Wall clock time and date at job start Tue Mar 31 2020 10:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48501 * 109.47029 * 269.99935 * 3 2 1 5 5 H 1.48504 * 109.47187 * 29.99834 * 3 2 1 6 6 H 1.48498 * 109.47091 * 149.99945 * 3 2 1 7 7 C 1.37876 * 119.99847 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99316 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00244 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47097 * 180.02562 * 9 7 2 11 11 O 1.42900 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.35906 * 116.99866 * 179.97438 * 11 10 9 13 13 C 1.38805 * 120.01697 * 359.72733 * 12 11 10 14 14 C 1.38182 * 120.08566 * 179.71943 * 13 12 11 15 15 C 1.38160 * 120.12757 * 0.55239 * 14 13 12 16 16 C 1.38914 * 120.03419 * 359.72590 * 15 14 13 17 17 N 1.39826 * 120.04193 * 179.97438 * 16 15 14 18 18 C 1.34778 * 119.99919 * 213.35826 * 17 16 15 19 19 O 1.21523 * 120.00106 * 5.28152 * 18 17 16 20 20 C 1.48106 * 120.00019 * 185.27499 * 18 17 16 21 21 C 1.39468 * 120.10004 * 180.02562 * 20 18 17 22 22 N 1.32079 * 119.87135 * 180.02562 * 21 20 18 23 23 C 1.32144 * 120.07125 * 0.02562 * 22 21 20 24 24 C 1.38720 * 120.20131 * 359.97438 * 23 22 21 25 25 N 1.31809 * 120.13080 * 359.72133 * 24 23 22 26 26 C 1.38578 * 120.01818 * 179.97438 * 12 11 10 27 27 H 0.97000 * 120.00223 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.46773 * 60.00359 * 9 7 2 29 29 H 1.09000 * 109.47282 * 300.00829 * 9 7 2 30 30 H 1.08996 * 109.47243 * 60.00367 * 10 9 7 31 31 H 1.09004 * 109.47374 * 300.00008 * 10 9 7 32 32 H 1.08002 * 119.95953 * 359.97438 * 13 12 11 33 33 H 1.08001 * 119.93546 * 180.25434 * 14 13 12 34 34 H 1.07995 * 119.98407 * 179.69909 * 15 14 13 35 35 H 0.97002 * 120.00336 * 33.36196 * 17 16 15 36 36 H 1.07993 * 120.06273 * 359.97438 * 21 20 18 37 37 H 1.08004 * 119.89421 * 180.02562 * 23 22 21 38 38 H 1.08001 * 119.93240 * 180.02562 * 24 23 22 39 39 H 1.08001 * 120.06282 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 8 1.5308 -4.8996 -0.0011 12 6 2.2710 -6.0394 -0.0018 13 6 3.6572 -5.9671 -0.0075 14 6 4.4112 -7.1250 -0.0023 15 6 3.7883 -8.3582 -0.0029 16 6 2.4014 -8.4366 -0.0029 17 7 1.7707 -9.6846 -0.0040 18 6 0.5967 -9.8457 -0.6460 19 8 0.1336 -8.9347 -1.3036 20 6 -0.1291 -11.1332 -0.5502 21 6 -1.3439 -11.3025 -1.2141 22 7 -1.9875 -12.4524 -1.1251 23 6 -1.4819 -13.4405 -0.4081 24 6 -0.2738 -13.2754 0.2535 25 7 0.3782 -12.1333 0.1653 26 6 1.6423 -7.2743 -0.0018 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5567 -0.8904 29 1 0.6246 -2.5571 0.8896 30 1 2.8719 -3.6043 0.8894 31 1 2.8720 -3.6043 -0.8905 32 1 4.1471 -5.0046 -0.0119 33 1 5.4896 -7.0660 -0.0026 34 1 4.3799 -9.2617 -0.0037 35 1 2.1782 -10.4343 0.4572 36 1 -1.7578 -10.4946 -1.7991 37 1 -2.0104 -14.3797 -0.3376 38 1 0.1357 -14.0860 0.8380 39 1 0.5639 -7.3324 -0.0010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055568441.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:03:38 Heat of formation + Delta-G solvation = -21.358007 kcal Electronic energy + Delta-G solvation = -23752.296350 eV Core-core repulsion = 20045.533091 eV Total energy + Delta-G solvation = -3706.763259 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.49737 -41.48276 -40.46376 -38.50626 -36.07230 -35.50588 -35.20631 -32.93974 -32.60682 -31.03092 -30.27145 -27.10509 -26.67326 -25.68389 -24.30172 -23.59615 -22.73992 -21.62846 -19.94564 -19.32272 -18.67846 -18.23081 -17.82242 -17.26720 -17.01911 -16.89642 -16.82873 -16.60070 -16.43754 -15.98089 -15.40375 -15.27256 -14.51976 -14.49104 -14.33754 -14.29728 -13.93741 -13.38780 -13.27057 -12.88462 -12.77238 -12.66655 -12.58686 -12.48084 -12.30126 -11.85784 -11.65521 -11.52245 -11.39917 -11.22846 -10.63101 -10.60401 -10.30121 -9.48507 -9.06509 -8.27014 -6.41307 -0.82972 -0.08876 0.22814 0.45348 1.40460 1.43501 1.48106 1.54575 1.63692 2.25859 2.48260 2.60610 2.78376 2.80605 3.07186 3.12255 3.29879 3.63717 3.88381 4.01419 4.14160 4.18004 4.22182 4.26637 4.27671 4.40939 4.48872 4.53278 4.64961 4.73574 5.17356 5.20030 5.23813 5.30103 5.37471 5.44615 5.48157 5.66796 5.83518 5.93956 6.05709 6.17845 6.53590 6.54363 6.73707 6.82740 7.28892 8.86401 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.023734 B = 0.002259 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.455037 B =12391.829771 C =13417.939043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.980 3.020 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.256 1.256 7 C -0.544 4.544 8 H 0.074 0.926 9 C 0.026 3.974 10 C 0.084 3.916 11 O -0.345 6.345 12 C 0.126 3.874 13 C -0.230 4.230 14 C -0.050 4.050 15 C -0.171 4.171 16 C 0.174 3.826 17 N -0.638 5.638 18 C 0.570 3.430 19 O -0.540 6.540 20 C 0.010 3.990 21 C 0.102 3.898 22 N -0.462 5.462 23 C 0.090 3.910 24 C 0.064 3.936 25 N -0.421 5.421 26 C -0.185 4.185 27 H 0.267 0.733 28 H -0.006 1.006 29 H -0.003 1.003 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.136 0.864 33 H 0.169 0.831 34 H 0.168 0.832 35 H 0.435 0.565 36 H 0.173 0.827 37 H 0.222 0.778 38 H 0.227 0.773 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.454 -32.603 2.094 33.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.200 4.200 3 Si 0.803 3.197 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.180 1.180 7 C -0.582 4.582 8 H 0.092 0.908 9 C -0.011 4.011 10 C 0.010 3.990 11 O -0.259 6.259 12 C 0.080 3.920 13 C -0.249 4.249 14 C -0.068 4.068 15 C -0.191 4.191 16 C 0.079 3.921 17 N -0.284 5.284 18 C 0.357 3.643 19 O -0.416 6.416 20 C -0.128 4.128 21 C -0.056 4.056 22 N -0.176 5.176 23 C -0.072 4.072 24 C -0.101 4.101 25 N -0.139 5.139 26 C -0.206 4.206 27 H 0.075 0.925 28 H 0.013 0.987 29 H 0.015 0.985 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.154 0.846 33 H 0.187 0.813 34 H 0.185 0.815 35 H 0.276 0.724 36 H 0.191 0.809 37 H 0.239 0.761 38 H 0.243 0.757 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.733 -31.778 1.602 32.331 hybrid contribution -0.173 1.034 0.076 1.051 sum 5.560 -30.744 1.678 31.288 Atomic orbital electron populations 1.70141 1.08189 1.28245 1.50661 1.26115 0.95855 1.03917 0.94153 0.85230 0.78583 0.77245 0.78662 1.19559 1.20721 1.18025 1.21397 0.93924 0.90792 1.52069 0.90759 1.18985 0.94632 0.91664 0.95801 1.22915 0.95387 0.79844 1.00857 1.86101 1.37803 1.13929 1.88089 1.19210 0.91249 0.86188 0.95362 1.21572 0.91794 1.01667 1.09880 1.21160 1.01330 0.89992 0.94321 1.21128 0.90955 1.00038 1.06958 1.17415 0.92104 0.83586 0.98963 1.43099 1.21580 1.11259 1.52429 1.18171 0.80970 0.86492 0.78685 1.90893 1.67336 1.42533 1.40836 1.21582 0.96279 0.94328 1.00631 1.23787 0.90812 0.96236 0.94774 1.68723 1.32433 1.00319 1.16143 1.25018 0.93975 0.99162 0.89082 1.24714 0.92839 0.95201 0.97302 1.68316 1.32842 1.00434 1.12340 1.20219 1.00274 0.89852 1.10281 0.92464 0.98721 0.98496 0.91567 0.91904 0.84627 0.81324 0.81476 0.72405 0.80948 0.76134 0.75652 0.86978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.37 13.29 21.45 0.28 -58.09 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.98 44.26 29.54 68.60 2.03 46.29 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 7 C -0.54 -31.43 9.11 25.60 0.23 -31.19 16 8 H 0.07 3.96 7.74 -2.91 -0.02 3.93 16 9 C 0.03 1.51 5.34 29.85 0.16 1.67 16 10 C 0.08 3.86 4.68 71.98 0.34 4.20 16 11 O -0.34 -16.06 10.13 -92.50 -0.94 -17.00 16 12 C 0.13 4.86 6.68 22.49 0.15 5.01 16 13 C -0.23 -7.05 9.04 22.39 0.20 -6.84 16 14 C -0.05 -1.09 10.03 22.24 0.22 -0.87 16 15 C -0.17 -3.52 9.96 22.41 0.22 -3.29 16 16 C 0.17 4.71 6.27 38.17 0.24 4.95 16 17 N -0.64 -14.08 5.32 -305.93 -1.63 -15.71 16 18 C 0.57 14.90 7.55 86.86 0.66 15.55 16 19 O -0.54 -18.81 14.03 -3.79 -0.05 -18.86 16 20 C 0.01 0.20 6.75 41.88 0.28 0.49 16 21 C 0.10 2.02 10.77 84.95 0.92 2.93 16 22 N -0.46 -7.43 10.49 -194.11 -2.04 -9.46 16 23 C 0.09 0.64 11.23 84.76 0.95 1.59 16 24 C 0.06 0.40 11.22 84.81 0.95 1.35 16 25 N -0.42 -5.89 9.72 -184.34 -1.79 -7.68 16 26 C -0.19 -6.72 8.59 22.49 0.19 -6.52 16 27 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 28 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 29 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.07 2.79 7.67 -2.39 -0.02 2.77 16 31 H 0.06 2.69 7.65 -2.38 -0.02 2.67 16 32 H 0.14 4.00 6.29 -2.91 -0.02 3.98 16 33 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 34 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.44 6.55 8.18 -92.71 -0.76 5.79 16 36 H 0.17 3.64 7.65 -2.91 -0.02 3.62 16 37 H 0.22 -0.49 8.06 -2.91 -0.02 -0.51 16 38 H 0.23 -0.80 8.06 -2.91 -0.02 -0.83 16 39 H 0.11 4.59 6.42 -2.91 -0.02 4.57 16 Total: -1.00 -82.05 344.96 2.38 -79.66 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.34 Total: 11.50 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: 6.18 Total: -10.65 kcal Atomic # 7 Polarization: -85.77 SS G_CDS: -5.17 Total: -90.94 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -0.99 Total: -35.86 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -82.05 2.38 -79.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055568441.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.305 kcal (2) G-P(sol) polarization free energy of solvation -82.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds