Wall clock time and date at job start Tue Mar 31 2020 10:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46857 * 2 1 4 4 H 1.08994 * 109.46886 * 55.87871 * 3 2 1 5 5 C 1.53000 * 109.46807 * 175.87537 * 3 2 1 6 6 N 1.46507 * 109.46992 * 185.49154 * 5 3 2 7 7 S 1.65604 * 119.99940 * 164.93345 * 6 5 3 8 8 O 1.42092 * 106.39864 * 178.54358 * 7 6 5 9 9 O 1.42106 * 106.39794 * 311.46067 * 7 6 5 10 10 C 1.76196 * 107.21714 * 65.00186 * 7 6 5 11 11 C 1.38654 * 119.87477 * 269.72706 * 10 7 6 12 12 C 1.38621 * 120.50176 * 179.72632 * 11 10 7 13 13 C 1.37635 * 120.24373 * 0.54525 * 12 11 10 14 14 C 1.40700 * 119.74519 * 359.73307 * 13 12 11 15 15 C 1.41400 * 120.23913 * 180.02562 * 14 13 12 16 16 H 1.08009 * 119.99762 * 151.52493 * 15 14 13 17 17 C 1.39941 * 120.00398 * 331.51568 * 15 14 13 18 18 N 1.30822 * 119.99989 * 159.21446 * 17 15 14 19 19 Si 1.86798 * 120.00004 * 339.22216 * 17 15 14 20 20 H 1.48503 * 109.47380 * 94.57409 * 19 17 15 21 21 H 1.48502 * 109.47183 * 214.57067 * 19 17 15 22 22 H 1.48498 * 109.46969 * 334.57068 * 19 17 15 23 23 C 1.37596 * 119.87848 * 90.00083 * 10 7 6 24 24 O 1.42901 * 109.47178 * 295.87516 * 3 2 1 25 25 C 1.42905 * 113.99792 * 107.58134 * 24 3 2 26 26 H 1.09001 * 109.46708 * 180.91646 * 1 2 3 27 27 H 1.09001 * 109.46850 * 60.92504 * 1 2 3 28 28 H 1.09000 * 109.47335 * 300.91853 * 1 2 3 29 29 H 1.08997 * 109.46855 * 120.00010 * 2 1 3 30 30 H 1.09003 * 109.47220 * 239.99918 * 2 1 3 31 31 H 1.08990 * 109.47293 * 305.49354 * 5 3 2 32 32 H 1.09003 * 109.47036 * 65.49717 * 5 3 2 33 33 H 0.97005 * 119.99620 * 344.93531 * 6 5 3 34 34 H 1.07999 * 119.75157 * 0.02562 * 11 10 7 35 35 H 1.07999 * 119.87794 * 180.25448 * 12 11 10 36 36 H 1.08004 * 120.12801 * 179.70311 * 13 12 11 37 37 H 0.97004 * 120.00117 * 180.02562 * 18 17 15 38 38 H 1.08004 * 120.12318 * 359.97340 * 23 10 7 39 39 H 1.09005 * 109.46630 * 182.60248 * 25 24 3 40 40 H 1.09005 * 109.46937 * 302.59910 * 25 24 3 41 41 H 1.09000 * 109.46811 * 62.60276 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6176 1.9772 0.8507 5 6 3.5665 1.4438 0.1038 6 7 4.0458 2.8219 0.2358 7 16 5.5969 3.1146 0.7368 8 8 5.7613 4.5260 0.7290 9 8 5.8027 2.3145 1.8931 10 6 6.6744 2.4812 -0.5049 11 6 7.1212 1.1708 -0.4287 12 6 7.9648 0.6573 -1.4016 13 6 8.3771 1.4486 -2.4495 14 6 7.9346 2.7816 -2.5339 15 6 8.3513 3.6036 -3.6063 16 1 7.7170 4.4083 -3.9479 17 6 9.5856 3.3748 -4.2249 18 7 9.8066 3.8288 -5.4317 19 14 10.9174 2.4208 -3.3275 20 1 10.8477 0.9890 -3.7156 21 1 12.2490 2.9680 -3.6916 22 1 10.7144 2.5468 -1.8618 23 6 7.0739 3.2903 -1.5436 24 8 1.6444 2.0876 -1.2122 25 6 0.6058 3.0546 -1.0438 26 1 -0.3633 -1.0276 0.0164 27 1 -0.3633 0.4994 -0.8982 28 1 -0.3634 0.5280 0.8816 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 3.8717 0.8677 0.9771 32 1 3.9920 0.9955 -0.7941 33 1 3.4546 3.5628 0.0297 34 1 6.8058 0.5439 0.3922 35 1 8.3034 -0.3660 -1.3344 36 1 9.0382 1.0481 -3.2038 37 1 10.6620 3.6699 -5.8606 38 1 6.7279 4.3119 -1.5989 39 1 0.3308 3.4653 -2.0154 40 1 -0.2641 2.5784 -0.5913 41 1 0.9584 3.8575 -0.3965 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589302106.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:25 Heat of formation + Delta-G solvation = -114.584497 kcal Electronic energy + Delta-G solvation = -24225.546312 eV Core-core repulsion = 20617.891649 eV Total energy + Delta-G solvation = -3607.654663 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.91103 -37.89761 -36.76367 -35.40427 -34.92843 -33.79098 -33.27896 -30.71622 -30.14509 -28.74817 -26.28991 -25.38641 -23.37223 -22.38546 -21.41497 -20.89129 -19.18505 -18.04425 -17.21830 -17.08185 -16.33371 -16.19546 -15.56336 -15.31201 -14.98450 -14.75897 -14.33166 -14.02556 -13.78369 -13.57548 -13.19298 -13.15249 -12.87039 -12.47783 -12.30824 -12.19516 -11.87027 -11.71316 -11.65225 -11.63274 -11.47483 -11.45716 -11.22041 -11.05748 -10.89757 -10.77047 -10.36325 -10.03052 -9.76912 -9.67892 -9.40795 -9.14724 -8.27372 -7.87912 -7.10480 -4.63123 0.91147 1.92679 2.42764 2.99567 3.11461 3.20781 3.42934 3.58878 3.85385 4.10284 4.31885 4.51859 4.71698 4.81064 4.93306 5.05613 5.11739 5.16566 5.20832 5.28253 5.45464 5.49068 5.56284 5.71903 5.74520 5.82292 5.86341 5.98485 6.02131 6.07140 6.22740 6.47277 6.59045 6.86770 7.04137 7.05150 7.15386 7.21053 7.40771 7.63021 7.78753 8.18315 8.43842 8.61606 9.91209 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.017491 B = 0.003880 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.428126 B = 7215.561628 C = 7542.811684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.140 4.140 3 C 0.082 3.918 4 H 0.070 0.930 5 C 0.114 3.886 6 N -1.117 6.117 7 S 2.691 3.309 8 O -0.969 6.969 9 O -0.973 6.973 10 C -0.623 4.623 11 C -0.161 4.161 12 C -0.091 4.091 13 C -0.201 4.201 14 C 0.074 3.926 15 C -0.443 4.443 16 H 0.095 0.905 17 C 0.085 3.915 18 N -0.797 5.797 19 Si 0.907 3.093 20 H -0.267 1.267 21 H -0.286 1.286 22 H -0.244 1.244 23 C -0.102 4.102 24 O -0.375 6.375 25 C 0.026 3.974 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.414 0.586 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.288 0.712 38 H 0.119 0.881 39 H 0.086 0.914 40 H 0.042 0.958 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.667 -5.835 8.061 17.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.179 4.179 3 C 0.023 3.977 4 H 0.088 0.912 5 C -0.013 4.013 6 N -0.876 5.876 7 S 2.786 3.214 8 O -0.960 6.960 9 O -0.963 6.963 10 C -0.715 4.715 11 C -0.182 4.182 12 C -0.110 4.110 13 C -0.220 4.220 14 C 0.070 3.930 15 C -0.471 4.471 16 H 0.113 0.887 17 C -0.135 4.135 18 N -0.420 5.420 19 Si 0.732 3.268 20 H -0.193 1.193 21 H -0.213 1.213 22 H -0.167 1.167 23 C -0.123 4.123 24 O -0.293 6.293 25 C -0.070 4.070 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.247 0.753 34 H 0.129 0.871 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.098 0.902 38 H 0.137 0.863 39 H 0.104 0.896 40 H 0.060 0.940 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -14.100 -5.518 8.471 17.350 hybrid contribution 0.513 -0.332 -0.496 0.787 sum -13.587 -5.850 7.975 16.805 Atomic orbital electron populations 1.21777 0.95498 1.01897 1.01768 1.21919 0.96553 0.95945 1.03468 1.22401 0.93691 0.93847 0.87759 0.91153 1.21542 0.94001 0.82644 1.03075 1.55462 1.31462 1.13415 1.87222 1.01657 0.72388 0.73146 0.74256 1.93552 1.85228 1.29782 1.87395 1.93516 1.85049 1.71213 1.46507 1.29910 1.19127 1.04895 1.17536 1.20047 1.04060 0.93623 1.00504 1.20696 0.97534 0.98152 0.94628 1.21314 1.05782 0.94584 1.00344 1.17775 0.91896 0.91773 0.91581 1.19524 1.02995 1.14110 1.10455 0.88673 1.26167 1.00128 0.93615 0.93631 1.69700 1.25043 1.36090 1.11136 0.86386 0.78467 0.79265 0.82653 1.19340 1.21290 1.16739 1.20833 1.01202 0.97559 0.92683 1.87996 1.55201 1.55400 1.30733 1.22915 0.90183 0.91338 1.02607 0.92465 0.92208 0.93037 0.90500 0.90436 0.89197 0.90270 0.75275 0.87096 0.87932 0.87570 0.90158 0.86308 0.89573 0.93954 0.94016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.10 37.16 0.34 -0.78 16 2 C -0.14 -1.20 5.65 -26.73 -0.15 -1.35 16 3 C 0.08 0.83 2.34 -26.73 -0.06 0.77 16 4 H 0.07 0.62 7.64 -51.93 -0.40 0.22 16 5 C 0.11 1.39 5.89 -4.04 -0.02 1.37 16 6 N -1.12 -15.50 5.97 -10.61 -0.06 -15.56 16 7 S 2.69 48.17 5.74 -107.50 -0.62 47.55 16 8 O -0.97 -19.75 17.26 -57.17 -0.99 -20.74 16 9 O -0.97 -18.70 16.73 -57.17 -0.96 -19.66 16 10 C -0.62 -12.99 5.94 -39.66 -0.24 -13.23 16 11 C -0.16 -3.27 9.53 -39.29 -0.37 -3.65 16 12 C -0.09 -1.90 10.02 -39.66 -0.40 -2.30 16 13 C -0.20 -4.70 7.30 -38.87 -0.28 -4.98 16 14 C 0.07 1.85 5.12 -106.83 -0.55 1.30 16 15 C -0.44 -11.74 9.56 -37.74 -0.36 -12.10 16 16 H 0.10 2.61 8.06 -52.48 -0.42 2.19 16 17 C 0.09 2.17 5.37 -17.34 -0.09 2.08 16 18 N -0.80 -20.63 13.93 55.55 0.77 -19.86 16 19 Si 0.91 20.23 24.58 -169.99 -4.18 16.05 16 20 H -0.27 -5.71 6.63 56.52 0.37 -5.33 16 21 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.24 -5.65 7.00 56.52 0.40 -5.25 16 23 C -0.10 -2.37 9.26 -38.88 -0.36 -2.73 16 24 O -0.37 -4.28 9.78 -35.23 -0.34 -4.62 16 25 C 0.03 0.22 10.36 101.05 1.05 1.27 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.47 6.84 -51.93 -0.36 0.11 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.09 1.01 7.75 -51.93 -0.40 0.61 16 32 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.41 5.03 8.53 -34.48 -0.29 4.74 16 34 H 0.11 1.98 7.59 -52.49 -0.40 1.58 16 35 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 36 H 0.11 2.44 4.71 -52.48 -0.25 2.20 16 37 H 0.29 6.72 8.30 -40.82 -0.34 6.38 16 38 H 0.12 2.67 7.60 -52.48 -0.40 2.27 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.04 0.29 6.72 -51.93 -0.35 -0.06 16 41 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 348.96 15.07 5.26 5.26 Total: -1.00 -31.11 348.96 -8.43 -39.55 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.81 Total: 6.35 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: -1.50 Total: -34.32 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.71 Total: -35.42 kcal Atomic # 8 Polarization: -42.73 SS G_CDS: -2.29 Total: -45.02 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.18 Total: 16.05 kcal Atomic # 16 Polarization: 48.17 SS G_CDS: -0.62 Total: 47.55 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.11 -8.43 -39.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589302106.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.037 kcal (2) G-P(sol) polarization free energy of solvation -31.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds