Wall clock time and date at job start Tue Mar 31 2020 10:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00386 * 2 1 4 4 H 1.48496 * 109.47382 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47079 * 299.99818 * 3 2 1 6 6 H 1.48500 * 109.47100 * 59.99719 * 3 2 1 7 7 C 1.37879 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00429 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99968 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46977 * 179.97438 * 9 7 2 11 11 C 1.46503 * 120.00123 * 359.70252 * 10 9 7 12 12 C 1.50694 * 109.47211 * 270.00070 * 11 10 9 13 13 C 1.38673 * 120.41737 * 269.71960 * 12 11 10 14 14 C 1.38636 * 118.41981 * 179.78562 * 13 12 11 15 15 C 1.38226 * 119.16090 * 0.51308 * 14 13 12 16 16 N 1.31856 * 120.75849 * 359.72534 * 15 14 13 17 17 C 1.31886 * 121.73047 * 0.02562 * 16 15 14 18 18 C 1.34775 * 120.00231 * 179.70300 * 10 9 7 19 19 O 1.21538 * 120.00235 * 184.81675 * 18 10 9 20 20 C 1.47974 * 119.99866 * 4.81477 * 18 10 9 21 21 C 1.39433 * 119.73914 * 115.52464 * 20 18 10 22 22 C 1.38460 * 119.06277 * 179.97438 * 21 20 18 23 23 C 1.38727 * 118.53660 * 0.02562 * 22 21 20 24 24 C 1.38405 * 119.39091 * 359.97438 * 23 22 21 25 25 N 1.31720 * 120.90160 * 0.02562 * 24 23 22 26 26 O 1.41603 * 119.20678 * 179.97438 * 25 24 23 27 27 H 0.96998 * 119.99544 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47205 * 59.99974 * 9 7 2 29 29 H 1.09001 * 109.46920 * 299.99612 * 9 7 2 30 30 H 1.09006 * 109.47109 * 30.00000 * 11 10 9 31 31 H 1.09005 * 109.47413 * 149.99991 * 11 10 9 32 32 H 1.08000 * 120.79221 * 0.02562 * 13 12 11 33 33 H 1.07994 * 120.41612 * 180.22239 * 14 13 12 34 34 H 1.07992 * 119.62073 * 179.75647 * 15 14 13 35 35 H 1.08005 * 119.61357 * 179.97438 * 17 16 15 36 36 H 1.08000 * 120.46460 * 359.97438 * 21 20 18 37 37 H 1.08001 * 120.73085 * 180.02562 * 22 21 20 38 38 H 1.07999 * 120.30596 * 179.72583 * 23 22 21 39 39 H 1.08002 * 119.54908 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8906 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 3.6432 -3.3451 -0.0061 12 6 4.1315 -3.2581 -1.4290 13 6 4.5829 -4.3923 -2.0870 14 6 5.0185 -4.2657 -3.3970 15 6 4.9988 -3.0201 -3.9960 16 7 4.5673 -1.9621 -3.3378 17 6 4.1410 -2.0462 -2.0926 18 6 1.7537 -4.8834 0.0066 19 8 2.5403 -5.8057 0.0950 20 6 0.3027 -5.1556 -0.0943 21 6 -0.1988 -5.8296 -1.2072 22 6 -1.5587 -6.0774 -1.2870 23 6 -2.3734 -5.6428 -0.2517 24 6 -1.8092 -4.9794 0.8240 25 7 -0.5121 -4.7559 0.8762 26 8 0.0270 -4.0732 1.9935 27 1 -0.4849 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 3.8399 -2.4020 0.5039 31 1 4.1651 -4.1520 0.5085 32 1 4.5912 -5.3522 -1.5920 33 1 5.3733 -5.1285 -3.9411 34 1 5.3401 -2.9123 -5.0148 35 1 3.7953 -1.1574 -1.5857 36 1 0.4642 -6.1538 -1.9957 37 1 -1.9760 -6.5976 -2.1365 38 1 -3.4387 -5.8170 -0.2866 39 1 -2.4411 -4.6395 1.6312 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063484979.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:41 Heat of formation + Delta-G solvation = 86.175801 kcal Electronic energy + Delta-G solvation = -26241.372510 eV Core-core repulsion = 22539.272266 eV Total energy + Delta-G solvation = -3702.100243 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.29524 -39.87655 -38.61604 -35.52654 -34.47675 -32.81776 -32.29059 -31.74233 -31.02513 -29.56360 -27.45195 -26.72980 -24.51165 -24.05567 -23.07908 -22.74201 -21.79449 -19.64500 -17.58630 -17.32825 -16.83773 -16.75702 -16.45988 -15.79486 -15.50662 -15.21398 -14.93880 -14.80220 -14.76494 -14.36638 -13.97607 -13.45219 -13.14178 -12.77120 -12.60598 -12.45922 -12.24079 -11.98884 -11.90818 -11.52097 -11.13052 -11.02180 -10.85737 -10.83639 -10.17481 -9.71583 -9.54777 -9.47131 -9.23821 -8.96381 -8.88215 -8.68728 -8.55356 -8.21398 -7.59293 -6.18106 -4.21531 0.49350 0.71912 1.48502 1.68536 2.44362 3.08546 3.25651 3.28241 3.33684 3.34699 3.63201 4.27059 4.31972 4.47793 4.56816 4.59584 4.72040 4.84910 4.88365 5.16468 5.19767 5.33995 5.37357 5.40399 5.51951 5.62646 5.73232 5.79429 5.84525 6.04496 6.30064 6.34831 6.48175 6.75007 6.82909 6.87330 7.15594 7.20709 7.29156 7.60144 7.72440 7.99939 8.33906 8.41314 8.53097 8.83319 9.41824 10.92674 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.009840 B = 0.006830 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.888195 B = 4098.535802 C = 6017.824708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.069 3.931 3 Si 0.893 3.107 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.543 4.543 8 H 0.077 0.923 9 C 0.214 3.786 10 N -0.551 5.551 11 C 0.153 3.847 12 C -0.143 4.143 13 C -0.064 4.064 14 C -0.188 4.188 15 C 0.088 3.912 16 N -0.492 5.492 17 C 0.125 3.875 18 C 0.567 3.433 19 O -0.553 6.553 20 C 0.080 3.920 21 C -0.086 4.086 22 C -0.087 4.087 23 C -0.115 4.115 24 C 0.071 3.929 25 N -0.096 5.096 26 O -0.503 6.503 27 H 0.264 0.736 28 H 0.011 0.989 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.134 0.866 33 H 0.127 0.873 34 H 0.147 0.853 35 H 0.175 0.825 36 H 0.161 0.839 37 H 0.155 0.845 38 H 0.163 0.837 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.971 -11.892 -6.828 13.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.580 4.580 8 H 0.094 0.906 9 C 0.096 3.904 10 N -0.278 5.278 11 C 0.030 3.970 12 C -0.147 4.147 13 C -0.090 4.090 14 C -0.208 4.208 15 C -0.069 4.069 16 N -0.200 5.200 17 C -0.031 4.031 18 C 0.351 3.649 19 O -0.434 6.434 20 C -0.049 4.049 21 C -0.105 4.105 22 C -0.113 4.113 23 C -0.134 4.134 24 C -0.075 4.075 25 N 0.226 4.774 26 O -0.561 6.561 27 H 0.074 0.926 28 H 0.029 0.971 29 H 0.100 0.900 30 H 0.132 0.868 31 H 0.099 0.901 32 H 0.152 0.848 33 H 0.145 0.855 34 H 0.164 0.836 35 H 0.192 0.808 36 H 0.179 0.821 37 H 0.173 0.827 38 H 0.181 0.819 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -1.547 -11.164 -6.853 13.191 hybrid contribution 0.114 0.238 0.405 0.484 sum -1.433 -10.926 -6.448 12.768 Atomic orbital electron populations 1.69962 1.06107 1.27052 1.48890 1.24896 0.94862 0.99210 0.94535 0.86509 0.80198 0.83419 0.77850 1.19248 1.20703 1.20718 1.21419 0.93469 0.90022 1.53117 0.90581 1.20051 0.88533 0.82527 0.99315 1.48170 1.07429 1.05957 1.66240 1.20355 0.80804 1.04196 0.91650 1.21318 0.99986 0.94455 0.98894 1.21637 0.94446 0.98786 0.94136 1.22022 1.03625 0.98992 0.96180 1.22706 0.96053 0.88627 0.99543 1.67805 1.10485 1.32586 1.09161 1.23425 0.91648 0.98484 0.89592 1.17388 0.85108 0.84128 0.78290 1.90722 1.55330 1.44375 1.52944 1.21265 0.94002 0.99014 0.90627 1.21710 0.96650 0.96006 0.96165 1.21677 0.92668 0.97848 0.99077 1.21897 1.02121 0.96903 0.92483 1.22688 0.85103 0.98547 1.01128 1.43349 1.04238 1.17258 1.12526 1.97652 1.79958 1.60099 1.18427 0.92642 0.97120 0.89953 0.86812 0.90123 0.84822 0.85533 0.83576 0.80799 0.82140 0.82732 0.81927 0.79862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.22 13.29 55.43 0.74 -24.48 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 3 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.54 -14.18 7.27 -34.44 -0.25 -14.43 16 8 H 0.08 1.85 3.24 -52.49 -0.17 1.68 16 9 C 0.21 5.51 4.75 -5.19 -0.02 5.49 16 10 N -0.55 -12.45 2.84 -177.49 -0.50 -12.95 16 11 C 0.15 3.08 5.10 -5.19 -0.03 3.05 16 12 C -0.14 -2.68 5.48 -104.49 -0.57 -3.25 16 13 C -0.06 -1.04 9.86 -39.27 -0.39 -1.42 16 14 C -0.19 -2.67 10.11 -39.44 -0.40 -3.07 16 15 C 0.09 1.34 11.18 -17.55 -0.20 1.14 16 16 N -0.49 -9.19 10.36 -13.26 -0.14 -9.33 16 17 C 0.13 2.47 10.34 -17.55 -0.18 2.28 16 18 C 0.57 12.21 6.51 -12.27 -0.08 12.13 16 19 O -0.55 -12.15 16.55 5.33 0.09 -12.06 16 20 C 0.08 1.49 5.44 -82.98 -0.45 1.04 16 21 C -0.09 -1.13 9.83 -39.05 -0.38 -1.52 16 22 C -0.09 -0.80 10.16 -39.32 -0.40 -1.20 16 23 C -0.12 -1.06 10.11 -39.34 -0.40 -1.46 16 24 C 0.07 1.00 10.68 -17.54 -0.19 0.81 16 25 N -0.10 -1.89 3.26 -9.79 -0.03 -1.92 16 26 O -0.50 -13.11 16.46 -11.47 -0.19 -13.30 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.01 0.30 8.02 -51.93 -0.42 -0.12 16 29 H 0.08 2.40 5.09 -51.93 -0.26 2.14 16 30 H 0.11 2.34 5.47 -51.93 -0.28 2.06 16 31 H 0.08 1.55 7.31 -51.93 -0.38 1.17 16 32 H 0.13 2.10 7.95 -52.49 -0.42 1.68 16 33 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.18 3.70 5.38 -52.48 -0.28 3.42 16 36 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.18 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 335.01 15.07 5.05 5.05 Total: -1.00 -37.04 335.01 -7.93 -44.97 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -3.89 Total: 6.96 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -4.03 Total: 1.36 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.06 Total: -48.69 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.10 Total: -25.36 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -37.04 -7.93 -44.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063484979.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.146 kcal (2) G-P(sol) polarization free energy of solvation -37.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds