Wall clock time and date at job start Tue Mar 31 2020 10:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38841 * 125.86199 * 2 1 4 4 C 1.46216 * 126.54271 * 0.02562 * 3 2 1 5 5 C 1.38081 * 119.99582 * 162.83639 * 4 3 2 6 6 C 1.43194 * 120.00153 * 352.93575 * 5 4 3 7 7 N 4.79276 * 138.26470 * 23.41619 * 2 1 3 8 8 C 1.46821 * 119.99862 * 173.20699 * 5 4 3 9 9 O 1.21599 * 119.99833 * 359.72731 * 8 5 4 10 10 O 1.34842 * 120.00002 * 179.72972 * 8 5 4 11 11 C 1.45206 * 116.99881 * 179.97438 * 10 8 5 12 12 C 1.53001 * 109.46697 * 179.97438 * 11 10 8 13 13 C 1.50704 * 109.46676 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99958 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00121 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99782 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00072 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47378 * 89.99972 * 17 15 13 19 19 H 1.48500 * 109.46893 * 209.99911 * 17 15 13 20 20 H 1.48502 * 109.47198 * 329.99537 * 17 15 13 21 21 C 1.41802 * 106.90686 * 179.74235 * 3 2 1 22 22 C 1.36215 * 106.99344 * 0.26679 * 21 3 2 23 23 C 1.43207 * 125.76131 * 180.02562 * 22 21 3 24 24 N 4.71976 * 151.28049 * 179.69871 * 2 1 3 25 25 N 1.34313 * 125.85944 * 180.20831 * 2 1 3 26 26 C 1.46507 * 125.32838 * 359.97202 * 25 2 1 27 27 H 1.08996 * 109.47112 * 90.02067 * 1 2 3 28 28 H 1.09003 * 109.47041 * 210.02135 * 1 2 3 29 29 H 1.08997 * 109.46731 * 330.01333 * 1 2 3 30 30 H 1.07996 * 120.00501 * 342.84311 * 4 3 2 31 31 H 1.08990 * 109.46915 * 299.99645 * 11 10 8 32 32 H 1.09004 * 109.46794 * 59.99922 * 11 10 8 33 33 H 1.08990 * 109.47587 * 299.99771 * 12 11 10 34 34 H 1.09004 * 109.47123 * 60.00661 * 12 11 10 35 35 H 0.96993 * 120.00119 * 180.02562 * 16 15 13 36 36 H 1.07997 * 126.50712 * 180.28336 * 21 3 2 37 37 H 1.08995 * 109.46776 * 270.31583 * 26 25 2 38 38 H 1.08997 * 109.47016 * 30.31461 * 26 25 2 39 39 H 1.08997 * 109.46688 * 150.31844 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3204 1.1252 0.0000 4 6 1.8784 2.5190 0.0005 5 6 2.7590 3.5223 0.3534 6 6 4.0554 3.1906 0.8631 7 7 5.0835 2.9277 1.2679 8 6 2.3639 4.9292 0.2115 9 8 1.2630 5.2109 -0.2213 10 8 3.2218 5.9090 0.5612 11 6 2.7641 7.2768 0.3936 12 6 3.8649 8.2411 0.8400 13 6 3.3901 9.6607 0.6654 14 1 2.4019 9.8556 0.2755 15 6 4.2172 10.7108 1.0035 16 7 5.4203 10.4735 1.4788 17 14 3.6284 12.4704 0.7878 18 1 2.9569 12.9238 2.0321 19 1 4.7908 13.3500 0.5039 20 1 2.6698 12.5363 -0.3444 21 6 3.6615 0.6646 0.0061 22 6 3.6149 -0.6967 0.0035 23 6 4.7476 -1.5729 0.0083 24 7 5.6462 -2.2679 0.0119 25 7 2.2938 -1.0885 -0.0040 26 6 1.8214 -2.4753 -0.0084 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3633 0.8901 0.5136 30 1 0.8632 2.7637 -0.2749 31 1 2.5281 7.4549 -0.6555 32 1 1.8723 7.4383 0.9992 33 1 4.1006 8.0629 1.8891 34 1 4.7569 8.0797 0.2346 35 1 6.0020 11.2122 1.7170 36 1 4.5511 1.2769 0.0120 37 1 1.6993 -2.8208 1.0181 38 1 0.8643 -2.5314 -0.5269 39 1 2.5492 -3.1054 -0.5197 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044949653.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:31 Heat of formation + Delta-G solvation = 35.702473 kcal Electronic energy + Delta-G solvation = -23595.436620 eV Core-core repulsion = 19891.147689 eV Total energy + Delta-G solvation = -3704.288931 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.22880 -39.92725 -37.16967 -36.89520 -36.15292 -34.58409 -33.31221 -32.91358 -32.00344 -30.24245 -27.75818 -27.47457 -25.38799 -24.37788 -22.21498 -21.28718 -20.84196 -20.43012 -19.23900 -17.59339 -16.56199 -16.47816 -16.30167 -15.93712 -15.89415 -15.37256 -14.74713 -14.52098 -14.21588 -14.02546 -13.92784 -13.71667 -13.57588 -13.43240 -13.24884 -13.22281 -13.01065 -12.82969 -12.59349 -12.53565 -12.32592 -12.16980 -11.92181 -11.23377 -11.02588 -10.75015 -10.69562 -10.54793 -10.34155 -9.62636 -9.61424 -9.26722 -9.15409 -8.41003 -8.32389 -6.06333 -4.11014 0.13706 0.85903 1.60202 2.20693 2.45900 2.64430 2.68940 2.98827 3.16465 3.31291 3.34315 3.37697 3.41719 3.64588 3.89003 3.99463 4.02024 4.32736 4.40062 4.41433 4.56852 4.69162 4.79643 4.91153 5.02859 5.21056 5.27528 5.30038 5.35487 5.68717 5.75341 6.01763 6.10158 6.12590 6.21588 6.33817 6.66651 6.91849 6.98536 7.55015 7.61427 7.66984 7.89522 8.14777 8.27567 8.94802 9.53180 11.05164 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.026570 B = 0.002290 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.565457 B =12221.993229 C =13176.151904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.123 3.877 3 C -0.194 4.194 4 C 0.108 3.892 5 C -0.115 4.115 6 C 0.267 3.733 7 N -0.414 5.414 8 C 0.516 3.484 9 O -0.512 6.512 10 O -0.350 6.350 11 C 0.077 3.923 12 C 0.023 3.977 13 C -0.526 4.526 14 H 0.060 0.940 15 C 0.060 3.940 16 N -0.889 5.889 17 Si 0.900 3.100 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.076 4.076 22 C 0.047 3.953 23 C 0.278 3.722 24 N -0.401 5.401 25 N -0.411 5.411 26 C 0.059 3.941 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.165 0.835 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.028 0.972 34 H 0.028 0.972 35 H 0.263 0.737 36 H 0.161 0.839 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.946 -27.780 -4.250 31.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.000 4.000 3 C -0.201 4.201 4 C 0.084 3.916 5 C -0.120 4.120 6 C -0.047 4.047 7 N -0.090 5.090 8 C 0.360 3.640 9 O -0.403 6.403 10 O -0.266 6.266 11 C 0.004 3.996 12 C -0.014 4.014 13 C -0.564 4.564 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.528 5.528 17 Si 0.727 3.273 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.103 4.103 22 C -0.062 4.062 23 C -0.037 4.037 24 N -0.077 5.077 25 N -0.084 5.084 26 C -0.082 4.082 27 H 0.110 0.890 28 H 0.095 0.905 29 H 0.117 0.883 30 H 0.182 0.818 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.178 0.822 37 H 0.105 0.895 38 H 0.117 0.883 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.167 -29.413 -3.675 31.675 hybrid contribution -0.880 1.435 -0.233 1.699 sum -12.048 -27.978 -3.907 30.711 Atomic orbital electron populations 1.20658 0.85848 1.04999 1.04353 1.21140 0.93923 0.84665 1.00273 1.18325 0.92148 0.91612 1.17971 1.22316 0.97999 0.87834 0.83408 1.17302 0.90179 0.91404 1.13127 1.25160 0.92611 0.93168 0.93797 1.81217 1.10555 1.08224 1.09032 1.20268 0.82905 0.85867 0.74948 1.90853 1.21849 1.84289 1.43355 1.86667 1.45068 1.18413 1.76407 1.23704 1.00406 0.74313 1.01143 1.19185 0.92952 0.91335 0.97973 1.20969 1.01245 0.89964 1.44199 0.92163 1.24998 0.94804 0.99508 0.94930 1.69979 1.07756 1.32011 1.43014 0.86470 0.78288 0.83944 0.78586 1.20507 1.21118 1.19695 1.21777 0.98123 0.91509 0.98927 1.15110 0.79721 0.90448 1.20927 1.24244 0.92869 0.93039 0.93579 1.81329 1.08998 1.07330 1.10085 1.43590 1.04317 1.07114 1.53371 1.22325 1.02449 0.78744 1.04633 0.89040 0.90486 0.88329 0.81803 0.91953 0.91959 0.95339 0.95332 0.92717 0.82155 0.89510 0.88265 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.13 9.65 36.01 0.35 0.21 16 2 C 0.12 0.61 6.95 -81.28 -0.57 0.05 16 3 C -0.19 -1.52 5.92 -105.11 -0.62 -2.14 16 4 C 0.11 0.91 9.36 -36.44 -0.34 0.57 16 5 C -0.11 -1.46 5.90 -104.56 -0.62 -2.07 16 6 C 0.27 3.92 11.77 -22.48 -0.26 3.66 16 7 N -0.41 -6.85 17.32 41.83 0.72 -6.12 16 8 C 0.52 8.47 7.87 34.20 0.27 8.74 16 9 O -0.51 -8.79 16.10 -19.34 -0.31 -9.10 16 10 O -0.35 -7.03 9.76 -40.88 -0.40 -7.42 16 11 C 0.08 1.68 5.42 37.16 0.20 1.88 16 12 C 0.02 0.60 5.35 -27.88 -0.15 0.45 16 13 C -0.53 -14.77 9.11 -34.44 -0.31 -15.08 16 14 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 17 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 C -0.08 -0.74 9.29 -38.95 -0.36 -1.10 16 22 C 0.05 0.40 6.68 -83.98 -0.56 -0.16 16 23 C 0.28 2.80 15.10 -22.47 -0.34 2.46 16 24 N -0.40 -4.82 18.54 41.84 0.78 -4.05 16 25 N -0.41 -2.21 3.12 -116.57 -0.36 -2.57 16 26 C 0.06 0.10 10.45 59.85 0.63 0.73 16 27 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 28 H 0.08 -0.01 7.63 -51.93 -0.40 -0.41 16 29 H 0.10 0.10 7.86 -51.93 -0.41 -0.31 16 30 H 0.16 0.97 7.52 -52.49 -0.39 0.57 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.16 1.87 5.11 -52.49 -0.27 1.60 16 37 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 38 H 0.10 -0.08 7.56 -51.93 -0.39 -0.47 16 39 H 0.09 0.18 7.74 -51.93 -0.40 -0.22 16 LS Contribution 361.55 15.07 5.45 5.45 Total: -1.00 -35.63 361.55 -5.54 -41.16 By element: Atomic # 1 Polarization: -3.23 SS G_CDS: -4.34 Total: -7.57 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -2.79 Total: -0.21 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 1.87 Total: -38.74 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.71 Total: -16.53 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.63 -5.54 -41.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044949653.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.867 kcal (2) G-P(sol) polarization free energy of solvation -35.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds