Wall clock time and date at job start Tue Mar 31 2020 10:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47215 * 119.99669 * 2 1 3 5 5 C 1.50706 * 109.47291 * 239.99891 * 2 1 3 6 6 N 1.30913 * 123.03041 * 242.64707 * 5 2 1 7 7 C 1.29399 * 117.46415 * 179.79433 * 6 5 2 8 8 S 1.70924 * 110.58581 * 0.45696 * 7 6 5 9 9 C 1.36749 * 123.03465 * 62.94055 * 5 2 1 10 10 C 1.46509 * 126.17879 * 359.97393 * 9 5 2 11 11 O 1.21611 * 119.99958 * 352.38445 * 10 9 5 12 12 O 1.34874 * 119.99955 * 172.37808 * 10 9 5 13 13 C 1.45201 * 116.99719 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46757 * 180.02562 * 13 12 10 15 15 O 1.42899 * 109.47418 * 65.00046 * 14 13 12 16 16 C 1.42905 * 113.99980 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.46723 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00370 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99510 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00022 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 120.00149 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47133 * 89.99999 * 21 19 17 23 23 H 1.48498 * 109.47079 * 209.99945 * 21 19 17 24 24 H 1.48498 * 109.46939 * 329.99567 * 21 19 17 25 25 H 1.09000 * 109.47245 * 56.12565 * 1 2 3 26 26 H 1.08996 * 109.47513 * 296.11858 * 1 2 3 27 27 H 1.09007 * 109.47158 * 176.12137 * 1 2 3 28 28 H 1.08997 * 109.47504 * 64.00432 * 3 2 1 29 29 H 1.08998 * 109.47049 * 184.00824 * 3 2 1 30 30 H 1.08997 * 109.46706 * 304.00583 * 3 2 1 31 31 H 1.09003 * 109.46519 * 60.00161 * 4 2 1 32 32 H 1.09003 * 109.46992 * 179.97438 * 4 2 1 33 33 H 1.08992 * 109.47118 * 300.00211 * 4 2 1 34 34 H 1.07992 * 124.70532 * 180.21466 * 7 6 5 35 35 H 1.09003 * 109.47294 * 299.99680 * 13 12 10 36 36 H 1.08998 * 109.47187 * 60.00288 * 13 12 10 37 37 H 1.09011 * 109.46780 * 185.00029 * 14 13 12 38 38 H 1.08998 * 109.46994 * 304.99429 * 14 13 12 39 39 H 1.08995 * 109.46936 * 300.00090 * 16 15 14 40 40 H 1.09002 * 109.46791 * 60.00020 * 16 15 14 41 41 H 0.96999 * 119.99886 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0324 -0.7105 -1.2305 6 7 2.7457 -1.8070 -1.1801 7 6 3.1172 -2.3295 -2.3041 8 16 2.5566 -1.3905 -3.6177 9 6 1.7892 -0.2647 -2.5002 10 6 1.0280 0.9326 -2.8655 11 8 0.4282 1.5561 -2.0108 12 8 0.9925 1.3435 -4.1497 13 6 0.2190 2.5379 -4.4384 14 6 0.2958 2.8456 -5.9352 15 8 -0.3390 1.7973 -6.6702 16 6 -0.3232 1.9883 -8.0864 17 6 -1.0149 0.8296 -8.7572 18 1 -1.4259 0.0279 -8.1617 19 6 -1.1231 0.7932 -10.1312 20 7 -1.7263 -0.2182 -10.7168 21 14 -0.4116 2.1797 -11.1613 22 1 0.9963 1.8635 -11.5121 23 1 -1.2092 2.3323 -12.4045 24 1 -0.4564 3.4455 -10.3860 25 1 -0.3634 0.5728 -0.8532 26 1 -0.3634 0.4524 0.9227 27 1 -0.3634 -1.0254 -0.0695 28 1 1.7365 1.9352 0.9236 29 1 3.1276 1.4433 -0.0718 30 1 1.6192 1.9766 -0.8519 31 1 1.6767 -1.7489 1.2493 32 1 3.1300 -0.7216 1.2490 33 1 1.6767 -0.2074 2.1392 34 1 3.7037 -3.2313 -2.3989 35 1 -0.8206 2.3751 -4.1542 36 1 0.6230 3.3778 -3.8733 37 1 -0.2100 3.7897 -6.1385 38 1 1.3403 2.9205 -6.2377 39 1 -0.8419 2.9144 -8.3339 40 1 0.7084 2.0457 -8.4337 41 1 -1.8028 -0.2436 -11.6834 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815215744.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:57 Heat of formation + Delta-G solvation = -72.568518 kcal Electronic energy + Delta-G solvation = -23835.866477 eV Core-core repulsion = 20230.033763 eV Total energy + Delta-G solvation = -3605.832713 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.12120 -39.78119 -37.38855 -36.56796 -35.67097 -32.74125 -31.14559 -30.00498 -27.66423 -27.45631 -27.27398 -26.12695 -23.37676 -22.02063 -21.83837 -21.48872 -19.33177 -18.00105 -17.26529 -16.95842 -16.84014 -16.65422 -15.58849 -15.20513 -15.03271 -14.84523 -14.73633 -14.50907 -13.97549 -13.88030 -13.32101 -13.13913 -12.69576 -12.50019 -12.33992 -12.18018 -12.12657 -11.86459 -11.51419 -11.31028 -11.08870 -11.04418 -11.01668 -10.86760 -10.68887 -10.31064 -9.97764 -9.92975 -9.91119 -9.72554 -9.25020 -9.06723 -8.95934 -8.55273 -6.15630 -4.15233 -0.07316 1.01040 1.43485 2.08290 2.56703 2.74137 3.21157 3.28362 3.28832 3.81327 4.31044 4.40057 4.49685 4.66448 4.81075 4.93506 5.03435 5.11013 5.15397 5.16043 5.30152 5.55124 5.61861 5.64380 5.68137 5.72238 5.77333 5.83341 5.84767 5.98654 6.00647 6.10472 6.22398 6.40866 6.50690 6.73230 6.92031 7.35037 7.53080 7.68533 7.90452 8.58895 8.95584 9.42913 10.97330 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.021578 B = 0.003062 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.286331 B = 9141.457849 C = 9879.221305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.008 3.992 3 C -0.162 4.162 4 C -0.128 4.128 5 C 0.167 3.833 6 N -0.473 5.473 7 C 0.018 3.982 8 S 0.240 5.760 9 C -0.293 4.293 10 C 0.539 3.461 11 O -0.479 6.479 12 O -0.335 6.335 13 C 0.076 3.924 14 C 0.057 3.943 15 O -0.376 6.376 16 C 0.169 3.831 17 C -0.520 4.520 18 H 0.083 0.917 19 C 0.073 3.927 20 N -0.894 5.894 21 Si 0.876 3.124 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.266 1.266 25 H 0.103 0.897 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.207 0.793 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.004 0.996 40 H 0.001 0.999 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.811 1.183 20.315 23.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.005 3.995 3 C -0.219 4.219 4 C -0.186 4.186 5 C 0.026 3.974 6 N -0.187 5.187 7 C -0.275 4.275 8 S 0.498 5.502 9 C -0.416 4.416 10 C 0.385 3.615 11 O -0.371 6.371 12 O -0.251 6.251 13 C 0.003 3.997 14 C -0.021 4.021 15 O -0.295 6.295 16 C 0.094 3.906 17 C -0.558 4.558 18 H 0.101 0.899 19 C -0.129 4.129 20 N -0.532 5.532 21 Si 0.703 3.297 22 H -0.199 1.199 23 H -0.207 1.207 24 H -0.191 1.191 25 H 0.121 0.879 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.223 0.777 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.022 0.978 40 H 0.018 0.982 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.802 0.703 19.724 22.500 hybrid contribution 0.226 1.151 -0.091 1.176 sum 11.029 1.854 19.633 22.595 Atomic orbital electron populations 1.22354 0.92561 1.02174 1.04852 1.19210 0.96493 0.94488 0.89282 1.22334 1.00091 0.94790 1.04678 1.21737 1.01165 1.00218 0.95466 1.21019 0.92589 0.90221 0.93568 1.66110 1.13562 1.10327 1.28679 1.28912 1.02529 1.04636 0.91429 1.84613 1.41865 1.14589 1.09143 1.24736 1.15400 1.04211 0.97239 1.19279 0.78280 0.82732 0.81208 1.90561 1.42137 1.55457 1.48971 1.86690 1.66596 1.44923 1.26909 1.23262 0.96167 0.84185 0.96104 1.22412 0.98060 0.92321 0.89316 1.87981 1.77790 1.43327 1.20374 1.20639 0.95461 0.97648 0.76894 1.20869 1.36893 1.06320 0.91737 0.89915 1.24767 0.94921 0.95905 0.97332 1.69872 1.42790 1.30346 1.10226 0.86852 0.79632 0.82977 0.80285 1.19872 1.20743 1.19110 0.87926 0.92187 0.93566 0.92030 0.93624 0.88569 0.92247 0.92492 0.92611 0.77683 0.89952 0.89939 0.91577 0.92995 0.97811 0.98169 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 8.19 37.16 0.30 -1.61 16 2 C 0.01 0.09 0.75 -155.66 -0.12 -0.02 16 3 C -0.16 -1.80 8.11 37.16 0.30 -1.50 16 4 C -0.13 -1.29 7.81 37.16 0.29 -1.00 16 5 C 0.17 2.11 5.48 -83.52 -0.46 1.65 16 6 N -0.47 -5.56 9.53 -11.30 -0.11 -5.66 16 7 C 0.02 0.17 12.21 51.74 0.63 0.80 16 8 S 0.24 2.69 23.10 -107.50 -2.48 0.21 16 9 C -0.29 -3.92 6.27 -36.79 -0.23 -4.16 16 10 C 0.54 7.87 7.36 34.06 0.25 8.12 16 11 O -0.48 -6.91 9.11 -19.35 -0.18 -7.08 16 12 O -0.34 -5.32 10.10 -43.75 -0.44 -5.76 16 13 C 0.08 1.09 5.86 37.16 0.22 1.31 16 14 C 0.06 0.93 6.33 37.16 0.24 1.16 16 15 O -0.38 -8.52 10.30 -38.80 -0.40 -8.92 16 16 C 0.17 4.18 4.76 36.01 0.17 4.35 16 17 C -0.52 -15.27 9.99 -34.44 -0.34 -15.62 16 18 H 0.08 2.67 8.06 -52.49 -0.42 2.25 16 19 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 20 N -0.89 -27.27 13.96 55.43 0.77 -26.50 16 21 Si 0.88 20.96 27.47 -169.99 -4.67 16.29 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 25 H 0.10 1.39 4.32 -49.64 -0.21 1.18 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.10 1.21 4.14 -49.61 -0.21 1.01 16 31 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.21 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.00 0.10 7.20 -51.93 -0.37 -0.27 16 40 H 0.00 0.01 7.57 -51.93 -0.39 -0.38 16 41 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 350.05 15.07 5.28 5.28 Total: -1.00 -32.84 350.05 -6.92 -39.76 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -5.85 Total: -3.11 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: 1.16 Total: -4.50 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: 0.67 Total: -32.16 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -1.02 Total: -21.76 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -2.48 Total: 0.21 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.84 -6.92 -39.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815215744.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.809 kcal (2) G-P(sol) polarization free energy of solvation -32.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds