Wall clock time and date at job start Tue Mar 31 2020 10:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42093 * 110.54603 * 2 1 4 4 O 1.42100 * 110.54375 * 223.24832 * 2 1 3 5 5 C 1.76197 * 104.44964 * 111.62649 * 2 1 3 6 6 C 1.34518 * 125.79349 * 90.34080 * 5 2 1 7 7 C 1.41379 * 106.84310 * 180.11646 * 6 5 2 8 8 C 1.50701 * 126.58090 * 179.83474 * 7 6 5 9 9 N 1.46901 * 109.46921 * 269.71146 * 8 7 6 10 10 C 1.46839 * 111.00222 * 294.20814 * 9 8 7 11 11 C 1.53034 * 109.52552 * 174.16216 * 10 9 8 12 12 C 1.53123 * 109.28182 * 59.17780 * 11 10 9 13 13 C 1.50696 * 109.57716 * 182.41084 * 12 11 10 14 14 H 1.07997 * 119.99878 * 119.72167 * 13 12 11 15 15 C 1.37871 * 120.00268 * 299.71257 * 13 12 11 16 16 N 1.31519 * 119.99776 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00297 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47382 * 60.00079 * 17 15 13 19 19 H 1.48504 * 109.47437 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.47349 * 300.00485 * 17 15 13 21 21 C 1.53120 * 109.16070 * 302.35293 * 12 11 10 22 22 C 1.46849 * 110.99649 * 169.99608 * 9 8 7 23 23 C 1.34511 * 106.84181 * 359.57434 * 7 6 5 24 24 O 1.34306 * 108.42301 * 0.26030 * 23 7 6 25 25 H 1.08998 * 109.47361 * 308.37759 * 1 2 3 26 26 H 1.08994 * 109.47325 * 68.37437 * 1 2 3 27 27 H 1.09004 * 109.47511 * 188.37625 * 1 2 3 28 28 H 1.08006 * 126.57799 * 359.94961 * 6 5 2 29 29 H 1.09002 * 109.47060 * 29.71327 * 8 7 6 30 30 H 1.09001 * 109.47380 * 149.71414 * 8 7 6 31 31 H 1.09006 * 109.46266 * 294.17473 * 10 9 8 32 32 H 1.09002 * 109.46276 * 54.14664 * 10 9 8 33 33 H 1.09006 * 109.50444 * 299.24199 * 11 10 9 34 34 H 1.09002 * 109.53860 * 179.13912 * 11 10 9 35 35 H 1.09005 * 109.51783 * 62.25186 * 12 11 10 36 36 H 0.97006 * 120.00096 * 179.97438 * 16 15 13 37 37 H 1.09005 * 109.50142 * 297.71204 * 21 12 11 38 38 H 1.08993 * 109.53791 * 177.61458 * 21 12 11 39 39 H 1.08991 * 109.46839 * 305.85721 * 22 9 8 40 40 H 1.09005 * 109.46224 * 65.84006 * 22 9 8 41 41 H 1.08005 * 125.79189 * 180.30083 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3305 0.0000 4 8 2.3126 -0.9692 -0.9117 5 6 2.2536 -0.6288 1.5861 6 6 2.4562 -1.9233 1.8907 7 6 2.7846 -1.9743 3.2649 8 6 3.0951 -3.2105 4.0689 9 7 1.8549 -3.7400 4.6515 10 6 1.2965 -2.8066 5.6380 11 6 -0.0638 -3.3201 6.1153 12 6 0.1101 -4.7076 6.7392 13 6 -1.2340 -5.2450 7.1581 14 1 -1.6045 -6.1653 6.7313 15 6 -1.9907 -4.5620 8.0864 16 7 -1.5397 -3.4411 8.6060 17 14 -3.6565 -5.2285 8.6062 18 1 -3.4854 -6.5766 9.2049 19 1 -4.2647 -4.3154 9.6071 20 1 -4.5441 -5.3231 7.4194 21 6 0.7380 -5.6479 5.7067 22 6 2.0751 -5.0668 5.2412 23 6 2.7723 -0.7070 3.7158 24 8 2.4500 0.1037 2.6946 25 1 -0.3634 0.6380 0.8056 26 1 -0.3633 0.3787 -0.9553 27 1 -0.3634 -1.0167 0.1497 28 1 2.3798 -2.7630 1.2157 29 1 3.5419 -3.9634 3.4196 30 1 3.7931 -2.9589 4.8673 31 1 1.9739 -2.7286 6.4884 32 1 1.1738 -1.8249 5.1802 33 1 -0.7461 -3.3854 5.2676 34 1 -0.4716 -2.6353 6.8588 35 1 0.7615 -4.6361 7.6104 36 1 -2.0722 -2.9603 9.2589 37 1 0.0685 -5.7497 4.8526 38 1 0.9037 -6.6262 6.1578 39 1 2.5180 -5.7267 4.4954 40 1 2.7488 -4.9781 6.0936 41 1 2.9860 -0.3944 4.7272 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528444911.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:57 Heat of formation + Delta-G solvation = -50.797060 kcal Electronic energy + Delta-G solvation = -24103.909010 eV Core-core repulsion = 20499.020377 eV Total energy + Delta-G solvation = -3604.888632 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.76184 -38.34774 -37.41883 -36.28323 -34.73597 -33.05365 -31.36880 -30.18014 -29.87615 -29.61465 -26.81664 -24.51317 -22.74832 -22.04188 -21.69061 -20.83372 -19.02360 -18.63097 -17.99451 -16.88426 -16.43367 -16.25634 -16.01249 -15.92147 -15.16461 -14.61592 -14.46613 -13.98738 -13.67721 -13.54785 -13.43745 -13.19540 -12.92309 -12.62521 -12.45817 -12.42569 -12.31965 -12.13728 -11.76356 -11.49011 -11.42847 -11.28073 -10.98266 -10.77985 -10.55267 -10.28983 -10.06368 -9.96804 -9.48374 -9.13217 -8.97157 -8.75942 -8.33204 -7.85491 -6.01115 -4.06432 -0.33367 1.08295 2.22122 2.34324 3.02061 3.29878 3.34641 3.37424 3.54321 3.99644 4.40806 4.43499 4.45957 4.67524 4.70729 4.81943 4.96266 5.29102 5.35567 5.36456 5.55494 5.62685 5.68729 5.78090 5.82425 6.03190 6.11223 6.19728 6.24005 6.51902 6.56804 6.68841 6.79312 7.01798 7.08953 7.36407 7.53931 7.59550 7.77326 7.99739 8.10416 8.44216 8.97009 9.58136 11.05082 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.019562 B = 0.003121 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.012750 B = 8968.442514 C = 9532.165108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.644 4.644 2 S 2.537 3.463 3 O -0.928 6.928 4 O -0.923 6.923 5 C -0.582 4.582 6 C -0.062 4.062 7 C -0.179 4.179 8 C 0.118 3.882 9 N -0.532 5.532 10 C 0.054 3.946 11 C -0.103 4.103 12 C 0.048 3.952 13 C -0.512 4.512 14 H 0.054 0.946 15 C 0.061 3.939 16 N -0.893 5.893 17 Si 0.890 3.110 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.106 4.106 22 C 0.061 3.939 23 C 0.018 3.982 24 O -0.123 6.123 25 H 0.136 0.864 26 H 0.136 0.864 27 H 0.137 0.863 28 H 0.166 0.834 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.022 0.978 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.092 0.908 35 H 0.020 0.980 36 H 0.260 0.740 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.059 0.941 40 H 0.025 0.975 41 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.236 6.427 -14.172 17.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.711 3.289 3 O -0.925 6.925 4 O -0.920 6.920 5 C -0.712 4.712 6 C -0.083 4.083 7 C -0.181 4.181 8 C -0.010 4.010 9 N -0.257 5.257 10 C -0.073 4.073 11 C -0.141 4.141 12 C 0.030 3.970 13 C -0.550 4.550 14 H 0.072 0.928 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.718 3.282 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.144 4.144 22 C -0.067 4.067 23 C -0.054 4.054 24 O -0.017 6.017 25 H 0.155 0.845 26 H 0.154 0.846 27 H 0.155 0.845 28 H 0.183 0.817 29 H 0.100 0.900 30 H 0.058 0.942 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.110 0.890 35 H 0.038 0.962 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.043 0.957 41 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 7.394 7.062 -14.998 18.151 hybrid contribution -0.805 -0.804 1.864 2.184 sum 6.589 6.258 -13.133 15.970 Atomic orbital electron populations 1.30188 1.24366 1.12808 1.12180 1.04630 0.78097 0.74238 0.71921 1.93589 1.77568 1.36138 1.85224 1.93633 1.78114 1.62434 1.57839 1.35099 1.25223 1.00651 1.10182 1.21841 0.94820 0.95616 0.96061 1.20589 1.07669 0.95544 0.94331 1.20425 0.91926 0.92418 0.96242 1.62002 1.25012 1.03330 1.35388 1.22342 0.98700 0.94655 0.91639 1.21654 0.92080 1.00847 0.99560 1.18676 0.95375 0.90826 0.92147 1.21170 1.02681 1.08053 1.23070 0.92798 1.24961 0.97949 0.94971 0.96087 1.69862 1.37897 1.15895 1.29539 0.86691 0.84362 0.78791 0.78326 1.20351 1.21358 1.20320 1.21681 0.94123 0.98715 0.99891 1.22131 0.98790 0.89248 0.96482 1.24559 0.98871 0.89235 0.92772 1.84186 1.66774 1.35368 1.15375 0.84494 0.84607 0.84451 0.81687 0.90005 0.94183 0.95926 0.92689 0.93920 0.88955 0.96171 0.93042 0.92474 0.93068 0.92276 0.95664 0.77217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -3.51 10.79 101.05 1.09 -2.42 16 2 S 2.54 23.20 5.95 -107.50 -0.64 22.56 16 3 O -0.93 -11.60 17.95 -58.29 -1.05 -12.65 16 4 O -0.92 -10.68 17.70 -57.54 -1.02 -11.70 16 5 C -0.58 -6.83 6.98 29.42 0.21 -6.63 16 6 C -0.06 -0.77 10.51 -39.70 -0.42 -1.19 16 7 C -0.18 -2.35 5.05 -104.75 -0.53 -2.88 16 8 C 0.12 1.59 5.48 -4.97 -0.03 1.56 16 9 N -0.53 -8.89 4.65 -236.11 -1.10 -9.99 16 10 C 0.05 0.99 5.27 -3.84 -0.02 0.97 16 11 C -0.10 -2.35 5.13 -26.65 -0.14 -2.49 16 12 C 0.05 1.17 2.16 -91.65 -0.20 0.97 16 13 C -0.51 -13.79 8.56 -34.44 -0.29 -14.08 16 14 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 15 C 0.06 1.66 5.31 -17.82 -0.09 1.57 16 16 N -0.89 -24.93 11.37 55.43 0.63 -24.30 16 17 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 C -0.11 -2.15 5.32 -26.65 -0.14 -2.29 16 22 C 0.06 1.03 5.46 -3.83 -0.02 1.01 16 23 C 0.02 0.22 10.50 29.41 0.31 0.53 16 24 O -0.12 -1.59 10.65 5.68 0.06 -1.53 16 25 H 0.14 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.14 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.14 0.64 8.14 -51.92 -0.42 0.22 16 28 H 0.17 1.74 8.06 -52.48 -0.42 1.32 16 29 H 0.08 0.99 7.99 -51.93 -0.41 0.58 16 30 H 0.04 0.51 8.12 -51.93 -0.42 0.09 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.93 6.00 -51.93 -0.31 0.62 16 33 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.09 2.35 6.17 -51.93 -0.32 2.03 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.87 8.01 -51.93 -0.42 0.45 16 40 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.21 1.97 8.06 -52.48 -0.42 1.55 16 LS Contribution 347.39 15.07 5.24 5.24 Total: -1.00 -34.23 347.39 -9.25 -43.48 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -6.08 Total: -1.69 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: -0.28 Total: -25.36 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: -0.47 Total: -34.29 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -2.00 Total: -25.87 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 23.20 SS G_CDS: -0.64 Total: 22.56 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.23 -9.25 -43.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528444911.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.320 kcal (2) G-P(sol) polarization free energy of solvation -34.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds