Wall clock time and date at job start Tue Mar 31 2020 10:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00386 * 2 1 4 4 H 1.48496 * 109.47382 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47079 * 299.99818 * 3 2 1 6 6 H 1.48500 * 109.47100 * 59.99719 * 3 2 1 7 7 C 1.37879 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00429 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99968 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46977 * 179.97438 * 9 7 2 11 11 C 1.46503 * 120.00123 * 359.70252 * 10 9 7 12 12 C 1.50694 * 109.47211 * 270.00070 * 11 10 9 13 13 C 1.38673 * 120.41737 * 269.71960 * 12 11 10 14 14 C 1.38636 * 118.41981 * 179.78562 * 13 12 11 15 15 C 1.38226 * 119.16090 * 0.51308 * 14 13 12 16 16 N 1.31856 * 120.75849 * 359.72534 * 15 14 13 17 17 C 1.31886 * 121.73047 * 0.02562 * 16 15 14 18 18 C 1.34775 * 120.00231 * 179.70300 * 10 9 7 19 19 O 1.21538 * 120.00235 * 184.81675 * 18 10 9 20 20 C 1.47974 * 119.99866 * 4.81477 * 18 10 9 21 21 C 1.39433 * 119.73914 * 115.52464 * 20 18 10 22 22 C 1.38460 * 119.06277 * 179.97438 * 21 20 18 23 23 C 1.38727 * 118.53660 * 0.02562 * 22 21 20 24 24 C 1.38405 * 119.39091 * 359.97438 * 23 22 21 25 25 N 1.31720 * 120.90160 * 0.02562 * 24 23 22 26 26 O 1.41603 * 119.20678 * 179.97438 * 25 24 23 27 27 H 0.96998 * 119.99544 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47205 * 59.99974 * 9 7 2 29 29 H 1.09001 * 109.46920 * 299.99612 * 9 7 2 30 30 H 1.09006 * 109.47109 * 30.00000 * 11 10 9 31 31 H 1.09005 * 109.47413 * 149.99991 * 11 10 9 32 32 H 1.08000 * 120.79221 * 0.02562 * 13 12 11 33 33 H 1.07994 * 120.41612 * 180.22239 * 14 13 12 34 34 H 1.07992 * 119.62073 * 179.75647 * 15 14 13 35 35 H 1.08005 * 119.61357 * 179.97438 * 17 16 15 36 36 H 1.08000 * 120.46460 * 359.97438 * 21 20 18 37 37 H 1.08001 * 120.73085 * 180.02562 * 22 21 20 38 38 H 1.07999 * 120.30596 * 179.72583 * 23 22 21 39 39 H 1.08002 * 119.54908 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8906 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 3.6432 -3.3451 -0.0061 12 6 4.1315 -3.2581 -1.4290 13 6 4.5829 -4.3923 -2.0870 14 6 5.0185 -4.2657 -3.3970 15 6 4.9988 -3.0201 -3.9960 16 7 4.5673 -1.9621 -3.3378 17 6 4.1410 -2.0462 -2.0926 18 6 1.7537 -4.8834 0.0066 19 8 2.5403 -5.8057 0.0950 20 6 0.3027 -5.1556 -0.0943 21 6 -0.1988 -5.8296 -1.2072 22 6 -1.5587 -6.0774 -1.2870 23 6 -2.3734 -5.6428 -0.2517 24 6 -1.8092 -4.9794 0.8240 25 7 -0.5121 -4.7559 0.8762 26 8 0.0270 -4.0732 1.9935 27 1 -0.4849 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 3.8399 -2.4020 0.5039 31 1 4.1651 -4.1520 0.5085 32 1 4.5912 -5.3522 -1.5920 33 1 5.3733 -5.1285 -3.9411 34 1 5.3401 -2.9123 -5.0148 35 1 3.7953 -1.1574 -1.5857 36 1 0.4642 -6.1538 -1.9957 37 1 -1.9760 -6.5976 -2.1365 38 1 -3.4387 -5.8170 -0.2866 39 1 -2.4411 -4.6395 1.6312 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063484979.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:41 Heat of formation + Delta-G solvation = 59.025227 kcal Electronic energy + Delta-G solvation = -26242.549847 eV Core-core repulsion = 22539.272266 eV Total energy + Delta-G solvation = -3703.277581 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.54144 -41.25777 -40.14407 -37.25618 -35.60073 -34.71022 -33.77192 -32.99978 -32.34177 -31.02990 -29.45039 -28.18616 -25.82008 -25.15247 -24.63452 -24.42285 -23.15433 -21.10900 -19.05379 -18.76403 -18.40172 -18.11951 -17.77169 -17.26412 -16.98138 -16.69407 -16.43540 -16.20256 -15.89427 -15.76710 -15.39102 -14.93414 -14.58479 -14.28346 -14.23483 -13.90394 -13.85334 -13.44062 -13.04866 -12.88828 -12.83798 -12.80043 -12.56176 -12.10592 -11.98534 -11.39817 -11.19860 -10.77883 -10.71124 -10.63360 -10.54047 -10.36947 -9.92859 -9.88321 -9.40482 -8.27135 -6.35990 -0.59695 -0.29167 0.16385 0.36722 1.07185 1.38537 1.39322 1.50418 1.77518 2.00703 2.23002 2.36704 2.93187 3.08853 3.21456 3.52224 3.59462 3.61405 3.69462 3.89316 3.91671 3.95349 4.10053 4.15689 4.37829 4.47470 4.64529 4.73685 4.78867 4.83509 4.92992 4.95972 5.04180 5.20551 5.22014 5.40969 5.57706 5.63687 5.76598 5.84203 5.87236 5.95397 6.49011 6.66763 6.94283 7.08110 7.31624 8.85440 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.009840 B = 0.006830 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.888195 B = 4098.535802 C = 6017.824708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.017 3.983 3 Si 0.957 3.043 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.281 1.281 7 C -0.549 4.549 8 H 0.089 0.911 9 C 0.243 3.757 10 N -0.562 5.562 11 C 0.153 3.847 12 C -0.155 4.155 13 C -0.066 4.066 14 C -0.166 4.166 15 C 0.089 3.911 16 N -0.515 5.515 17 C 0.104 3.896 18 C 0.560 3.440 19 O -0.567 6.567 20 C 0.035 3.965 21 C -0.085 4.085 22 C -0.050 4.050 23 C -0.082 4.082 24 C 0.057 3.943 25 N -0.125 5.125 26 O -0.598 6.598 27 H 0.265 0.735 28 H -0.014 1.014 29 H 0.046 0.954 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.139 0.861 33 H 0.173 0.827 34 H 0.188 0.812 35 H 0.148 0.852 36 H 0.183 0.817 37 H 0.220 0.780 38 H 0.227 0.773 39 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.835 -14.265 -10.600 17.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.782 3.218 4 H -0.179 1.179 5 H -0.202 1.202 6 H -0.207 1.207 7 C -0.586 4.586 8 H 0.107 0.893 9 C 0.123 3.877 10 N -0.289 5.289 11 C 0.031 3.969 12 C -0.158 4.158 13 C -0.093 4.093 14 C -0.185 4.185 15 C -0.068 4.068 16 N -0.224 5.224 17 C -0.052 4.052 18 C 0.346 3.654 19 O -0.448 6.448 20 C -0.093 4.093 21 C -0.105 4.105 22 C -0.075 4.075 23 C -0.099 4.099 24 C -0.090 4.090 25 N 0.193 4.807 26 O -0.651 6.651 27 H 0.074 0.926 28 H 0.003 0.997 29 H 0.064 0.936 30 H 0.115 0.885 31 H 0.101 0.899 32 H 0.157 0.843 33 H 0.191 0.809 34 H 0.205 0.795 35 H 0.165 0.835 36 H 0.200 0.800 37 H 0.237 0.763 38 H 0.243 0.757 39 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -2.371 -13.531 -10.581 17.340 hybrid contribution 0.242 0.708 1.366 1.557 sum -2.129 -12.824 -9.215 15.934 Atomic orbital electron populations 1.70097 1.07692 1.27871 1.50383 1.25757 0.95632 1.02682 0.94250 0.85505 0.79568 0.79047 0.77722 1.17923 1.20153 1.20698 1.21828 0.94364 0.90444 1.51990 0.89314 1.19401 0.88454 0.83579 0.96278 1.48132 1.07768 1.05909 1.67118 1.20324 0.80006 1.03288 0.93290 1.21094 1.01418 0.95323 0.97944 1.21769 0.94254 0.97960 0.95276 1.22451 1.01053 1.00167 0.94878 1.23425 0.94418 0.88073 1.00876 1.67764 1.11356 1.34610 1.08653 1.23006 0.93658 0.97924 0.90578 1.17923 0.86983 0.83396 0.77112 1.90666 1.56523 1.44267 1.53355 1.21334 0.92790 1.02199 0.92968 1.22222 0.99336 0.94533 0.94375 1.22516 0.90325 0.94657 0.99986 1.22716 1.04882 0.92786 0.89558 1.23468 0.83398 0.98653 1.03487 1.43307 1.06007 1.19290 1.12105 1.97595 1.81311 1.64519 1.21692 0.92593 0.99662 0.93614 0.88465 0.89883 0.84302 0.80936 0.79497 0.83497 0.79980 0.76284 0.75676 0.78974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.45 13.29 21.45 0.28 -55.16 16 2 C 0.02 0.96 5.46 84.65 0.46 1.42 16 3 Si 0.96 44.33 29.54 68.60 2.03 46.35 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.55 -30.66 7.27 25.60 0.19 -30.48 16 8 H 0.09 4.64 3.24 -2.91 -0.01 4.63 16 9 C 0.24 13.56 4.75 85.64 0.41 13.97 16 10 N -0.56 -27.37 2.84 -833.75 -2.37 -29.74 16 11 C 0.15 6.65 5.10 85.63 0.44 7.08 16 12 C -0.15 -5.96 5.48 -19.78 -0.11 -6.07 16 13 C -0.07 -2.08 9.86 22.47 0.22 -1.86 16 14 C -0.17 -4.12 10.11 22.36 0.23 -3.89 16 15 C 0.09 2.44 11.18 84.69 0.95 3.39 16 16 N -0.51 -18.87 10.36 -195.85 -2.03 -20.90 16 17 C 0.10 4.24 10.34 84.67 0.88 5.11 16 18 C 0.56 25.59 6.51 86.82 0.56 26.16 16 19 O -0.57 -25.94 16.55 -3.83 -0.06 -26.00 16 20 C 0.03 1.35 5.44 41.86 0.23 1.58 16 21 C -0.09 -2.04 9.83 22.61 0.22 -1.82 16 22 C -0.05 -0.63 10.16 22.44 0.23 -0.40 16 23 C -0.08 -1.10 10.11 22.43 0.23 -0.87 16 24 C 0.06 1.57 10.68 84.75 0.91 2.48 16 25 N -0.13 -5.26 3.26 -184.89 -0.60 -5.86 16 26 O -0.60 -34.59 16.46 -38.79 -0.64 -35.23 16 27 H 0.27 14.98 8.31 -92.71 -0.77 14.20 16 28 H -0.01 -0.85 8.02 -2.39 -0.02 -0.87 16 29 H 0.05 2.96 5.09 -2.39 -0.01 2.95 16 30 H 0.10 4.40 5.47 -2.38 -0.01 4.38 16 31 H 0.08 3.45 7.31 -2.38 -0.02 3.43 16 32 H 0.14 4.22 7.95 -2.91 -0.02 4.20 16 33 H 0.17 2.73 8.06 -2.91 -0.02 2.70 16 34 H 0.19 3.50 8.06 -2.91 -0.02 3.48 16 35 H 0.15 6.66 5.38 -2.91 -0.02 6.64 16 36 H 0.18 3.44 8.06 -2.91 -0.02 3.42 16 37 H 0.22 0.12 8.06 -2.91 -0.02 0.09 16 38 H 0.23 0.29 8.06 -2.91 -0.02 0.27 16 39 H 0.19 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -94.80 335.01 3.74 -91.06 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 1.10 Total: 19.70 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 6.03 Total: 15.80 kcal Atomic # 7 Polarization: -106.95 SS G_CDS: -4.71 Total: -111.67 kcal Atomic # 8 Polarization: -60.54 SS G_CDS: -0.70 Total: -61.24 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -94.80 3.74 -91.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063484979.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.085 kcal (2) G-P(sol) polarization free energy of solvation -94.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds