Wall clock time and date at job start Tue Mar 31 2020 10:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38841 * 125.86199 * 2 1 4 4 C 1.46216 * 126.54271 * 0.02562 * 3 2 1 5 5 C 1.38081 * 119.99582 * 162.83639 * 4 3 2 6 6 C 1.43194 * 120.00153 * 352.93575 * 5 4 3 7 7 N 4.79276 * 138.26470 * 23.41619 * 2 1 3 8 8 C 1.46821 * 119.99862 * 173.20699 * 5 4 3 9 9 O 1.21599 * 119.99833 * 359.72731 * 8 5 4 10 10 O 1.34842 * 120.00002 * 179.72972 * 8 5 4 11 11 C 1.45206 * 116.99881 * 179.97438 * 10 8 5 12 12 C 1.53001 * 109.46697 * 179.97438 * 11 10 8 13 13 C 1.50704 * 109.46676 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99958 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00121 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99782 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00072 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47378 * 89.99972 * 17 15 13 19 19 H 1.48500 * 109.46893 * 209.99911 * 17 15 13 20 20 H 1.48502 * 109.47198 * 329.99537 * 17 15 13 21 21 C 1.41802 * 106.90686 * 179.74235 * 3 2 1 22 22 C 1.36215 * 106.99344 * 0.26679 * 21 3 2 23 23 C 1.43207 * 125.76131 * 180.02562 * 22 21 3 24 24 N 4.71976 * 151.28049 * 179.69871 * 2 1 3 25 25 N 1.34313 * 125.85944 * 180.20831 * 2 1 3 26 26 C 1.46507 * 125.32838 * 359.97202 * 25 2 1 27 27 H 1.08996 * 109.47112 * 90.02067 * 1 2 3 28 28 H 1.09003 * 109.47041 * 210.02135 * 1 2 3 29 29 H 1.08997 * 109.46731 * 330.01333 * 1 2 3 30 30 H 1.07996 * 120.00501 * 342.84311 * 4 3 2 31 31 H 1.08990 * 109.46915 * 299.99645 * 11 10 8 32 32 H 1.09004 * 109.46794 * 59.99922 * 11 10 8 33 33 H 1.08990 * 109.47587 * 299.99771 * 12 11 10 34 34 H 1.09004 * 109.47123 * 60.00661 * 12 11 10 35 35 H 0.96993 * 120.00119 * 180.02562 * 16 15 13 36 36 H 1.07997 * 126.50712 * 180.28336 * 21 3 2 37 37 H 1.08995 * 109.46776 * 270.31583 * 26 25 2 38 38 H 1.08997 * 109.47016 * 30.31461 * 26 25 2 39 39 H 1.08997 * 109.46688 * 150.31844 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3204 1.1252 0.0000 4 6 1.8784 2.5190 0.0005 5 6 2.7590 3.5223 0.3534 6 6 4.0554 3.1906 0.8631 7 7 5.0835 2.9277 1.2679 8 6 2.3639 4.9292 0.2115 9 8 1.2630 5.2109 -0.2213 10 8 3.2218 5.9090 0.5612 11 6 2.7641 7.2768 0.3936 12 6 3.8649 8.2411 0.8400 13 6 3.3901 9.6607 0.6654 14 1 2.4019 9.8556 0.2755 15 6 4.2172 10.7108 1.0035 16 7 5.4203 10.4735 1.4788 17 14 3.6284 12.4704 0.7878 18 1 2.9569 12.9238 2.0321 19 1 4.7908 13.3500 0.5039 20 1 2.6698 12.5363 -0.3444 21 6 3.6615 0.6646 0.0061 22 6 3.6149 -0.6967 0.0035 23 6 4.7476 -1.5729 0.0083 24 7 5.6462 -2.2679 0.0119 25 7 2.2938 -1.0885 -0.0040 26 6 1.8214 -2.4753 -0.0084 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3633 0.8901 0.5136 30 1 0.8632 2.7637 -0.2749 31 1 2.5281 7.4549 -0.6555 32 1 1.8723 7.4383 0.9992 33 1 4.1006 8.0629 1.8891 34 1 4.7569 8.0797 0.2346 35 1 6.0020 11.2122 1.7170 36 1 4.5511 1.2769 0.0120 37 1 1.6993 -2.8208 1.0181 38 1 0.8643 -2.5314 -0.5269 39 1 2.5492 -3.1054 -0.5197 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044949653.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:30 Heat of formation + Delta-G solvation = 14.402612 kcal Electronic energy + Delta-G solvation = -23596.360252 eV Core-core repulsion = 19891.147689 eV Total energy + Delta-G solvation = -3705.212562 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.80501 -41.26523 -38.25308 -37.76737 -37.56632 -35.42118 -35.35415 -33.48180 -32.67781 -32.11948 -28.42830 -27.87356 -26.99204 -25.47938 -23.47883 -22.57754 -22.12841 -21.07617 -20.13477 -18.77850 -18.17373 -17.60234 -17.42600 -16.95503 -16.87277 -16.50154 -16.07847 -15.52164 -15.17341 -14.94745 -14.73676 -14.62366 -14.49546 -14.37521 -14.25110 -14.08275 -13.92464 -13.81193 -13.56035 -13.11754 -13.10291 -13.01942 -12.93992 -12.86379 -12.64327 -12.57254 -12.52165 -11.86011 -11.49760 -11.39922 -11.35102 -11.24279 -10.59105 -9.82340 -9.01279 -8.24033 -6.37828 -0.66533 0.20685 0.99707 1.34171 1.42832 1.46071 1.52187 1.57982 1.58450 1.79165 1.96313 2.21161 2.43318 2.58828 2.68600 2.96702 3.10450 3.50726 3.65825 3.82517 3.93497 4.08612 4.32733 4.32913 4.34153 4.42540 4.50341 4.65423 4.71600 4.77634 4.91548 4.94024 5.07926 5.25444 5.30449 5.35723 5.49148 5.57871 5.63453 5.77641 5.92060 6.08623 6.21259 6.48028 6.75900 6.81075 7.32291 8.88994 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.026570 B = 0.002290 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.565457 B =12221.993229 C =13176.151904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.176 3.824 3 C -0.232 4.232 4 C 0.181 3.819 5 C -0.170 4.170 6 C 0.285 3.715 7 N -0.470 5.470 8 C 0.521 3.479 9 O -0.523 6.523 10 O -0.375 6.375 11 C 0.093 3.907 12 C 0.026 3.974 13 C -0.544 4.544 14 H 0.073 0.927 15 C 0.000 4.000 16 N -0.933 5.933 17 Si 0.978 3.022 18 H -0.269 1.269 19 H -0.283 1.283 20 H -0.258 1.258 21 C -0.089 4.089 22 C 0.031 3.969 23 C 0.296 3.704 24 N -0.444 5.444 25 N -0.402 5.402 26 C 0.049 3.951 27 H 0.117 0.883 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.202 0.798 31 H 0.069 0.931 32 H 0.070 0.930 33 H -0.001 1.001 34 H -0.001 1.001 35 H 0.266 0.734 36 H 0.134 0.866 37 H 0.101 0.899 38 H 0.136 0.864 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.518 -29.334 -5.226 35.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.049 3.951 3 C -0.237 4.237 4 C 0.158 3.842 5 C -0.176 4.176 6 C -0.027 4.027 7 N -0.147 5.147 8 C 0.368 3.632 9 O -0.415 6.415 10 O -0.291 6.291 11 C 0.020 3.980 12 C -0.011 4.011 13 C -0.582 4.582 14 H 0.091 0.909 15 C -0.199 4.199 16 N -0.572 5.572 17 Si 0.801 3.199 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.182 1.182 21 C -0.117 4.117 22 C -0.078 4.078 23 C -0.018 4.018 24 N -0.121 5.121 25 N -0.074 5.074 26 C -0.090 4.090 27 H 0.135 0.865 28 H 0.122 0.878 29 H 0.129 0.871 30 H 0.219 0.781 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.018 0.982 34 H 0.017 0.983 35 H 0.075 0.925 36 H 0.152 0.848 37 H 0.119 0.881 38 H 0.155 0.845 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.743 -31.018 -4.657 35.095 hybrid contribution 0.398 1.573 0.021 1.623 sum -15.345 -29.445 -4.636 33.526 Atomic orbital electron populations 1.21028 0.81964 1.07004 1.06499 1.21811 0.95576 0.83174 0.94534 1.18375 0.91815 0.92259 1.21241 1.22756 0.98077 0.86949 0.76427 1.16978 0.90790 0.90094 1.19744 1.25530 0.92697 0.92025 0.92464 1.81203 1.12056 1.09674 1.11803 1.20634 0.82298 0.86186 0.74126 1.90826 1.21881 1.84483 1.44317 1.86637 1.46666 1.18178 1.77659 1.23187 0.98404 0.75062 1.01305 1.19009 0.93514 0.92882 0.95693 1.21404 1.01868 0.90819 1.44122 0.90904 1.26069 0.94769 1.04733 0.94279 1.70131 1.09273 1.33662 1.44113 0.85260 0.77974 0.77494 0.79192 1.19471 1.20825 1.18155 1.21719 0.98562 0.92135 0.99246 1.14958 0.80870 0.89697 1.22288 1.24466 0.92662 0.92289 0.92415 1.81332 1.10072 1.08900 1.11840 1.43913 1.02920 1.08919 1.51687 1.22735 1.03899 0.76237 1.06160 0.86459 0.87833 0.87133 0.78073 0.91289 0.91121 0.98210 0.98300 0.92506 0.84801 0.88062 0.84534 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.46 9.65 71.24 0.69 1.15 16 2 C 0.18 0.92 6.95 42.32 0.29 1.22 16 3 C -0.23 -3.00 5.92 -20.18 -0.12 -3.12 16 4 C 0.18 2.55 9.36 24.31 0.23 2.78 16 5 C -0.17 -4.29 5.90 -19.83 -0.12 -4.41 16 6 C 0.29 8.92 11.77 88.33 1.04 9.96 16 7 N -0.47 -16.90 17.32 19.00 0.33 -16.57 16 8 C 0.52 17.17 7.87 70.07 0.55 17.72 16 9 O -0.52 -17.30 16.10 19.51 0.31 -16.98 16 10 O -0.37 -15.70 9.76 -57.55 -0.56 -16.26 16 11 C 0.09 4.19 5.42 71.98 0.39 4.58 16 12 C 0.03 1.46 5.35 29.85 0.16 1.62 16 13 C -0.54 -31.18 9.11 25.60 0.23 -30.95 16 14 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 15 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 16 N -0.93 -57.82 13.29 21.45 0.28 -57.53 16 17 Si 0.98 44.11 29.54 68.60 2.03 46.14 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 21 C -0.09 -1.71 9.29 22.68 0.21 -1.50 16 22 C 0.03 0.49 6.68 38.98 0.26 0.75 16 23 C 0.30 6.04 15.10 88.33 1.33 7.38 16 24 N -0.44 -11.08 18.54 19.01 0.35 -10.73 16 25 N -0.40 -2.88 3.12 -522.72 -1.63 -4.52 16 26 C 0.05 -0.04 10.45 127.77 1.33 1.29 16 27 H 0.12 -0.86 8.14 -2.39 -0.02 -0.88 16 28 H 0.10 -0.83 7.63 -2.39 -0.02 -0.85 16 29 H 0.11 -0.56 7.86 -2.39 -0.02 -0.58 16 30 H 0.20 1.33 7.52 -2.91 -0.02 1.30 16 31 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.07 3.01 8.14 -2.38 -0.02 2.99 16 33 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 34 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 35 H 0.27 15.42 8.31 -92.71 -0.77 14.64 16 36 H 0.13 3.38 5.11 -2.91 -0.01 3.36 16 37 H 0.10 -0.28 8.14 -2.39 -0.02 -0.30 16 38 H 0.14 -1.07 7.56 -2.39 -0.02 -1.09 16 39 H 0.08 0.09 7.74 -2.39 -0.02 0.07 16 Total: -1.00 -84.39 361.55 9.16 -75.23 By element: Atomic # 1 Polarization: -8.79 SS G_CDS: 1.10 Total: -7.69 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 6.95 Total: 8.92 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -0.67 Total: -89.35 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -0.25 Total: -33.24 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -84.39 9.16 -75.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044949653.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.628 kcal (2) G-P(sol) polarization free energy of solvation -84.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds