Wall clock time and date at job start Tue Mar 31 2020 10:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99891 * 2 1 4 4 H 1.48497 * 109.47017 * 269.99611 * 3 2 1 5 5 H 1.48498 * 109.47093 * 30.00442 * 3 2 1 6 6 H 1.48508 * 109.46865 * 150.00102 * 3 2 1 7 7 C 1.38807 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49091 * 180.02562 * 9 7 2 11 11 C 1.53950 * 86.11527 * 155.35578 * 10 9 7 12 12 N 1.46503 * 113.74313 * 269.15304 * 11 10 9 13 13 C 1.34768 * 120.00164 * 203.07427 * 12 11 10 14 14 O 1.21553 * 120.00180 * 0.02562 * 13 12 11 15 15 C 1.47922 * 120.00194 * 179.97438 * 13 12 11 16 16 C 1.38256 * 119.24754 * 180.02562 * 15 13 12 17 17 C 1.40696 * 118.65565 * 179.97438 * 16 15 13 18 18 C 1.40237 * 122.05313 * 179.97438 * 17 16 15 19 19 C 1.36314 * 119.47627 * 179.97438 * 18 17 16 20 20 C 1.39243 * 120.94804 * 0.04313 * 19 18 17 21 21 C 1.36365 * 121.05998 * 359.95503 * 20 19 18 22 22 C 1.40048 * 119.58847 * 0.02562 * 21 20 19 23 23 C 1.41346 * 121.85970 * 179.97438 * 22 21 20 24 24 O 1.35499 * 119.94593 * 0.02672 * 23 22 21 25 25 N 1.31381 * 120.10126 * 179.76477 * 23 22 21 26 26 C 1.47805 * 134.45487 * 359.86555 * 9 7 2 27 27 H 0.97002 * 120.00155 * 0.02562 * 1 2 3 28 28 H 1.08999 * 113.77186 * 41.05536 * 10 9 7 29 29 H 1.09004 * 113.76624 * 269.65013 * 10 9 7 30 30 H 1.09002 * 113.74276 * 137.95197 * 11 10 9 31 31 H 0.97006 * 119.99523 * 23.07305 * 12 11 10 32 32 H 1.08007 * 120.67275 * 359.95221 * 16 15 13 33 33 H 1.07998 * 120.26326 * 359.97438 * 18 17 16 34 34 H 1.08004 * 119.52773 * 179.97438 * 19 18 17 35 35 H 1.07996 * 119.47502 * 179.97438 * 20 19 18 36 36 H 1.07997 * 120.20635 * 180.02562 * 21 20 19 37 37 H 0.96703 * 114.00148 * 90.00053 * 24 23 22 38 38 H 1.08999 * 113.77157 * 90.38334 * 26 9 7 39 39 H 1.09002 * 113.84143 * 318.91597 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 1.7201 -3.8102 -0.0019 11 6 0.3465 -4.0832 0.6374 12 7 0.3621 -4.0583 2.1021 13 6 -0.5902 -4.7109 2.7974 14 8 -1.4619 -5.3207 2.2092 15 6 -0.5741 -4.6862 4.2763 16 6 -1.5583 -5.3616 4.9739 17 6 -1.5308 -5.3303 6.3803 18 6 -2.4934 -5.9893 7.1584 19 6 -2.4161 -5.9246 8.5178 20 6 -1.3960 -5.2131 9.1439 21 6 -0.4442 -4.5612 8.4169 22 6 -0.4914 -4.6058 7.0179 23 6 0.4697 -3.9474 6.2176 24 8 1.4728 -3.2487 6.8023 25 7 0.3950 -4.0160 4.9077 26 6 -0.1058 -2.7570 0.0001 27 1 -0.4850 0.8401 -0.0004 28 1 2.5619 -4.0327 0.6538 29 1 1.8325 -4.2346 -0.9996 30 1 -0.1594 -4.9598 0.2327 31 1 1.0580 -3.5720 2.5714 32 1 -2.3329 -5.9020 4.4499 33 1 -3.2898 -6.5438 6.6844 34 1 -3.1573 -6.4316 9.1179 35 1 -1.3577 -5.1773 10.2226 36 1 0.3412 -4.0138 8.9168 37 1 2.2665 -3.7724 6.9779 38 1 -0.5312 -2.8713 -0.9969 39 1 -0.7189 -2.1405 0.6574 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030442001.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:58 Heat of formation + Delta-G solvation = 44.527178 kcal Electronic energy + Delta-G solvation = -24872.648356 eV Core-core repulsion = 21168.742092 eV Total energy + Delta-G solvation = -3703.906263 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.27012 -39.44460 -38.13949 -37.62317 -36.52498 -33.30929 -32.49429 -31.85345 -31.29010 -29.68471 -27.50858 -24.99038 -24.77525 -24.24563 -22.94590 -22.38354 -21.05916 -19.23398 -18.86359 -18.20489 -17.79878 -16.72098 -16.63684 -16.05953 -15.59551 -15.33971 -14.91688 -14.59746 -14.51643 -14.23741 -13.83812 -13.71028 -13.54722 -13.35303 -12.68742 -12.54031 -12.22515 -12.14514 -11.92186 -11.56709 -11.50852 -11.18918 -10.83004 -10.53734 -10.34288 -10.23869 -10.17184 -9.78974 -9.46143 -9.45494 -9.42116 -8.79309 -8.42295 -8.18576 -6.85675 -5.71410 -3.04967 -0.03207 0.44538 1.54248 2.35388 3.20151 3.30476 3.42467 3.46937 3.49561 3.50268 3.89875 4.28943 4.31364 4.48468 4.49122 4.61400 4.76481 4.86987 5.05944 5.15805 5.18187 5.42436 5.48837 5.53280 5.60614 5.62748 5.68131 6.02938 6.05938 6.13435 6.20131 6.28162 6.44406 6.45757 6.54496 6.85094 7.23282 7.25433 7.35766 7.59289 7.65883 8.01195 8.09158 8.59814 9.08109 9.75187 10.62432 11.45016 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.017090 B = 0.003405 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.958207 B = 8222.024908 C = 9180.692689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.079 0.921 9 N -0.611 5.611 10 C 0.111 3.889 11 C 0.086 3.914 12 N -0.668 5.668 13 C 0.568 3.432 14 O -0.545 6.545 15 C 0.091 3.909 16 C -0.098 4.098 17 C -0.022 4.022 18 C -0.103 4.103 19 C -0.099 4.099 20 C -0.118 4.118 21 C -0.082 4.082 22 C -0.109 4.109 23 C 0.353 3.647 24 O -0.471 6.471 25 N -0.478 5.478 26 C 0.152 3.848 27 H 0.253 0.747 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.415 0.585 32 H 0.157 0.843 33 H 0.137 0.863 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.138 0.862 37 H 0.403 0.597 38 H 0.037 0.963 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.057 -14.584 19.281 24.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.353 4.353 8 H 0.097 0.903 9 N -0.338 5.338 10 C -0.015 4.015 11 C -0.020 4.020 12 N -0.316 5.316 13 C 0.352 3.648 14 O -0.423 6.423 15 C -0.035 4.035 16 C -0.119 4.119 17 C -0.027 4.027 18 C -0.121 4.121 19 C -0.118 4.118 20 C -0.136 4.136 21 C -0.101 4.101 22 C -0.113 4.113 23 C 0.158 3.842 24 O -0.278 6.278 25 N -0.199 5.199 26 C 0.025 3.975 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.252 0.748 32 H 0.175 0.825 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.155 0.845 37 H 0.261 0.739 38 H 0.055 0.945 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.407 -13.784 18.202 22.959 hybrid contribution 0.600 0.678 0.600 1.086 sum -1.807 -13.105 18.802 22.990 Atomic orbital electron populations 1.69827 1.05007 1.25285 1.56395 1.24780 0.95626 0.97493 1.02394 0.86139 0.78649 0.83595 0.77474 1.21697 1.21691 1.20609 1.18995 0.90205 0.81973 1.44077 0.90272 1.46120 1.02212 0.99152 1.86313 1.22909 0.94381 0.86947 0.97277 1.22961 0.99325 1.00389 0.79314 1.45411 1.28985 1.50280 1.06886 1.17712 0.82262 0.79770 0.85079 1.90760 1.36931 1.44995 1.69663 1.20710 0.92123 0.96253 0.94442 1.22202 0.98738 0.98418 0.92529 1.18066 0.94705 0.96702 0.93187 1.21045 0.98158 0.99016 0.93923 1.21030 0.98048 0.98035 0.94707 1.20996 0.94713 0.97379 1.00481 1.20964 0.99230 0.98044 0.91888 1.19057 0.97512 0.99598 0.95144 1.19122 0.89382 0.89369 0.86320 1.84765 1.26150 1.38172 1.78708 1.66898 1.25105 1.16640 1.11255 1.22737 0.88283 0.89270 0.97160 0.93681 0.93406 0.93470 0.89105 0.74816 0.82527 0.84474 0.85261 0.85337 0.84464 0.73856 0.94532 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.98 11.39 55.49 0.63 -27.35 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.22 -6.38 10.70 -15.06 -0.16 -6.54 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 N -0.61 -15.80 3.70 -177.88 -0.66 -16.46 16 10 C 0.11 2.29 8.68 -2.96 -0.03 2.26 16 11 C 0.09 1.75 4.40 -70.15 -0.31 1.44 16 12 N -0.67 -13.03 5.36 -56.26 -0.30 -13.33 16 13 C 0.57 10.66 7.80 -12.30 -0.10 10.56 16 14 O -0.54 -11.11 15.89 5.32 0.08 -11.03 16 15 C 0.09 1.47 6.73 -83.09 -0.56 0.91 16 16 C -0.10 -1.32 9.41 -38.65 -0.36 -1.68 16 17 C -0.02 -0.25 5.74 -106.84 -0.61 -0.87 16 18 C -0.10 -0.89 9.81 -39.52 -0.39 -1.28 16 19 C -0.10 -0.70 9.95 -39.90 -0.40 -1.09 16 20 C -0.12 -0.83 9.95 -39.88 -0.40 -1.23 16 21 C -0.08 -0.70 9.58 -39.58 -0.38 -1.08 16 22 C -0.11 -1.26 5.76 -106.66 -0.61 -1.87 16 23 C 0.35 4.67 7.80 -16.56 -0.13 4.54 16 24 O -0.47 -5.16 12.83 -18.19 -0.23 -5.39 16 25 N -0.48 -7.63 9.47 -9.60 -0.09 -7.72 16 26 C 0.15 3.74 7.32 -2.85 -0.02 3.72 16 27 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.09 1.74 7.51 -51.93 -0.39 1.35 16 31 H 0.41 8.25 8.03 -40.82 -0.33 7.92 16 32 H 0.16 1.92 7.59 -52.48 -0.40 1.53 16 33 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 35 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 36 H 0.14 0.92 7.65 -52.49 -0.40 0.52 16 37 H 0.40 2.22 9.06 45.56 0.41 2.63 16 38 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 2.15 7.16 -51.93 -0.37 1.78 16 LS Contribution 340.39 15.07 5.13 5.13 Total: -1.00 -35.61 340.39 -8.57 -44.18 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -3.56 Total: 6.85 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: -4.55 Total: 7.51 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: -0.42 Total: -64.86 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.15 Total: -16.42 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.61 -8.57 -44.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030442001.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.704 kcal (2) G-P(sol) polarization free energy of solvation -35.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds