Wall clock time and date at job start Tue Mar 31 2020 11:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45198 * 109.47454 * 2 1 4 4 C 1.34706 * 117.00555 * 180.02562 * 3 2 1 5 5 O 1.21480 * 119.99830 * 0.02562 * 4 3 2 6 6 C 1.47716 * 120.00509 * 180.02562 * 4 3 2 7 7 C 1.40075 * 120.56974 * 179.97438 * 6 4 3 8 8 C 1.38340 * 118.29112 * 180.02562 * 7 6 4 9 9 C 1.38360 * 119.30463 * 359.97438 * 8 7 6 10 10 C 1.50699 * 119.45702 * 180.02562 * 9 8 7 11 11 O 1.42907 * 109.46983 * 0.02562 * 10 9 8 12 12 C 1.42900 * 113.99983 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.47153 * 29.99779 * 12 11 10 14 14 C 1.50692 * 109.46860 * 149.99808 * 12 11 10 15 15 H 1.08002 * 120.00846 * 359.97438 * 14 12 11 16 16 C 1.37880 * 120.00020 * 179.97438 * 14 12 11 17 17 N 1.31516 * 119.99843 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 120.00271 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46989 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47142 * 119.99786 * 18 16 14 21 21 H 1.48500 * 109.47098 * 239.99792 * 18 16 14 22 22 C 1.53001 * 109.46922 * 269.99493 * 12 11 10 23 23 Cl 1.80297 * 109.47069 * 65.00139 * 22 12 11 24 24 N 1.31939 * 121.09156 * 0.02562 * 9 8 7 25 25 C 1.31684 * 121.88322 * 359.97438 * 24 9 8 26 26 H 1.08999 * 109.47146 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46843 * 300.00165 * 1 2 3 28 28 H 1.08998 * 109.47221 * 59.99696 * 1 2 3 29 29 H 1.09002 * 109.47541 * 240.00086 * 2 1 3 30 30 H 1.08998 * 109.47221 * 120.00304 * 2 1 3 31 31 H 1.08007 * 120.85484 * 0.04472 * 7 6 4 32 32 H 1.08000 * 120.35093 * 179.97438 * 8 7 6 33 33 H 1.09004 * 109.47358 * 119.99773 * 10 9 8 34 34 H 1.08997 * 109.47355 * 240.00405 * 10 9 8 35 35 H 0.97000 * 120.00112 * 180.02562 * 17 16 14 36 36 H 1.08994 * 109.47233 * 184.99838 * 22 12 11 37 37 H 1.09004 * 109.47169 * 305.00316 * 22 12 11 38 38 H 1.08003 * 119.71511 * 179.97438 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3495 1.5455 -0.0005 5 8 4.0895 0.5821 -0.0015 6 6 3.9141 2.9104 0.0000 7 6 5.3009 3.1077 0.0000 8 6 5.7785 4.4060 0.0011 9 6 4.8799 5.4581 0.0015 10 6 5.3964 6.8739 0.0021 11 8 6.8254 6.8596 0.0014 12 6 7.4197 8.1591 0.0025 13 1 6.7616 8.8591 0.5173 14 6 8.7478 8.1035 0.7122 15 1 9.1026 7.1693 1.1220 16 6 9.5103 9.2453 0.8386 17 7 9.0787 10.3829 0.3392 18 14 11.1564 9.1766 1.7190 19 1 11.4106 7.7899 2.1857 20 1 12.2347 9.5907 0.7857 21 1 11.1323 10.0946 2.8860 22 6 7.6312 8.6243 -1.4397 23 17 6.0314 8.8320 -2.2449 24 7 3.5783 5.2425 0.0015 25 6 3.0749 4.0256 0.0005 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 5.9799 2.2677 -0.0011 32 1 6.8416 4.5965 0.0015 33 1 5.0382 7.3917 -0.8877 34 1 5.0384 7.3909 0.8923 35 1 9.6153 11.1861 0.4278 36 1 8.1643 9.5750 -1.4403 37 1 8.2158 7.8795 -1.9797 38 1 2.0035 3.8895 0.0010 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222976607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:39 Heat of formation + Delta-G solvation = -115.486578 kcal Electronic energy + Delta-G solvation = -22776.506631 eV Core-core repulsion = 19030.936050 eV Total energy + Delta-G solvation = -3745.570581 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.091 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.88660 -39.75282 -37.31851 -36.78665 -34.82974 -33.52806 -32.77151 -32.21460 -31.53673 -29.22629 -26.96533 -25.28558 -23.99696 -23.65116 -22.54954 -21.08714 -20.92751 -18.30439 -17.32446 -16.89626 -16.79741 -16.39422 -15.68013 -15.51104 -15.10695 -14.53968 -14.43026 -14.42087 -13.76953 -13.51554 -13.31205 -13.13481 -13.06974 -12.50810 -12.28504 -12.11705 -12.05736 -11.93875 -11.55302 -11.20795 -11.07444 -10.91372 -10.82601 -10.81502 -10.46315 -10.07952 -9.94938 -9.49732 -9.46745 -9.39001 -9.05322 -8.67848 -8.18585 -6.38981 -4.45670 0.47697 1.27759 2.37039 2.40686 3.12732 3.22593 3.27397 3.40023 3.78450 3.87112 4.20622 4.47204 4.59830 4.65217 4.73708 4.83494 4.91250 4.93212 4.98110 5.18343 5.31696 5.43028 5.54275 5.63204 5.83414 5.93693 6.01289 6.05696 6.14553 6.22079 6.29898 6.41766 6.62305 6.81482 7.21696 7.52297 7.56376 7.85135 7.89996 8.20522 8.70166 9.22399 10.68188 Molecular weight = 313.09amu Principal moments of inertia in cm(-1) A = 0.022120 B = 0.002747 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.504055 B =10189.766997 C =11086.393500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.354 6.354 4 C 0.520 3.480 5 O -0.509 6.509 6 C -0.201 4.201 7 C -0.013 4.013 8 C -0.157 4.157 9 C 0.179 3.821 10 C 0.089 3.911 11 O -0.385 6.385 12 C 0.217 3.783 13 H 0.035 0.965 14 C -0.515 4.515 15 H 0.075 0.925 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.912 3.088 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.281 1.281 22 C -0.033 4.033 23 Cl -0.249 7.249 24 N -0.492 5.492 25 C 0.162 3.838 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.147 0.853 32 H 0.161 0.839 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.270 0.730 36 H 0.129 0.871 37 H 0.073 0.927 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.351 -13.896 -1.238 18.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.271 6.271 4 C 0.365 3.635 5 O -0.398 6.398 6 C -0.204 4.204 7 C -0.038 4.038 8 C -0.176 4.176 9 C 0.043 3.957 10 C 0.012 3.988 11 O -0.305 6.305 12 C 0.161 3.839 13 H 0.053 0.947 14 C -0.553 4.553 15 H 0.093 0.907 16 C -0.142 4.142 17 N -0.528 5.528 18 Si 0.739 3.261 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.206 1.206 22 C -0.096 4.096 23 Cl -0.224 7.224 24 N -0.202 5.202 25 C 0.002 3.998 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.164 0.836 32 H 0.179 0.821 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.147 0.853 37 H 0.092 0.908 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -12.641 -13.435 -1.313 18.494 hybrid contribution 1.241 -0.605 0.314 1.416 sum -11.400 -14.040 -0.999 18.113 Atomic orbital electron populations 1.21815 0.92445 1.03028 1.03723 1.23049 0.95413 0.79871 1.02733 1.86534 1.23730 1.32563 1.84298 1.20955 0.80537 0.89520 0.72466 1.90830 1.60404 1.42387 1.46211 1.20052 0.95168 0.91313 1.13887 1.21755 0.93307 0.98236 0.90534 1.22106 1.03486 0.91222 1.00800 1.21611 0.88458 0.96927 0.88669 1.21417 0.84539 0.89841 1.02995 1.87770 1.15376 1.32177 1.95159 1.20051 0.94235 0.79593 0.90063 0.94681 1.21083 1.02299 0.96296 1.35629 0.90689 1.25003 0.98948 0.94865 0.95380 1.69813 1.38392 0.99801 1.44755 0.86192 0.82139 0.78541 0.79220 1.19351 1.20651 1.20636 1.25920 0.81540 1.06351 0.95742 1.98608 1.41287 1.98131 1.84342 1.67426 1.14505 1.23990 1.14308 1.23068 1.00328 0.86149 0.90209 0.90181 0.91331 0.91326 0.91115 0.91113 0.83561 0.82096 0.88871 0.91282 0.92028 0.85275 0.90846 0.81443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.29 37.16 0.38 -0.46 16 2 C 0.06 0.52 6.19 37.16 0.23 0.75 16 3 O -0.35 -3.85 9.50 -40.51 -0.38 -4.23 16 4 C 0.52 6.76 7.91 34.60 0.27 7.03 16 5 O -0.51 -7.63 16.21 -19.25 -0.31 -7.94 16 6 C -0.20 -2.69 5.89 -104.84 -0.62 -3.30 16 7 C -0.01 -0.18 9.72 -38.86 -0.38 -0.56 16 8 C -0.16 -2.42 9.40 -39.50 -0.37 -2.79 16 9 C 0.18 3.00 6.78 -82.50 -0.56 2.44 16 10 C 0.09 1.66 6.08 36.01 0.22 1.88 16 11 O -0.39 -8.13 8.39 -35.23 -0.30 -8.42 16 12 C 0.22 5.07 2.38 -27.89 -0.07 5.00 16 13 H 0.04 0.88 7.79 -51.93 -0.40 0.48 16 14 C -0.52 -13.04 8.89 -34.44 -0.31 -13.34 16 15 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 16 C 0.06 1.53 5.29 -17.82 -0.09 1.43 16 17 N -0.89 -22.99 11.29 55.43 0.63 -22.37 16 18 Si 0.91 19.70 29.54 -169.99 -5.02 14.68 16 19 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 C -0.03 -0.73 6.17 37.16 0.23 -0.50 16 23 Cl -0.25 -4.96 26.09 -51.86 -1.35 -6.31 16 24 N -0.49 -7.75 10.25 -9.12 -0.09 -7.84 16 25 C 0.16 2.14 10.79 -17.12 -0.18 1.95 16 26 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.15 1.80 7.74 -52.48 -0.41 1.39 16 32 H 0.16 2.55 6.98 -52.49 -0.37 2.18 16 33 H 0.09 1.77 5.09 -51.93 -0.26 1.50 16 34 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 35 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 36 H 0.13 3.10 5.95 -51.93 -0.31 2.80 16 37 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 38 H 0.17 1.74 7.62 -52.48 -0.40 1.34 16 LS Contribution 342.58 15.07 5.16 5.16 Total: -1.00 -27.28 342.58 -7.56 -34.84 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -4.65 Total: 2.91 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -1.24 Total: -0.47 kcal Atomic # 7 Polarization: -30.74 SS G_CDS: 0.53 Total: -30.21 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.99 Total: -20.60 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Atomic # 17 Polarization: -4.96 SS G_CDS: -1.35 Total: -6.31 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.28 -7.56 -34.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222976607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.642 kcal (2) G-P(sol) polarization free energy of solvation -27.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds