N 1.31511 * 120.00388 * 0.02562 * 6 4 2 8 8 Si 1.86810 * 119.99923 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47400 * 270.00556 * 8 6 4 10 10 H 1.48500 * 109.46954 * 30.00403 * 8 6 4 11 11 H 1.48500 * 109.47114 * 150.00214 * 8 6 4 12 12 N 1.46504 * 109.46726 * 240.00283 * 2 1 3 13 13 C 1.46507 * 119.99938 * 299.99967 * 12 2 1 14 14 C 1.34772 * 119.99949 * 119.99990 * 12 2 1 15 15 O 1.21583 * 120.00354 * 355.47089 * 14 12 2 16 16 C 1.47616 * 119.99898 * 175.46725 * 14 12 2 17 17 C 1.39701 * 120.08145 * 41.61447 * 16 14 12 18 18 C 1.37767 * 120.00122 * 179.97438 * 17 16 14 19 19 C 1.38852 * 120.21955 * 359.97438 * 18 17 16 20 20 C 1.39549 * 120.05891 * 0.02562 * 19 18 17 21 21 C 1.38126 * 119.97656 * 359.72071 * 20 19 18 22 22 O 1.36541 * 108.59196 * 179.97438 * 20 19 18 23 23 C 1.43976 * 105.45141 * 342.69383 * 22 20 19 24 24 F 1.39901 * 110.56616 * 268.61667 * 23 22 20 25 25 F 1.39899 * 110.68947 * 145.82371 * 23 22 20 26 26 O 1.36362 * 131.35334 * 180.02562 * 19 18 17 27 27 H 1.09004 * 109.46666 * 299.99495 * 1 2 3 28 28 H 1.09000 * 109.47391 * 59.99637 * 1 2 3 29 29 H 1.09005 * 109.47366 * 180.02562 * 1 2 3 30 30 H 0.97007 * 120.00237 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.46837 * 95.16747 * 13 12 2 32 32 H 1.08993 * 109.46867 * 215.16375 * 13 12 2 33 33 H 1.08996 * 109.46764 * 335.16823 * 13 12 2 34 34 H 1.07994 * 119.99926 * 359.96970 * 17 16 14 35 35 H 1.08001 * 119.88964 * 180.02562 * 18 17 16 36 36 H 1.07995 * 120.04893 * 180.29658 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.6533 -1.5887 1.1312 6 6 1.6994 -0.2395 2.4826 7 7 0.9431 0.8295 2.6034 8 14 2.3226 -1.1199 4.0078 9 1 1.3449 -2.1619 4.4122 10 1 3.6309 -1.7570 3.7117 11 1 2.4875 -0.1407 5.1120 12 7 2.0183 -0.6906 -1.1963 13 6 1.6643 -2.0932 -1.4281 14 6 2.7931 -0.0356 -2.0834 15 8 3.0192 1.1497 -1.9344 16 6 3.3673 -0.7573 -3.2360 17 6 2.5926 -1.6832 -3.9390 18 6 3.1300 -2.3554 -5.0147 19 6 4.4410 -2.1158 -5.4045 20 6 5.2201 -1.1922 -4.7065 21 6 4.6849 -0.5114 -3.6304 22 8 6.4569 -1.1422 -5.2827 23 6 6.5573 -2.3370 -6.0797 24 9 7.1241 -3.3777 -5.3361 25 9 7.3059 -2.0977 -7.2371 26 8 5.1907 -2.6409 -6.4153 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.7091 1.1612 3.4845 31 1 0.7894 -2.1447 -2.0761 32 1 2.5002 -2.6048 -1.9051 33 1 1.4399 -2.5734 -0.4758 34 1 1.5725 -1.8720 -3.6391 35 1 2.5294 -3.0705 -5.5572 36 1 5.2853 0.2072 -3.0923 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294515744.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:06 Heat of formation + Delta-G solvation = -159.175842 kcal Electronic energy + Delta-G solvation = -25940.990068 eV Core-core repulsion = 21641.728298 eV Total energy + Delta-G solvation = -4299.261770 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.096 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -49.77433 -48.23103 -42.52926 -39.77050 -37.41148 -37.29554 -35.53477 -33.02568 -31.14406 -30.68350 -28.96818 -26.45861 -25.61456 -25.29184 -24.19946 -23.45057 -21.59032 -19.76801 -19.54939 -19.06784 -18.65984 -17.61967 -16.67207 -16.32520 -15.98491 -15.74369 -15.37275 -15.15802 -14.94625 -14.62175 -14.47000 -14.44805 -14.36185 -14.18539 -13.88335 -13.66574 -13.43771 -12.91975 -12.62106 -12.42774 -12.15655 -11.69401 -11.63269 -11.27007 -11.12650 -10.89246 -10.79118 -10.34802 -10.24427 -9.36891 -9.30517 -9.20462 -8.73541 -8.50534 -7.76864 -6.14822 -4.23598 0.45140 0.81813 1.34364 1.87787 2.84438 3.22206 3.29898 3.31734 3.43672 3.59056 3.68887 3.77882 3.88672 4.33000 4.45606 4.58619 4.73108 4.80420 5.03444 5.16875 5.50579 5.60985 5.63539 5.68876 5.74048 5.88517 6.02476 6.25663 6.44923 6.67094 6.73977 6.95847 7.26427 7.40837 7.62563 7.91597 8.08606 8.34309 8.67773 8.85725 9.43277 10.90484 Molecular weight = 313.10amu Principal moments of inertia in cm(-1) A = 0.024022 B = 0.003216 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.320387 B = 8704.388210 C = 9074.239060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.066 0.934 4 C -0.530 4.530 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.580 5.580 13 C 0.074 3.926 14 C 0.547 3.453 15 O -0.538 6.538 16 C -0.092 4.092 17 C -0.075 4.075 18 C -0.087 4.087 19 C 0.035 3.965 20 C 0.018 3.982 21 C -0.033 4.033 22 O -0.284 6.284 23 C 0.570 3.430 24 F -0.154 7.154 25 F -0.118 7.118 26 O -0.287 6.287 27 H 0.095 0.905 28 H 0.013 0.987 29 H 0.031 0.969 30 H 0.264 0.736 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.159 0.841 35 H 0.149 0.851 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.625 -8.908 -15.834 18.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.083 0.917 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.310 5.310 13 C -0.069 4.069 14 C 0.332 3.668 15 O -0.417 6.417 16 C -0.095 4.095 17 C -0.093 4.093 18 C -0.106 4.106 19 C -0.009 4.009 20 C -0.025 4.025 21 C -0.052 4.052 22 O -0.204 6.204 23 C 0.461 3.539 24 F -0.136 7.136 25 F -0.099 7.099 26 O -0.206 6.206 27 H 0.113 0.887 28 H 0.032 0.968 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.176 0.824 35 H 0.167 0.833 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.803 -8.146 -15.764 18.383 hybrid contribution 0.788 -0.760 0.555 1.228 sum 5.591 -8.906 -15.209 18.490 Atomic orbital electron populations 1.22097 0.97856 0.99551 1.01035 1.19044 0.91128 0.94565 0.79441 0.91664 1.21299 1.32184 1.13218 0.90170 0.92088 1.24884 0.94844 0.94920 0.98996 1.69872 1.36126 1.22456 1.23926 0.86481 0.79229 0.79308 0.82313 1.20557 1.19882 1.21057 1.48217 1.47921 1.11710 1.23122 1.21941 0.98786 0.83247 1.02955 1.17902 0.79992 0.86803 0.82056 1.90790 1.60925 1.14829 1.75152 1.20074 0.93382 0.98000 0.98086 1.21579 1.01128 0.93355 0.93234 1.20046 0.90854 1.02023 0.97648 1.19783 0.95013 0.97196 0.88940 1.19329 0.83656 1.01503 0.98055 1.20079 0.94631 0.98573 0.91956 1.87655 1.33449 1.38295 1.60959 1.21888 0.79145 0.76938 0.75945 1.93277 1.85161 1.58533 1.76632 1.93244 1.75418 1.93958 1.47328 1.87573 1.15423 1.75685 1.41954 0.88687 0.96823 0.95022 0.92559 0.93381 0.92266 0.89509 0.82352 0.83338 0.82938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 8.97 37.16 0.33 -2.97 16 2 C 0.26 6.20 2.63 -69.08 -0.18 6.02 16 3 H 0.07 1.84 6.91 -51.93 -0.36 1.48 16 4 C -0.53 -13.60 7.95 -34.44 -0.27 -13.88 16 5 H 0.06 1.53 7.42 -52.49 -0.39 1.15 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.17 11.32 55.43 0.63 -23.55 16 8 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.58 -11.38 2.75 -176.46 -0.49 -11.86 16 13 C 0.07 1.09 7.87 59.85 0.47 1.56 16 14 C 0.55 10.60 7.31 -12.44 -0.09 10.51 16 15 O -0.54 -12.61 16.28 5.29 0.09 -12.52 16 16 C -0.09 -1.35 5.15 -104.97 -0.54 -1.89 16 17 C -0.07 -0.83 7.61 -39.21 -0.30 -1.13 16 18 C -0.09 -0.86 10.04 -39.53 -0.40 -1.26 16 19 C 0.03 0.42 7.16 -38.87 -0.28 0.14 16 20 C 0.02 0.24 7.14 -39.13 -0.28 -0.04 16 21 C -0.03 -0.47 9.66 -39.07 -0.38 -0.85 16 22 O -0.28 -3.78 11.35 -45.82 -0.52 -4.30 16 23 C 0.57 6.80 3.69 101.05 0.37 7.17 16 24 F -0.15 -1.82 17.57 2.25 0.04 -1.79 16 25 F -0.12 -1.31 17.57 2.25 0.04 -1.27 16 26 O -0.29 -3.44 11.33 -45.24 -0.51 -3.96 16 27 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 28 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.03 0.64 7.67 -51.93 -0.40 0.25 16 30 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.05 0.57 6.85 -51.93 -0.36 0.21 16 32 H 0.06 0.73 6.00 -51.93 -0.31 0.42 16 33 H 0.09 1.39 7.10 -51.93 -0.37 1.02 16 34 H 0.16 1.47 5.52 -52.49 -0.29 1.18 16 35 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 315.61 15.07 4.76 4.76 Total: -1.00 -29.48 315.61 -5.82 -35.30 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -3.19 Total: -1.14 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -1.63 Total: 5.04 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.14 Total: -35.41 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.95 Total: -20.78 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.08 Total: -3.05 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.48 -5.82 -35.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294515744.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.875 kcal (2) G-P(sol) polarization free energy of solvation -29.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds