Wall clock time and date at job start Tue Mar 31 2020 10:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47159 * 2 1 4 4 H 1.08999 * 109.47117 * 305.88303 * 3 2 1 5 5 C 1.53001 * 109.47072 * 185.88437 * 3 2 1 6 6 N 1.46497 * 109.47221 * 174.60955 * 5 3 2 7 7 S 1.65605 * 119.99972 * 165.01448 * 6 5 3 8 8 O 1.42098 * 106.40207 * 311.46469 * 7 6 5 9 9 O 1.42103 * 106.39751 * 178.54490 * 7 6 5 10 10 C 1.76193 * 107.21537 * 65.00748 * 7 6 5 11 11 C 1.38665 * 119.87156 * 269.72349 * 10 7 6 12 12 C 1.38614 * 120.49534 * 179.72418 * 11 10 7 13 13 C 1.37636 * 120.25215 * 0.55176 * 12 11 10 14 14 C 1.40696 * 119.74151 * 359.72676 * 13 12 11 15 15 C 1.41404 * 120.24151 * 180.02562 * 14 13 12 16 16 H 1.07994 * 119.99793 * 209.22230 * 15 14 13 17 17 C 1.39939 * 119.99869 * 29.22280 * 15 14 13 18 18 N 1.30824 * 120.00153 * 10.03053 * 17 15 14 19 19 Si 1.86806 * 119.99900 * 190.02794 * 17 15 14 20 20 H 1.48500 * 109.47051 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47192 * 120.00162 * 19 17 15 22 22 H 1.48497 * 109.47045 * 240.00256 * 19 17 15 23 23 C 1.37591 * 119.88098 * 90.00016 * 10 7 6 24 24 O 1.42897 * 109.46988 * 65.88669 * 3 2 1 25 25 C 1.42901 * 114.00081 * 223.87241 * 24 3 2 26 26 H 1.09003 * 109.47362 * 184.64327 * 1 2 3 27 27 H 1.08998 * 109.47210 * 304.63961 * 1 2 3 28 28 H 1.09002 * 109.47477 * 64.64149 * 1 2 3 29 29 H 1.09000 * 109.47016 * 240.00211 * 2 1 3 30 30 H 1.08999 * 109.47175 * 120.00371 * 2 1 3 31 31 H 1.09004 * 109.46904 * 54.61509 * 5 3 2 32 32 H 1.09001 * 109.47246 * 294.61707 * 5 3 2 33 33 H 0.97006 * 120.00133 * 345.02509 * 6 5 3 34 34 H 1.07994 * 119.74953 * 359.97438 * 11 10 7 35 35 H 1.08005 * 119.87682 * 180.25832 * 12 11 10 36 36 H 1.07999 * 120.12845 * 179.70533 * 13 12 11 37 37 H 0.97008 * 119.99564 * 180.02562 * 18 17 15 38 38 H 1.08001 * 120.12501 * 359.97438 * 23 10 7 39 39 H 1.08992 * 109.46757 * 63.46680 * 25 24 3 40 40 H 1.08999 * 109.46709 * 183.46778 * 25 24 3 41 41 H 1.09003 * 109.47023 * 303.46445 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5932 1.9858 -0.8326 5 6 3.5628 1.4450 -0.1479 6 7 4.0386 2.8245 -0.2772 7 16 5.6468 3.1676 -0.0806 8 8 6.0505 2.5238 1.1201 9 8 5.7886 4.5645 -0.2991 10 6 6.5142 2.3686 -1.3897 11 6 6.9852 1.0758 -1.2180 12 6 7.6643 0.4329 -2.2413 13 6 7.8882 1.0771 -3.4367 14 6 7.4199 2.3911 -3.6200 15 6 7.6436 3.0627 -4.8441 16 1 7.7339 4.1387 -4.8610 17 6 7.7481 2.3330 -6.0336 18 7 7.4463 1.0601 -6.0488 19 14 8.3184 3.1765 -7.5998 20 1 8.5961 4.6078 -7.3181 21 1 9.5559 2.5203 -8.0930 22 1 7.2570 3.0717 -8.6330 23 6 6.7267 3.0319 -2.5763 24 8 1.6798 2.0750 1.2297 25 6 1.1713 3.4014 1.0740 26 1 -0.3634 -1.0243 0.0832 27 1 -0.3633 0.5841 0.8455 28 1 -0.3634 0.4401 -0.9286 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8424 0.8795 -1.0368 32 1 4.0140 0.9859 0.7317 33 1 3.4117 3.5371 -0.4778 34 1 6.8182 0.5645 -0.2816 35 1 8.0232 -0.5757 -2.0982 36 1 8.4217 0.5760 -4.2309 37 1 7.5191 0.5543 -6.8733 38 1 6.3625 4.0403 -2.7064 39 1 0.2436 3.3700 0.5027 40 1 0.9792 3.8344 2.0556 41 1 1.9034 4.0114 0.5448 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589302105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:22 Heat of formation + Delta-G solvation = -137.031673 kcal Electronic energy + Delta-G solvation = -24212.192141 eV Core-core repulsion = 20603.564096 eV Total energy + Delta-G solvation = -3608.628046 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.72919 -39.45976 -38.27597 -36.92933 -35.86718 -35.62295 -34.20462 -31.90146 -31.59958 -29.40238 -27.34690 -27.12595 -24.23236 -23.67432 -22.81685 -22.19368 -20.56729 -19.63130 -18.56975 -17.87061 -17.72221 -17.45660 -16.80772 -16.58354 -16.27233 -16.07143 -15.35842 -15.13223 -15.03899 -14.69966 -14.50231 -14.30165 -14.16961 -13.72885 -13.40535 -13.31861 -13.20286 -13.10808 -13.02228 -12.99911 -12.77892 -12.65371 -12.36027 -12.22610 -12.19814 -11.94835 -11.57428 -11.53338 -11.38422 -11.18802 -10.72327 -10.27894 -9.84679 -9.51567 -8.67526 -6.47757 -0.51635 0.38832 0.82931 1.38218 1.44217 1.52378 2.11040 2.18846 2.57805 2.75049 2.87084 3.41783 3.50781 3.77118 3.93451 4.12139 4.30159 4.41271 4.43272 4.45279 4.50676 4.56205 4.62127 4.79648 4.83901 4.85133 4.87307 4.90077 5.04555 5.08293 5.17524 5.21681 5.25359 5.40717 5.46840 5.54610 5.87534 5.95472 6.01708 6.10276 6.28794 6.53009 6.81064 6.84674 8.29758 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.015604 B = 0.003827 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.984833 B = 7314.960076 C = 7868.014660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C 0.085 3.915 4 H 0.083 0.917 5 C 0.093 3.907 6 N -1.105 6.105 7 S 2.719 3.281 8 O -0.986 6.986 9 O -0.996 6.996 10 C -0.641 4.641 11 C -0.140 4.140 12 C -0.124 4.124 13 C -0.130 4.130 14 C 0.061 3.939 15 C -0.500 4.500 16 H 0.076 0.924 17 C 0.036 3.964 18 N -0.831 5.831 19 Si 0.984 3.016 20 H -0.261 1.261 21 H -0.263 1.263 22 H -0.264 1.264 23 C -0.139 4.139 24 O -0.394 6.394 25 C 0.019 3.981 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.421 0.579 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.115 0.885 37 H 0.290 0.710 38 H 0.110 0.890 39 H 0.058 0.942 40 H 0.095 0.905 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.562 -2.020 6.453 14.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C 0.026 3.974 4 H 0.101 0.899 5 C -0.033 4.033 6 N -0.868 5.868 7 S 2.812 3.188 8 O -0.976 6.976 9 O -0.986 6.986 10 C -0.730 4.730 11 C -0.161 4.161 12 C -0.143 4.143 13 C -0.150 4.150 14 C 0.058 3.942 15 C -0.530 4.530 16 H 0.094 0.906 17 C -0.178 4.178 18 N -0.457 5.457 19 Si 0.805 3.195 20 H -0.185 1.185 21 H -0.188 1.188 22 H -0.189 1.189 23 C -0.160 4.160 24 O -0.313 6.313 25 C -0.077 4.077 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.258 0.742 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.133 0.867 37 H 0.101 0.899 38 H 0.128 0.872 39 H 0.077 0.923 40 H 0.113 0.887 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -12.081 -1.941 7.199 14.197 hybrid contribution 0.289 0.385 -1.770 1.835 sum -11.792 -1.556 5.429 13.075 Atomic orbital electron populations 1.21690 0.94326 1.02425 1.01938 1.21714 0.97427 0.93680 1.03735 1.22449 0.91475 0.95910 0.87572 0.89891 1.22052 0.97110 0.81224 1.02951 1.55224 1.25585 1.16433 1.89513 1.00787 0.72656 0.72109 0.73276 1.93495 1.82130 1.77433 1.44524 1.93498 1.86079 1.32092 1.86974 1.30212 1.19459 1.07734 1.15626 1.20521 1.03062 0.93197 0.99294 1.21176 0.99908 0.99750 0.93505 1.21707 1.00280 0.96437 0.96597 1.18055 0.90010 0.93168 0.92961 1.19863 1.45789 0.95290 0.92048 0.90569 1.26680 0.91948 0.95339 1.03832 1.69782 1.35789 1.09378 1.30775 0.85115 0.78831 0.79285 0.76255 1.18511 1.18805 1.18904 1.20916 1.01885 0.99427 0.93795 1.87916 1.83848 1.29210 1.30292 1.23073 0.98004 0.83079 1.03590 0.91636 0.92675 0.92438 0.89379 0.90882 0.89884 0.89860 0.74243 0.84898 0.85325 0.86717 0.89927 0.87179 0.92300 0.88674 0.94117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.86 71.98 0.71 -1.42 16 2 C -0.13 -2.16 5.64 30.59 0.17 -1.98 16 3 C 0.09 1.71 2.27 30.60 0.07 1.78 16 4 H 0.08 1.44 7.67 -2.39 -0.02 1.42 16 5 C 0.09 2.30 5.89 86.38 0.51 2.80 16 6 N -1.10 -30.91 5.87 -187.49 -1.10 -32.01 16 7 S 2.72 100.02 5.74 -56.49 -0.32 99.70 16 8 O -0.99 -39.31 16.73 -128.00 -2.14 -41.45 16 9 O -1.00 -41.48 17.27 -128.00 -2.21 -43.69 16 10 C -0.64 -27.47 5.94 22.22 0.13 -27.34 16 11 C -0.14 -5.80 9.53 22.46 0.21 -5.59 16 12 C -0.12 -5.39 10.02 22.22 0.22 -5.17 16 13 C -0.13 -6.52 8.66 22.73 0.20 -6.33 16 14 C 0.06 3.22 5.55 -21.29 -0.12 3.10 16 15 C -0.50 -26.37 9.06 23.46 0.21 -26.16 16 16 H 0.08 3.93 7.87 -2.91 -0.02 3.91 16 17 C 0.04 1.75 5.26 85.26 0.45 2.20 16 18 N -0.83 -41.27 10.84 21.82 0.24 -41.03 16 19 Si 0.98 37.10 29.57 68.60 2.03 39.13 16 20 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 21 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 22 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 23 C -0.14 -6.76 9.26 22.73 0.21 -6.55 16 24 O -0.39 -8.62 9.79 -148.98 -1.46 -10.08 16 25 C 0.02 0.32 10.67 113.37 1.21 1.53 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.86 7.73 -2.39 -0.02 0.84 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 29 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.08 2.16 7.75 -2.39 -0.02 2.14 16 33 H 0.42 9.87 6.73 -96.74 -0.65 9.21 16 34 H 0.13 4.78 7.59 -2.91 -0.02 4.76 16 35 H 0.13 4.70 8.06 -2.91 -0.02 4.67 16 36 H 0.11 5.92 6.23 -2.91 -0.02 5.91 16 37 H 0.29 12.94 8.30 -92.70 -0.77 12.17 16 38 H 0.11 5.22 7.60 -2.91 -0.02 5.19 16 39 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.04 0.68 6.20 -2.39 -0.01 0.66 16 Total: -1.00 -65.71 353.46 -0.39 -66.11 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: 0.39 Total: 32.45 kcal Atomic # 6 Polarization: -73.31 SS G_CDS: 4.19 Total: -69.12 kcal Atomic # 7 Polarization: -72.18 SS G_CDS: -0.86 Total: -73.04 kcal Atomic # 8 Polarization: -89.41 SS G_CDS: -5.81 Total: -95.22 kcal Atomic # 14 Polarization: 37.10 SS G_CDS: 2.03 Total: 39.13 kcal Atomic # 16 Polarization: 100.02 SS G_CDS: -0.32 Total: 99.70 kcal Total: -65.71 -0.39 -66.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589302105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.926 kcal (2) G-P(sol) polarization free energy of solvation -65.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds