Wall clock time and date at job start Tue Mar 31 2020 10:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47159 * 2 1 4 4 H 1.08999 * 109.47117 * 305.88303 * 3 2 1 5 5 C 1.53001 * 109.47072 * 185.88437 * 3 2 1 6 6 N 1.46497 * 109.47221 * 174.60955 * 5 3 2 7 7 S 1.65605 * 119.99972 * 165.01448 * 6 5 3 8 8 O 1.42098 * 106.40207 * 311.46469 * 7 6 5 9 9 O 1.42103 * 106.39751 * 178.54490 * 7 6 5 10 10 C 1.76193 * 107.21537 * 65.00748 * 7 6 5 11 11 C 1.38665 * 119.87156 * 269.72349 * 10 7 6 12 12 C 1.38614 * 120.49534 * 179.72418 * 11 10 7 13 13 C 1.37636 * 120.25215 * 0.55176 * 12 11 10 14 14 C 1.40696 * 119.74151 * 359.72676 * 13 12 11 15 15 C 1.41404 * 120.24151 * 180.02562 * 14 13 12 16 16 H 1.07994 * 119.99793 * 209.22230 * 15 14 13 17 17 C 1.39939 * 119.99869 * 29.22280 * 15 14 13 18 18 N 1.30824 * 120.00153 * 10.03053 * 17 15 14 19 19 Si 1.86806 * 119.99900 * 190.02794 * 17 15 14 20 20 H 1.48500 * 109.47051 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47192 * 120.00162 * 19 17 15 22 22 H 1.48497 * 109.47045 * 240.00256 * 19 17 15 23 23 C 1.37591 * 119.88098 * 90.00016 * 10 7 6 24 24 O 1.42897 * 109.46988 * 65.88669 * 3 2 1 25 25 C 1.42901 * 114.00081 * 223.87241 * 24 3 2 26 26 H 1.09003 * 109.47362 * 184.64327 * 1 2 3 27 27 H 1.08998 * 109.47210 * 304.63961 * 1 2 3 28 28 H 1.09002 * 109.47477 * 64.64149 * 1 2 3 29 29 H 1.09000 * 109.47016 * 240.00211 * 2 1 3 30 30 H 1.08999 * 109.47175 * 120.00371 * 2 1 3 31 31 H 1.09004 * 109.46904 * 54.61509 * 5 3 2 32 32 H 1.09001 * 109.47246 * 294.61707 * 5 3 2 33 33 H 0.97006 * 120.00133 * 345.02509 * 6 5 3 34 34 H 1.07994 * 119.74953 * 359.97438 * 11 10 7 35 35 H 1.08005 * 119.87682 * 180.25832 * 12 11 10 36 36 H 1.07999 * 120.12845 * 179.70533 * 13 12 11 37 37 H 0.97008 * 119.99564 * 180.02562 * 18 17 15 38 38 H 1.08001 * 120.12501 * 359.97438 * 23 10 7 39 39 H 1.08992 * 109.46757 * 63.46680 * 25 24 3 40 40 H 1.08999 * 109.46709 * 183.46778 * 25 24 3 41 41 H 1.09003 * 109.47023 * 303.46445 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5932 1.9858 -0.8326 5 6 3.5628 1.4450 -0.1479 6 7 4.0386 2.8245 -0.2772 7 16 5.6468 3.1676 -0.0806 8 8 6.0505 2.5238 1.1201 9 8 5.7886 4.5645 -0.2991 10 6 6.5142 2.3686 -1.3897 11 6 6.9852 1.0758 -1.2180 12 6 7.6643 0.4329 -2.2413 13 6 7.8882 1.0771 -3.4367 14 6 7.4199 2.3911 -3.6200 15 6 7.6436 3.0627 -4.8441 16 1 7.7339 4.1387 -4.8610 17 6 7.7481 2.3330 -6.0336 18 7 7.4463 1.0601 -6.0488 19 14 8.3184 3.1765 -7.5998 20 1 8.5961 4.6078 -7.3181 21 1 9.5559 2.5203 -8.0930 22 1 7.2570 3.0717 -8.6330 23 6 6.7267 3.0319 -2.5763 24 8 1.6798 2.0750 1.2297 25 6 1.1713 3.4014 1.0740 26 1 -0.3634 -1.0243 0.0832 27 1 -0.3633 0.5841 0.8455 28 1 -0.3634 0.4401 -0.9286 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8424 0.8795 -1.0368 32 1 4.0140 0.9859 0.7317 33 1 3.4117 3.5371 -0.4778 34 1 6.8182 0.5645 -0.2816 35 1 8.0232 -0.5757 -2.0982 36 1 8.4217 0.5760 -4.2309 37 1 7.5191 0.5543 -6.8733 38 1 6.3625 4.0403 -2.7064 39 1 0.2436 3.3700 0.5027 40 1 0.9792 3.8344 2.0556 41 1 1.9034 4.0114 0.5448 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589302105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:23 Heat of formation + Delta-G solvation = -116.371530 kcal Electronic energy + Delta-G solvation = -24211.296250 eV Core-core repulsion = 20603.564096 eV Total energy + Delta-G solvation = -3607.732154 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.84684 -37.66916 -36.65339 -35.29621 -34.76420 -33.82047 -33.37884 -30.08123 -29.81290 -28.51753 -26.32159 -25.49745 -23.32389 -21.93367 -21.35287 -20.99781 -19.05091 -17.98306 -17.15903 -16.95866 -16.19836 -15.91310 -15.38966 -15.15631 -14.89127 -14.68941 -14.21211 -13.93261 -13.55674 -13.46056 -13.36753 -13.32380 -12.59168 -12.33125 -12.07856 -11.93142 -11.62021 -11.59775 -11.50108 -11.40815 -11.36404 -11.32549 -11.22340 -10.97628 -10.92346 -10.80856 -10.60353 -9.82185 -9.73303 -9.62514 -9.42166 -9.10246 -8.05838 -7.67412 -6.88013 -4.57169 1.02432 2.16828 2.60317 3.00252 3.03131 3.06080 3.55015 3.64165 3.83557 4.24757 4.44784 4.58749 4.79486 4.88694 5.05341 5.14536 5.20343 5.26891 5.33297 5.39033 5.55099 5.58404 5.68045 5.73855 5.82429 5.93005 6.01216 6.07572 6.14050 6.15962 6.62634 6.74459 6.81252 7.03660 7.07655 7.16400 7.21150 7.35038 7.69601 7.81120 7.92815 8.39627 8.66688 8.70870 10.07091 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.015604 B = 0.003827 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.984833 B = 7314.960076 C = 7868.014660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.083 3.917 4 H 0.070 0.930 5 C 0.102 3.898 6 N -1.120 6.120 7 S 2.690 3.310 8 O -0.973 6.973 9 O -0.974 6.974 10 C -0.636 4.636 11 C -0.142 4.142 12 C -0.124 4.124 13 C -0.109 4.109 14 C 0.090 3.910 15 C -0.462 4.462 16 H 0.082 0.918 17 C 0.072 3.928 18 N -0.805 5.805 19 Si 0.914 3.086 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.274 1.274 23 C -0.119 4.119 24 O -0.376 6.376 25 C 0.029 3.971 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.408 0.592 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.127 0.873 37 H 0.281 0.719 38 H 0.112 0.888 39 H 0.041 0.959 40 H 0.085 0.915 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.412 -1.566 6.347 13.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.024 3.976 4 H 0.088 0.912 5 C -0.025 4.025 6 N -0.878 5.878 7 S 2.785 3.215 8 O -0.963 6.963 9 O -0.965 6.965 10 C -0.728 4.728 11 C -0.164 4.164 12 C -0.144 4.144 13 C -0.129 4.129 14 C 0.086 3.914 15 C -0.492 4.492 16 H 0.100 0.900 17 C -0.144 4.144 18 N -0.431 5.431 19 Si 0.738 3.262 20 H -0.183 1.183 21 H -0.197 1.197 22 H -0.199 1.199 23 C -0.140 4.140 24 O -0.295 6.295 25 C -0.068 4.068 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.242 0.758 34 H 0.125 0.875 35 H 0.117 0.883 36 H 0.145 0.855 37 H 0.092 0.908 38 H 0.130 0.870 39 H 0.059 0.941 40 H 0.104 0.896 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.940 -1.478 7.100 13.125 hybrid contribution 0.014 0.287 -1.876 1.898 sum -10.926 -1.190 5.224 12.169 Atomic orbital electron populations 1.21718 0.95302 1.01831 1.01864 1.21687 0.96609 0.94755 1.03492 1.22409 0.93248 0.94716 0.87258 0.91169 1.21793 0.95246 0.82508 1.02941 1.55573 1.27230 1.15038 1.89954 1.01650 0.72110 0.73240 0.74457 1.93514 1.81129 1.77232 1.44386 1.93534 1.85240 1.30740 1.86938 1.29764 1.19821 1.07590 1.15646 1.20142 1.04343 0.93275 0.98597 1.20847 1.00626 0.98509 0.94375 1.21711 0.99148 0.96347 0.95689 1.17713 0.89213 0.92267 0.92161 1.19641 1.43486 0.95238 0.90847 0.89994 1.25900 0.92529 0.94777 1.01187 1.69746 1.35623 1.08280 1.29479 0.86155 0.79018 0.80645 0.80332 1.18324 1.19692 1.19890 1.20848 1.01065 0.99127 0.92961 1.87934 1.83684 1.28133 1.29755 1.22873 0.97312 0.84076 1.02563 0.92550 0.92176 0.93011 0.90124 0.90563 0.90248 0.89418 0.75755 0.87475 0.88282 0.85504 0.90769 0.87022 0.94067 0.89639 0.93988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.86 37.15 0.37 -0.89 16 2 C -0.13 -1.21 5.64 -26.73 -0.15 -1.36 16 3 C 0.08 0.91 2.27 -26.73 -0.06 0.85 16 4 H 0.07 0.69 7.67 -51.93 -0.40 0.30 16 5 C 0.10 1.35 5.89 -4.04 -0.02 1.32 16 6 N -1.12 -16.47 5.87 -10.61 -0.06 -16.54 16 7 S 2.69 50.76 5.74 -107.50 -0.62 50.14 16 8 O -0.97 -20.11 16.73 -57.17 -0.96 -21.07 16 9 O -0.97 -20.51 17.27 -57.17 -0.99 -21.50 16 10 C -0.64 -13.75 5.94 -39.66 -0.24 -13.99 16 11 C -0.14 -3.04 9.53 -39.29 -0.37 -3.41 16 12 C -0.12 -2.74 10.02 -39.66 -0.40 -3.13 16 13 C -0.11 -2.68 8.66 -38.87 -0.34 -3.02 16 14 C 0.09 2.30 5.55 -106.82 -0.59 1.71 16 15 C -0.46 -11.80 9.06 -37.74 -0.34 -12.15 16 16 H 0.08 2.03 7.87 -52.49 -0.41 1.61 16 17 C 0.07 1.74 5.26 -17.34 -0.09 1.65 16 18 N -0.81 -19.76 10.84 55.55 0.60 -19.16 16 19 Si 0.91 18.05 29.57 -169.99 -5.03 13.03 16 20 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 21 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 22 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 23 C -0.12 -2.83 9.26 -38.88 -0.36 -3.19 16 24 O -0.38 -4.49 9.79 -35.23 -0.34 -4.83 16 25 C 0.03 0.27 10.67 101.05 1.08 1.35 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.53 7.73 -51.93 -0.40 0.13 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.09 1.21 7.75 -51.93 -0.40 0.81 16 33 H 0.41 5.12 6.73 -34.48 -0.23 4.89 16 34 H 0.11 2.05 7.59 -52.49 -0.40 1.66 16 35 H 0.10 1.90 8.06 -52.48 -0.42 1.48 16 36 H 0.13 3.18 6.23 -52.49 -0.33 2.86 16 37 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 38 H 0.11 2.56 7.60 -52.49 -0.40 2.16 16 39 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.04 0.39 6.20 -51.93 -0.32 0.07 16 LS Contribution 353.46 15.07 5.33 5.33 Total: -1.00 -30.72 353.46 -9.40 -40.11 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -5.81 Total: 8.72 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: -1.52 Total: -34.24 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.54 Total: -35.69 kcal Atomic # 8 Polarization: -45.11 SS G_CDS: -2.29 Total: -47.40 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.03 kcal Atomic # 16 Polarization: 50.76 SS G_CDS: -0.62 Total: 50.14 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.72 -9.40 -40.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589302105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.259 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds