Wall clock time and date at job start Tue Mar 31 2020 10:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48501 * 109.47029 * 269.99935 * 3 2 1 5 5 H 1.48504 * 109.47187 * 29.99834 * 3 2 1 6 6 H 1.48498 * 109.47091 * 149.99945 * 3 2 1 7 7 C 1.37876 * 119.99847 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99316 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00244 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47097 * 180.02562 * 9 7 2 11 11 O 1.42900 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.35906 * 116.99866 * 179.97438 * 11 10 9 13 13 C 1.38805 * 120.01697 * 359.72733 * 12 11 10 14 14 C 1.38182 * 120.08566 * 179.71943 * 13 12 11 15 15 C 1.38160 * 120.12757 * 0.55239 * 14 13 12 16 16 C 1.38914 * 120.03419 * 359.72590 * 15 14 13 17 17 N 1.39826 * 120.04193 * 179.97438 * 16 15 14 18 18 C 1.34778 * 119.99919 * 213.35826 * 17 16 15 19 19 O 1.21523 * 120.00106 * 5.28152 * 18 17 16 20 20 C 1.48106 * 120.00019 * 185.27499 * 18 17 16 21 21 C 1.39468 * 120.10004 * 180.02562 * 20 18 17 22 22 N 1.32079 * 119.87135 * 180.02562 * 21 20 18 23 23 C 1.32144 * 120.07125 * 0.02562 * 22 21 20 24 24 C 1.38720 * 120.20131 * 359.97438 * 23 22 21 25 25 N 1.31809 * 120.13080 * 359.72133 * 24 23 22 26 26 C 1.38578 * 120.01818 * 179.97438 * 12 11 10 27 27 H 0.97000 * 120.00223 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.46773 * 60.00359 * 9 7 2 29 29 H 1.09000 * 109.47282 * 300.00829 * 9 7 2 30 30 H 1.08996 * 109.47243 * 60.00367 * 10 9 7 31 31 H 1.09004 * 109.47374 * 300.00008 * 10 9 7 32 32 H 1.08002 * 119.95953 * 359.97438 * 13 12 11 33 33 H 1.08001 * 119.93546 * 180.25434 * 14 13 12 34 34 H 1.07995 * 119.98407 * 179.69909 * 15 14 13 35 35 H 0.97002 * 120.00336 * 33.36196 * 17 16 15 36 36 H 1.07993 * 120.06273 * 359.97438 * 21 20 18 37 37 H 1.08004 * 119.89421 * 180.02562 * 23 22 21 38 38 H 1.08001 * 119.93240 * 180.02562 * 24 23 22 39 39 H 1.08001 * 120.06282 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 8 1.5308 -4.8996 -0.0011 12 6 2.2710 -6.0394 -0.0018 13 6 3.6572 -5.9671 -0.0075 14 6 4.4112 -7.1250 -0.0023 15 6 3.7883 -8.3582 -0.0029 16 6 2.4014 -8.4366 -0.0029 17 7 1.7707 -9.6846 -0.0040 18 6 0.5967 -9.8457 -0.6460 19 8 0.1336 -8.9347 -1.3036 20 6 -0.1291 -11.1332 -0.5502 21 6 -1.3439 -11.3025 -1.2141 22 7 -1.9875 -12.4524 -1.1251 23 6 -1.4819 -13.4405 -0.4081 24 6 -0.2738 -13.2754 0.2535 25 7 0.3782 -12.1333 0.1653 26 6 1.6423 -7.2743 -0.0018 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5567 -0.8904 29 1 0.6246 -2.5571 0.8896 30 1 2.8719 -3.6043 0.8894 31 1 2.8720 -3.6043 -0.8905 32 1 4.1471 -5.0046 -0.0119 33 1 5.4896 -7.0660 -0.0026 34 1 4.3799 -9.2617 -0.0037 35 1 2.1782 -10.4343 0.4572 36 1 -1.7578 -10.4946 -1.7991 37 1 -2.0104 -14.3797 -0.3376 38 1 0.1357 -14.0860 0.8380 39 1 0.5639 -7.3324 -0.0010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055568441.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:03:39 Heat of formation + Delta-G solvation = 3.369006 kcal Electronic energy + Delta-G solvation = -23751.224106 eV Core-core repulsion = 20045.533091 eV Total energy + Delta-G solvation = -3705.691015 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.81547 -40.46382 -39.20372 -37.21350 -35.20225 -34.44846 -33.33484 -32.31537 -30.87040 -29.63428 -29.04206 -26.08072 -25.15569 -24.94054 -23.18271 -22.17697 -21.40238 -20.29698 -18.87074 -18.39628 -17.73294 -17.26552 -16.36076 -16.17284 -15.90333 -15.76644 -15.42085 -15.31287 -15.17261 -14.60584 -14.56376 -14.26441 -13.50251 -13.32961 -13.04119 -12.75024 -12.31071 -12.29460 -11.89660 -11.81696 -11.71081 -11.45844 -10.94929 -10.89390 -10.64802 -10.49228 -10.25348 -10.02684 -9.81858 -9.69018 -9.62936 -9.27642 -8.43535 -8.29185 -7.83790 -6.07935 -4.12639 -0.19320 0.45610 1.33554 1.62138 2.34669 2.53586 3.24211 3.29043 3.34237 3.35835 3.37998 3.63650 3.80090 3.89461 3.96072 4.27105 4.43294 4.55915 4.64389 4.96750 4.98241 5.17703 5.28303 5.34834 5.43583 5.63854 5.68092 5.80981 6.04034 6.06184 6.21664 6.31872 6.49085 6.52558 6.58807 6.74458 6.92014 6.99197 7.17782 7.53303 7.67273 7.72753 7.83126 8.08261 8.26113 8.92986 9.51443 11.03635 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.023734 B = 0.002259 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.455037 B =12391.829771 C =13417.939043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.065 3.935 11 O -0.312 6.312 12 C 0.165 3.835 13 C -0.223 4.223 14 C -0.061 4.061 15 C -0.192 4.192 16 C 0.174 3.826 17 N -0.650 5.650 18 C 0.572 3.428 19 O -0.494 6.494 20 C 0.030 3.970 21 C 0.115 3.885 22 N -0.438 5.438 23 C 0.075 3.925 24 C 0.050 3.950 25 N -0.413 5.413 26 C -0.163 4.163 27 H 0.263 0.737 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.133 0.867 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.420 0.580 36 H 0.187 0.813 37 H 0.178 0.822 38 H 0.180 0.820 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.300 -29.644 1.256 29.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.009 4.009 11 O -0.224 6.224 12 C 0.117 3.883 13 C -0.242 4.242 14 C -0.079 4.079 15 C -0.212 4.212 16 C 0.081 3.919 17 N -0.295 5.295 18 C 0.357 3.643 19 O -0.366 6.366 20 C -0.111 4.111 21 C -0.044 4.044 22 N -0.152 5.152 23 C -0.086 4.086 24 C -0.112 4.112 25 N -0.131 5.131 26 C -0.184 4.184 27 H 0.073 0.927 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.151 0.849 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.257 0.743 36 H 0.204 0.796 37 H 0.195 0.805 38 H 0.197 0.803 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.546 -28.799 0.760 28.922 hybrid contribution 0.868 0.464 0.293 1.027 sum 3.414 -28.335 1.053 28.560 Atomic orbital electron populations 1.69981 1.06097 1.26953 1.49686 1.25000 0.94912 0.99391 0.94958 0.86482 0.79710 0.82943 0.78207 1.20500 1.21074 1.19773 1.20966 0.93035 0.90192 1.52216 0.92344 1.19132 0.94201 0.88983 0.98950 1.23361 0.97114 0.80717 0.99738 1.86197 1.36495 1.13127 1.86631 1.18928 0.89871 0.87273 0.92225 1.21416 0.93079 1.00025 1.09688 1.20674 0.99467 0.91162 0.96627 1.20623 0.91927 0.98408 1.10264 1.17261 0.91161 0.83770 0.99749 1.43180 1.21879 1.11693 1.52757 1.17718 0.81054 0.85944 0.79616 1.90916 1.66284 1.40666 1.38771 1.22080 0.95996 0.94620 0.98420 1.23943 0.90527 0.95669 0.94276 1.68689 1.31822 0.99999 1.14681 1.24189 0.94063 0.98846 0.91535 1.23877 0.93446 0.95531 0.98377 1.68323 1.32317 0.99914 1.12569 1.20253 1.01110 0.88652 1.08372 0.92711 0.95318 0.95380 0.93008 0.92999 0.84921 0.85544 0.85939 0.74271 0.79635 0.80478 0.80328 0.84234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.53 -14.82 9.11 -34.44 -0.31 -15.13 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 9 C 0.02 0.65 5.34 -27.89 -0.15 0.51 16 10 C 0.06 1.42 4.68 37.16 0.17 1.59 16 11 O -0.31 -6.72 10.13 -19.45 -0.20 -6.92 16 12 C 0.17 3.03 6.68 -39.25 -0.26 2.76 16 13 C -0.22 -3.49 9.04 -39.39 -0.36 -3.85 16 14 C -0.06 -0.77 10.03 -39.63 -0.40 -1.16 16 15 C -0.19 -2.29 9.96 -39.36 -0.39 -2.69 16 16 C 0.17 2.40 6.27 -83.75 -0.53 1.87 16 17 N -0.65 -7.32 5.32 -10.66 -0.06 -7.38 16 18 C 0.57 7.09 7.55 -12.21 -0.09 7.00 16 19 O -0.49 -7.79 14.03 5.35 0.08 -7.72 16 20 C 0.03 0.29 6.75 -82.85 -0.56 -0.26 16 21 C 0.12 1.08 10.77 -16.99 -0.18 0.90 16 22 N -0.44 -3.71 10.49 -12.70 -0.13 -3.84 16 23 C 0.07 0.39 11.23 -17.24 -0.19 0.19 16 24 C 0.05 0.25 11.22 -17.38 -0.20 0.06 16 25 N -0.41 -3.30 9.72 -9.62 -0.09 -3.39 16 26 C -0.16 -2.77 8.59 -39.24 -0.34 -3.11 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 1.06 7.67 -51.93 -0.40 0.66 16 31 H 0.05 1.08 7.65 -51.93 -0.40 0.68 16 32 H 0.13 2.01 6.29 -52.49 -0.33 1.68 16 33 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.42 3.56 8.18 -40.82 -0.33 3.22 16 36 H 0.19 1.66 7.65 -52.49 -0.40 1.26 16 37 H 0.18 0.25 8.06 -52.48 -0.42 -0.17 16 38 H 0.18 0.21 8.06 -52.49 -0.42 -0.22 16 39 H 0.14 2.54 6.42 -52.49 -0.34 2.20 16 LS Contribution 344.96 15.07 5.20 5.20 Total: -1.00 -34.36 344.96 -7.65 -42.00 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -4.28 Total: 1.38 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -3.88 Total: -9.71 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.45 Total: -40.67 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.12 Total: -14.64 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.36 -7.65 -42.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055568441.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.372 kcal (2) G-P(sol) polarization free energy of solvation -34.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds