Wall clock time and date at job start Tue Mar 31 2020 11:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42903 * 112.94577 * 50.33394 * 9 7 2 11 11 C 1.53954 * 113.74388 * 278.74046 * 9 7 2 12 12 N 1.47807 * 86.03668 * 222.08525 * 11 9 7 13 13 C 1.34774 * 134.45633 * 204.64086 * 12 11 9 14 14 O 1.21698 * 120.00280 * 179.86491 * 13 12 11 15 15 C 1.46657 * 119.99913 * 359.87026 * 13 12 11 16 16 C 1.37835 * 126.82026 * 179.68306 * 15 13 12 17 17 N 1.32968 * 107.98789 * 179.83496 * 16 15 13 18 18 C 1.31792 * 109.77717 * 0.44213 * 17 16 15 19 19 C 1.47826 * 125.50733 * 179.69033 * 18 17 16 20 20 C 1.39586 * 120.14092 * 179.77061 * 19 18 17 21 21 C 1.37961 * 119.84792 * 179.74224 * 20 19 18 22 22 C 1.38359 * 120.14717 * 0.51022 * 21 20 19 23 23 C 1.38360 * 120.29073 * 359.76173 * 22 21 20 24 24 C 1.37953 * 120.14831 * 359.97438 * 23 22 21 25 25 N 1.35904 * 108.98591 * 359.72582 * 18 17 16 26 26 H 0.97000 * 126.55844 * 180.02562 * 25 18 17 27 27 C 1.47586 * 91.05425 * 24.54926 * 12 11 9 28 28 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 29 29 H 0.96700 * 113.99800 * 309.66654 * 10 9 7 30 30 H 1.08995 * 113.76496 * 336.35212 * 11 9 7 31 31 H 1.09005 * 113.76577 * 107.74446 * 11 9 7 32 32 H 1.08000 * 126.00597 * 0.02562 * 16 15 13 33 33 H 1.08002 * 120.07835 * 359.96837 * 20 19 18 34 34 H 1.08002 * 119.92506 * 180.27089 * 21 20 19 35 35 H 1.07995 * 119.85436 * 179.74120 * 22 21 20 36 36 H 1.08008 * 119.92553 * 180.02562 * 23 22 21 37 37 H 1.08005 * 120.07521 * 180.02562 * 24 23 22 38 38 H 1.08993 * 113.76952 * 221.15022 * 27 12 11 39 39 H 1.08995 * 113.86700 * 89.76371 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2446 -2.5614 -1.0132 11 6 0.7562 -2.9292 1.3924 12 7 1.1919 -4.2900 1.0142 13 6 0.8427 -5.5338 1.3981 14 8 1.3865 -6.5005 0.8973 15 6 -0.1928 -5.7224 2.4193 16 6 -0.6607 -6.9226 2.9095 17 7 -1.5917 -6.6588 3.8216 18 6 -1.7499 -5.3552 3.9331 19 6 -2.7009 -4.6803 4.8416 20 6 -2.7724 -3.2866 4.8720 21 6 -3.6659 -2.6632 5.7184 22 6 -4.4825 -3.4160 6.5435 23 6 -4.4126 -4.7977 6.5223 24 6 -3.5274 -5.4338 5.6768 25 7 -0.8980 -4.7316 3.0773 26 1 -0.8026 -3.7744 2.9522 27 6 2.1609 -3.7402 0.0462 28 1 -0.4850 0.8401 0.0004 29 1 -0.3474 -1.7969 -1.0267 30 1 1.3275 -2.4975 2.2141 31 1 -0.3215 -2.8326 1.5249 32 1 -0.3274 -7.9047 2.6082 33 1 -2.1323 -2.6977 4.2318 34 1 -3.7253 -1.5851 5.7397 35 1 -5.1772 -2.9230 7.2072 36 1 -5.0531 -5.3796 7.1686 37 1 -3.4741 -6.5124 5.6609 38 1 2.2027 -4.2899 -0.8940 39 1 3.1462 -3.5468 0.4700 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571784792.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:05 Heat of formation + Delta-G solvation = 34.509404 kcal Electronic energy + Delta-G solvation = -25157.054953 eV Core-core repulsion = 21452.714286 eV Total energy + Delta-G solvation = -3704.340666 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.00298 -39.52085 -38.97317 -37.35645 -34.17628 -32.80268 -32.37159 -32.23003 -31.04827 -29.35427 -28.09242 -25.65579 -25.57456 -23.72907 -22.95108 -21.80246 -20.76527 -20.04255 -19.39942 -17.89241 -17.41215 -16.68824 -16.07182 -15.61063 -15.47080 -15.36631 -15.11508 -14.69811 -14.44043 -14.28214 -13.84484 -13.62860 -13.38822 -13.27193 -12.89842 -12.70016 -12.64911 -12.13495 -11.72262 -11.59747 -11.30217 -11.27368 -11.14848 -10.67153 -10.46213 -10.34957 -10.17234 -9.90916 -9.63489 -9.42658 -9.15801 -8.91373 -8.65277 -8.19083 -7.87925 -6.53914 -4.64916 0.63573 1.20844 1.70944 2.83402 2.92700 3.07187 3.13768 3.15797 3.31192 3.64327 3.75681 4.07270 4.11750 4.62136 4.68423 4.75722 4.81895 4.94559 5.04434 5.22617 5.33252 5.39490 5.47361 5.61509 5.66085 5.78183 5.89259 5.99577 6.10583 6.20465 6.21875 6.26845 6.29531 6.37829 6.43078 6.64777 6.71805 6.90139 7.20343 7.48633 7.65120 7.87728 8.19304 8.39189 8.51309 9.06954 9.25936 10.52876 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.012162 B = 0.004221 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.726078 B = 6632.089028 C = 8604.642331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.284 1.284 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.540 4.540 8 H 0.073 0.927 9 C 0.245 3.755 10 O -0.570 6.570 11 C 0.066 3.934 12 N -0.631 5.631 13 C 0.605 3.395 14 O -0.545 6.545 15 C -0.057 4.057 16 C 0.059 3.941 17 N -0.479 5.479 18 C 0.258 3.742 19 C -0.016 4.016 20 C -0.107 4.107 21 C -0.115 4.115 22 C -0.112 4.112 23 C -0.121 4.121 24 C -0.077 4.077 25 N -0.541 5.541 26 H 0.425 0.575 27 C 0.116 3.884 28 H 0.275 0.725 29 H 0.392 0.608 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.187 0.813 33 H 0.121 0.879 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.138 0.862 38 H 0.076 0.924 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.209 -2.932 11.661 14.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.129 4.129 3 Si 0.735 3.265 4 H -0.209 1.209 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.578 4.578 8 H 0.091 0.909 9 C 0.203 3.797 10 O -0.382 6.382 11 C -0.057 4.057 12 N -0.365 5.365 13 C 0.394 3.606 14 O -0.424 6.424 15 C -0.175 4.175 16 C -0.096 4.096 17 N -0.198 5.198 18 C -0.001 4.001 19 C -0.018 4.018 20 C -0.127 4.127 21 C -0.133 4.133 22 C -0.131 4.131 23 C -0.139 4.139 24 C -0.096 4.096 25 N -0.147 5.147 26 H 0.268 0.732 27 C -0.005 4.005 28 H 0.085 0.915 29 H 0.247 0.753 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.204 0.796 33 H 0.139 0.861 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.156 0.844 38 H 0.094 0.906 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.233 -4.656 11.707 14.527 hybrid contribution 0.594 2.577 -0.314 2.663 sum -6.639 -2.079 11.392 13.349 Atomic orbital electron populations 1.69380 1.06204 1.28483 1.49798 1.25073 0.95047 0.99955 0.92837 0.86367 0.79530 0.81440 0.79118 1.20932 1.19845 1.19719 1.21464 0.94027 0.89772 1.52537 0.90876 1.19778 0.85624 0.91449 0.82879 1.86090 1.47022 1.49872 1.55192 1.24523 0.98987 0.78168 1.04043 1.50164 1.40394 1.04243 1.41663 1.16448 0.81305 0.82351 0.80492 1.90797 1.55792 1.39235 1.56595 1.21708 1.02761 0.89491 1.03493 1.22819 0.94704 0.97365 0.94755 1.70205 1.18612 1.11561 1.19409 1.21318 0.95260 0.88311 0.95253 1.17646 0.95702 0.92278 0.96131 1.21180 0.99239 0.92962 0.99352 1.21043 0.95833 1.00290 0.96085 1.21303 0.98890 0.94141 0.98741 1.21132 0.98897 0.94675 0.99182 1.21218 0.93811 1.00770 0.93833 1.43823 1.29672 1.10517 1.30736 0.73152 1.23493 0.93235 0.92448 0.91366 0.91500 0.75290 0.89491 0.92018 0.79626 0.86076 0.85328 0.85738 0.85417 0.84424 0.90597 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.35 11.20 55.43 0.62 -20.72 16 2 C 0.07 1.73 5.40 -17.82 -0.10 1.64 16 3 Si 0.91 18.50 29.54 -169.99 -5.02 13.48 16 4 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.54 -12.76 8.61 -34.44 -0.30 -13.06 16 8 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.24 5.51 1.40 -90.84 -0.13 5.39 16 10 O -0.57 -13.97 13.49 -35.23 -0.48 -14.44 16 11 C 0.07 1.30 6.82 -2.84 -0.02 1.28 16 12 N -0.63 -12.87 3.61 -179.65 -0.65 -13.52 16 13 C 0.61 12.45 8.02 -12.86 -0.10 12.35 16 14 O -0.55 -12.42 17.64 5.19 0.09 -12.33 16 15 C -0.06 -1.02 7.05 -81.71 -0.58 -1.60 16 16 C 0.06 0.99 11.69 -17.21 -0.20 0.79 16 17 N -0.48 -7.83 10.79 -10.76 -0.12 -7.95 16 18 C 0.26 3.98 7.74 -154.89 -1.20 2.78 16 19 C -0.02 -0.20 5.87 -104.97 -0.62 -0.82 16 20 C -0.11 -1.25 9.69 -39.18 -0.38 -1.63 16 21 C -0.11 -1.12 10.03 -39.64 -0.40 -1.51 16 22 C -0.11 -0.98 10.04 -39.49 -0.40 -1.37 16 23 C -0.12 -1.10 10.03 -39.64 -0.40 -1.50 16 24 C -0.08 -0.87 9.69 -39.19 -0.38 -1.25 16 25 N -0.54 -8.64 5.86 -7.13 -0.04 -8.68 16 26 H 0.43 6.35 5.04 -40.82 -0.21 6.14 16 27 C 0.12 2.41 8.23 -2.96 -0.02 2.38 16 28 H 0.27 6.26 8.31 -40.82 -0.34 5.92 16 29 H 0.39 9.66 6.60 45.56 0.30 9.96 16 30 H 0.09 1.63 8.09 -51.93 -0.42 1.21 16 31 H 0.06 1.19 6.55 -51.93 -0.34 0.85 16 32 H 0.19 2.75 8.06 -52.49 -0.42 2.33 16 33 H 0.12 1.34 7.14 -52.49 -0.37 0.97 16 34 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.14 1.53 7.82 -52.48 -0.41 1.11 16 38 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 39 H 0.09 1.69 8.09 -51.93 -0.42 1.27 16 LS Contribution 339.59 15.07 5.12 5.12 Total: -1.00 -28.10 339.59 -9.21 -37.31 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -3.53 Total: 17.86 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -5.21 Total: 3.87 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: -0.19 Total: -50.87 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.38 Total: -26.77 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.02 Total: 13.48 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.10 -9.21 -37.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571784792.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.823 kcal (2) G-P(sol) polarization free energy of solvation -28.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds