Wall clock time and date at job start Tue Mar 31 2020 10:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46857 * 2 1 4 4 H 1.08994 * 109.46886 * 55.87871 * 3 2 1 5 5 C 1.53000 * 109.46807 * 175.87537 * 3 2 1 6 6 N 1.46507 * 109.46992 * 185.49154 * 5 3 2 7 7 S 1.65604 * 119.99940 * 164.93345 * 6 5 3 8 8 O 1.42092 * 106.39864 * 178.54358 * 7 6 5 9 9 O 1.42106 * 106.39794 * 311.46067 * 7 6 5 10 10 C 1.76196 * 107.21714 * 65.00186 * 7 6 5 11 11 C 1.38654 * 119.87477 * 269.72706 * 10 7 6 12 12 C 1.38621 * 120.50176 * 179.72632 * 11 10 7 13 13 C 1.37635 * 120.24373 * 0.54525 * 12 11 10 14 14 C 1.40700 * 119.74519 * 359.73307 * 13 12 11 15 15 C 1.41400 * 120.23913 * 180.02562 * 14 13 12 16 16 H 1.08009 * 119.99762 * 151.52493 * 15 14 13 17 17 C 1.39941 * 120.00398 * 331.51568 * 15 14 13 18 18 N 1.30822 * 119.99989 * 159.21446 * 17 15 14 19 19 Si 1.86798 * 120.00004 * 339.22216 * 17 15 14 20 20 H 1.48503 * 109.47380 * 94.57409 * 19 17 15 21 21 H 1.48502 * 109.47183 * 214.57067 * 19 17 15 22 22 H 1.48498 * 109.46969 * 334.57068 * 19 17 15 23 23 C 1.37596 * 119.87848 * 90.00083 * 10 7 6 24 24 O 1.42901 * 109.47178 * 295.87516 * 3 2 1 25 25 C 1.42905 * 113.99792 * 107.58134 * 24 3 2 26 26 H 1.09001 * 109.46708 * 180.91646 * 1 2 3 27 27 H 1.09001 * 109.46850 * 60.92504 * 1 2 3 28 28 H 1.09000 * 109.47335 * 300.91853 * 1 2 3 29 29 H 1.08997 * 109.46855 * 120.00010 * 2 1 3 30 30 H 1.09003 * 109.47220 * 239.99918 * 2 1 3 31 31 H 1.08990 * 109.47293 * 305.49354 * 5 3 2 32 32 H 1.09003 * 109.47036 * 65.49717 * 5 3 2 33 33 H 0.97005 * 119.99620 * 344.93531 * 6 5 3 34 34 H 1.07999 * 119.75157 * 0.02562 * 11 10 7 35 35 H 1.07999 * 119.87794 * 180.25448 * 12 11 10 36 36 H 1.08004 * 120.12801 * 179.70311 * 13 12 11 37 37 H 0.97004 * 120.00117 * 180.02562 * 18 17 15 38 38 H 1.08004 * 120.12318 * 359.97340 * 23 10 7 39 39 H 1.09005 * 109.46630 * 182.60248 * 25 24 3 40 40 H 1.09005 * 109.46937 * 302.59910 * 25 24 3 41 41 H 1.09000 * 109.46811 * 62.60276 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6176 1.9772 0.8507 5 6 3.5665 1.4438 0.1038 6 7 4.0458 2.8219 0.2358 7 16 5.5969 3.1146 0.7368 8 8 5.7613 4.5260 0.7290 9 8 5.8027 2.3145 1.8931 10 6 6.6744 2.4812 -0.5049 11 6 7.1212 1.1708 -0.4287 12 6 7.9648 0.6573 -1.4016 13 6 8.3771 1.4486 -2.4495 14 6 7.9346 2.7816 -2.5339 15 6 8.3513 3.6036 -3.6063 16 1 7.7170 4.4083 -3.9479 17 6 9.5856 3.3748 -4.2249 18 7 9.8066 3.8288 -5.4317 19 14 10.9174 2.4208 -3.3275 20 1 10.8477 0.9890 -3.7156 21 1 12.2490 2.9680 -3.6916 22 1 10.7144 2.5468 -1.8618 23 6 7.0739 3.2903 -1.5436 24 8 1.6444 2.0876 -1.2122 25 6 0.6058 3.0546 -1.0438 26 1 -0.3633 -1.0276 0.0164 27 1 -0.3633 0.4994 -0.8982 28 1 -0.3634 0.5280 0.8816 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 3.8717 0.8677 0.9771 32 1 3.9920 0.9955 -0.7941 33 1 3.4546 3.5628 0.0297 34 1 6.8058 0.5439 0.3922 35 1 8.3034 -0.3660 -1.3344 36 1 9.0382 1.0481 -3.2038 37 1 10.6620 3.6699 -5.8606 38 1 6.7279 4.3119 -1.5989 39 1 0.3308 3.4653 -2.0154 40 1 -0.2641 2.5784 -0.5913 41 1 0.9584 3.8575 -0.3965 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589302106.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:24 Heat of formation + Delta-G solvation = -137.493305 kcal Electronic energy + Delta-G solvation = -24226.539712 eV Core-core repulsion = 20617.891649 eV Total energy + Delta-G solvation = -3608.648063 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.72416 -39.65139 -38.29946 -36.94771 -35.96199 -35.65290 -34.00971 -32.54069 -31.88041 -29.55104 -27.26100 -27.01992 -24.19679 -24.08092 -22.68980 -22.16096 -20.66268 -19.68481 -18.56379 -18.08001 -17.85878 -17.48014 -16.98380 -16.65592 -16.32489 -16.16352 -15.62517 -15.19894 -14.84669 -14.70332 -14.68096 -14.41710 -14.04918 -13.92228 -13.59599 -13.42948 -13.35034 -13.20534 -13.11948 -13.08355 -12.91313 -12.53319 -12.42871 -12.21436 -12.04799 -11.97066 -11.81229 -11.58230 -11.53063 -11.07627 -10.50366 -10.39343 -10.00771 -9.69797 -8.99571 -6.59870 -0.55191 0.18643 0.65097 1.20086 1.35346 1.42390 2.01658 2.07631 2.40218 2.73462 2.86052 3.29966 3.41146 3.79613 3.96246 4.11818 4.18205 4.33949 4.38224 4.45398 4.47873 4.51519 4.58499 4.66077 4.76037 4.78214 4.86350 4.87194 4.89940 5.06120 5.07926 5.16425 5.27685 5.33982 5.43767 5.45084 5.63314 5.75690 5.99054 6.03749 6.23361 6.32611 6.58212 6.68372 8.08686 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.017491 B = 0.003880 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.428126 B = 7215.561628 C = 7542.811684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.083 3.917 4 H 0.087 0.913 5 C 0.103 3.897 6 N -1.103 6.103 7 S 2.720 3.280 8 O -0.996 6.996 9 O -0.977 6.977 10 C -0.633 4.633 11 C -0.144 4.144 12 C -0.094 4.094 13 C -0.208 4.208 14 C 0.055 3.945 15 C -0.486 4.486 16 H 0.060 0.940 17 C 0.051 3.949 18 N -0.837 5.837 19 Si 0.957 3.043 20 H -0.246 1.246 21 H -0.272 1.272 22 H -0.258 1.258 23 C -0.126 4.126 24 O -0.400 6.400 25 C 0.019 3.981 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.423 0.577 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.109 0.891 37 H 0.297 0.703 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.595 -8.356 10.440 20.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C 0.024 3.976 4 H 0.105 0.895 5 C -0.023 4.023 6 N -0.865 5.865 7 S 2.812 3.188 8 O -0.986 6.986 9 O -0.967 6.967 10 C -0.721 4.721 11 C -0.165 4.165 12 C -0.113 4.113 13 C -0.228 4.228 14 C 0.051 3.949 15 C -0.515 4.515 16 H 0.078 0.922 17 C -0.165 4.165 18 N -0.463 5.463 19 Si 0.779 3.221 20 H -0.171 1.171 21 H -0.198 1.198 22 H -0.182 1.182 23 C -0.147 4.147 24 O -0.320 6.320 25 C -0.077 4.077 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.086 0.914 31 H 0.124 0.876 32 H 0.088 0.912 33 H 0.259 0.741 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.127 0.873 37 H 0.108 0.892 38 H 0.129 0.871 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -15.017 -8.047 10.820 20.182 hybrid contribution 0.574 0.378 -1.069 1.271 sum -14.443 -7.669 9.750 19.039 Atomic orbital electron populations 1.21760 0.94589 1.02519 1.01873 1.21932 0.97336 0.94777 1.03744 1.22472 0.92102 0.95067 0.87983 0.89507 1.21850 0.95759 0.81314 1.03385 1.55146 1.29663 1.14893 1.86800 1.00834 0.72620 0.72038 0.73337 1.93516 1.86005 1.31528 1.87542 1.93507 1.85652 1.71271 1.46295 1.30449 1.19349 1.05102 1.17198 1.20636 1.01796 0.93440 1.00579 1.21183 0.96799 0.99839 0.93476 1.21518 1.05796 0.94119 1.01339 1.17937 0.92725 0.92594 0.91618 1.19492 1.04177 1.14935 1.12871 0.92178 1.26807 1.01257 0.94444 0.94016 1.69719 1.26156 1.38168 1.12212 0.85630 0.76622 0.79346 0.80486 1.17119 1.19790 1.18182 1.20866 1.02111 0.97988 0.93702 1.87964 1.56155 1.56137 1.31724 1.23081 0.90207 0.91223 1.03201 0.91664 0.92978 0.92014 0.88973 0.91430 0.87586 0.91239 0.74110 0.83604 0.83745 0.87303 0.89230 0.87072 0.89360 0.92276 0.93344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.10 71.98 0.65 -1.16 16 2 C -0.14 -2.00 5.65 30.60 0.17 -1.83 16 3 C 0.08 1.46 2.34 30.59 0.07 1.54 16 4 H 0.09 1.24 7.64 -2.39 -0.02 1.22 16 5 C 0.10 2.24 5.89 86.38 0.51 2.75 16 6 N -1.10 -28.34 5.97 -187.48 -1.12 -29.46 16 7 S 2.72 92.44 5.74 -56.49 -0.32 92.12 16 8 O -1.00 -39.96 17.26 -128.00 -2.21 -42.17 16 9 O -0.98 -34.48 16.73 -128.00 -2.14 -36.62 16 10 C -0.63 -25.50 5.94 22.22 0.13 -25.37 16 11 C -0.14 -5.36 9.53 22.46 0.21 -5.15 16 12 C -0.09 -3.63 10.02 22.22 0.22 -3.41 16 13 C -0.21 -9.53 7.30 22.73 0.17 -9.37 16 14 C 0.05 2.80 5.12 -21.29 -0.11 2.69 16 15 C -0.49 -27.29 9.56 23.46 0.22 -27.07 16 16 H 0.06 3.63 8.06 -2.91 -0.02 3.60 16 17 C 0.05 2.70 5.37 85.26 0.46 3.16 16 18 N -0.84 -45.19 13.93 21.83 0.30 -44.89 16 19 Si 0.96 41.61 24.58 68.60 1.69 43.30 16 20 H -0.25 -9.79 6.63 99.48 0.66 -9.13 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 22 H -0.26 -11.66 7.00 99.48 0.70 -10.96 16 23 C -0.13 -5.98 9.26 22.73 0.21 -5.77 16 24 O -0.40 -8.50 9.78 -148.98 -1.46 -9.96 16 25 C 0.02 0.29 10.36 113.37 1.17 1.46 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.05 0.71 6.84 -2.39 -0.02 0.69 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.11 1.98 7.75 -2.39 -0.02 1.96 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.42 9.56 8.53 -96.73 -0.82 8.73 16 34 H 0.15 4.44 7.59 -2.91 -0.02 4.42 16 35 H 0.14 4.36 8.06 -2.91 -0.02 4.33 16 36 H 0.11 4.87 4.71 -2.91 -0.01 4.85 16 37 H 0.30 14.28 8.30 -92.71 -0.77 13.51 16 38 H 0.11 5.28 7.60 -2.91 -0.02 5.26 16 39 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.06 0.68 6.72 -2.38 -0.02 0.67 16 41 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -68.51 348.96 -1.00 -69.51 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.16 Total: 25.69 kcal Atomic # 6 Polarization: -71.62 SS G_CDS: 4.10 Total: -67.52 kcal Atomic # 7 Polarization: -73.54 SS G_CDS: -0.81 Total: -74.35 kcal Atomic # 8 Polarization: -82.94 SS G_CDS: -5.81 Total: -88.75 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 1.69 Total: 43.30 kcal Atomic # 16 Polarization: 92.44 SS G_CDS: -0.32 Total: 92.12 kcal Total: -68.51 -1.00 -69.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589302106.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.981 kcal (2) G-P(sol) polarization free energy of solvation -68.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds