Wall clock time and date at job start Tue Mar 31 2020 10:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38769 * 119.90224 * 2 1 4 4 N 1.31774 * 120.12500 * 179.97438 * 3 2 1 5 5 C 1.33031 * 119.92653 * 0.02562 * 4 3 2 6 6 C 1.48150 * 120.09824 * 180.02562 * 5 4 3 7 7 O 1.21512 * 120.00094 * 180.02562 * 6 5 4 8 8 N 1.34771 * 119.99610 * 359.97438 * 6 5 4 9 9 C 1.46505 * 119.99776 * 179.72524 * 8 6 5 10 10 C 1.50701 * 109.47121 * 180.27695 * 9 8 6 11 11 C 1.38298 * 119.92990 * 269.72896 * 10 9 8 12 12 C 1.38111 * 120.06447 * 179.72591 * 11 10 9 13 13 C 1.38881 * 119.92709 * 0.57231 * 12 11 10 14 14 O 1.35753 * 120.06444 * 179.68139 * 13 12 11 15 15 C 1.34828 * 116.99980 * 174.48247 * 14 13 12 16 16 H 1.08007 * 119.99669 * 5.05772 * 15 14 13 17 17 C 1.38650 * 120.00455 * 185.06005 * 15 14 13 18 18 N 1.31553 * 120.00243 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99649 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47145 * 90.00390 * 19 17 15 21 21 H 1.48507 * 109.47211 * 210.00378 * 19 17 15 22 22 H 1.48505 * 109.46969 * 330.00051 * 19 17 15 23 23 C 1.38877 * 119.86357 * 359.70135 * 13 12 11 24 24 C 1.38096 * 119.93329 * 0.02562 * 23 13 12 25 25 C 1.39402 * 119.80658 * 0.27114 * 5 4 3 26 26 N 1.32109 * 119.90564 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.47288 * 90.00430 * 1 2 3 28 28 H 1.09001 * 109.46898 * 209.99903 * 1 2 3 29 29 H 1.08997 * 109.47389 * 329.99932 * 1 2 3 30 30 H 1.08007 * 119.94205 * 359.97438 * 3 2 1 31 31 H 0.96998 * 120.00475 * 0.02562 * 8 6 5 32 32 H 1.09000 * 109.47232 * 300.28185 * 9 8 6 33 33 H 1.09001 * 109.46894 * 60.27844 * 9 8 6 34 34 H 1.07994 * 119.96878 * 359.97438 * 11 10 9 35 35 H 1.07993 * 120.03462 * 180.27464 * 12 11 10 36 36 H 0.97000 * 119.99823 * 179.97438 * 18 17 15 37 37 H 1.08004 * 120.03543 * 179.97438 * 23 13 12 38 38 H 1.08004 * 119.96668 * 180.02562 * 24 23 13 39 39 H 1.08001 * 120.06085 * 179.70157 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.2030 0.0000 4 7 3.5165 1.2081 0.0005 5 6 4.1847 0.0577 0.0005 6 6 5.6662 0.0591 0.0017 7 8 6.2747 -0.9927 0.0012 8 7 6.3389 1.2269 0.0022 9 6 7.8039 1.2282 0.0094 10 6 8.3049 2.6495 0.0153 11 6 8.5456 3.3013 -1.1804 12 6 8.9994 4.6057 -1.1783 13 6 9.2253 5.2588 0.0264 14 8 9.6775 6.5388 0.0318 15 6 9.7667 7.1514 1.2295 16 1 9.5628 6.5991 2.1351 17 6 10.1200 8.4903 1.2988 18 7 10.2075 9.0879 2.4675 19 14 10.4732 9.4453 -0.2673 20 1 9.2166 10.0591 -0.7668 21 1 11.4664 10.5122 0.0168 22 1 11.0174 8.5238 -1.2968 23 6 8.9880 4.5995 1.2255 24 6 8.5290 3.2971 1.2167 25 6 3.4867 -1.1490 -0.0058 26 7 2.1656 -1.1452 0.0005 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.6562 2.1369 -0.0004 31 1 5.8532 2.0664 0.0022 32 1 8.1634 0.7125 0.8998 33 1 8.1721 0.7169 -0.8801 34 1 8.3747 2.7912 -2.1168 35 1 9.1829 5.1157 -2.1124 36 1 10.4550 10.0245 2.5160 37 1 9.1632 5.1045 2.1639 38 1 8.3439 2.7840 2.1489 39 1 4.0250 -2.0853 -0.0106 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067930308.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:11 Heat of formation + Delta-G solvation = 8.653321 kcal Electronic energy + Delta-G solvation = -23724.271929 eV Core-core repulsion = 20018.810059 eV Total energy + Delta-G solvation = -3705.461870 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.63988 -39.66607 -39.10844 -37.06463 -35.15315 -34.45852 -33.24227 -32.48814 -30.47633 -30.28558 -28.80221 -26.19635 -25.02966 -24.76222 -23.58551 -22.20224 -21.01970 -20.64489 -18.56435 -18.07840 -17.95860 -17.32326 -16.34444 -15.90904 -15.83706 -15.40176 -15.19032 -14.74492 -14.52985 -14.12892 -13.95880 -13.87685 -13.42938 -13.33384 -13.11357 -12.91437 -12.85994 -12.72672 -12.28980 -12.06023 -12.04180 -11.57359 -11.51401 -11.01780 -10.86629 -10.78910 -10.52476 -10.23548 -9.65550 -9.50381 -9.49619 -9.08540 -8.96259 -8.39049 -7.49914 -6.50949 -4.17904 0.00805 0.64801 1.91490 2.01839 2.47481 3.01368 3.16540 3.20098 3.34091 3.42296 3.60875 3.68480 3.99514 4.15827 4.34173 4.44209 4.61402 4.73282 4.76306 5.01072 5.03062 5.06362 5.11345 5.17371 5.30732 5.45024 5.53929 5.69552 5.77695 5.88784 6.01889 6.22711 6.32769 6.44398 6.66390 6.72117 6.88150 7.10529 7.17014 7.20475 7.47375 7.49599 7.69707 7.93181 8.01069 8.83589 9.44116 10.56191 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.019990 B = 0.002412 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.329749 B =11603.545561 C =12366.828636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.098 3.902 3 C 0.052 3.948 4 N -0.406 5.406 5 C 0.022 3.978 6 C 0.571 3.429 7 O -0.536 6.536 8 N -0.698 5.698 9 C 0.175 3.825 10 C -0.208 4.208 11 C -0.055 4.055 12 C -0.195 4.195 13 C 0.167 3.833 14 O -0.212 6.212 15 C -0.392 4.392 16 H 0.108 0.892 17 C 0.065 3.935 18 N -0.875 5.875 19 Si 0.906 3.094 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.259 1.259 23 C -0.224 4.224 24 C -0.051 4.051 25 C 0.114 3.886 26 N -0.443 5.443 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.178 0.822 31 H 0.413 0.587 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.281 0.719 37 H 0.135 0.865 38 H 0.111 0.889 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.181 -15.580 -5.459 23.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.043 4.043 3 C -0.111 4.111 4 N -0.123 5.123 5 C -0.118 4.118 6 C 0.354 3.646 7 O -0.413 6.413 8 N -0.349 5.349 9 C 0.054 3.946 10 C -0.209 4.209 11 C -0.073 4.073 12 C -0.214 4.214 13 C 0.114 3.886 14 O -0.116 6.116 15 C -0.467 4.467 16 H 0.125 0.875 17 C -0.139 4.139 18 N -0.512 5.512 19 Si 0.731 3.269 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.183 1.183 23 C -0.243 4.243 24 C -0.070 4.070 25 C -0.045 4.045 26 N -0.159 5.159 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.195 0.805 31 H 0.249 0.751 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.091 0.909 37 H 0.152 0.848 38 H 0.129 0.871 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -15.515 -15.954 -5.502 22.923 hybrid contribution -0.045 1.057 -0.343 1.112 sum -15.559 -14.896 -5.845 22.319 Atomic orbital electron populations 1.20770 0.87173 1.04411 1.03894 1.22693 0.98912 0.89741 0.92972 1.23730 0.90162 0.99555 0.97638 1.68370 1.09247 1.28638 1.06024 1.22255 0.96072 0.90989 1.02520 1.17656 0.84859 0.84577 0.77505 1.90796 1.68373 1.31300 1.50796 1.46215 1.08016 1.08600 1.72029 1.20113 0.77894 0.94307 1.02323 1.19236 1.12061 0.95836 0.93787 1.20534 0.96765 0.93351 0.96692 1.20210 1.09579 0.95561 0.96070 1.19186 0.90954 0.85000 0.93431 1.83575 1.72380 1.21725 1.33963 1.20790 1.48526 0.94623 0.82755 0.87482 1.24489 0.95699 0.95559 0.98200 1.69641 1.45344 1.12626 1.23609 0.86174 0.78732 0.79390 0.82581 1.19795 1.20675 1.18312 1.21275 1.08422 0.95761 0.98831 1.20700 0.95859 0.93849 0.96543 1.23831 0.89881 0.99379 0.91441 1.68486 1.08305 1.29016 1.10054 0.89455 0.89810 0.89718 0.80543 0.75082 0.90992 0.90997 0.86740 0.86328 0.90895 0.84757 0.87068 0.79961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.44 10.19 36.01 0.37 -0.08 16 2 C 0.10 0.78 6.79 -82.28 -0.56 0.22 16 3 C 0.05 0.43 10.88 -17.38 -0.19 0.24 16 4 N -0.41 -4.44 9.71 -9.61 -0.09 -4.53 16 5 C 0.02 0.26 6.75 -82.84 -0.56 -0.30 16 6 C 0.57 7.61 7.81 -12.19 -0.10 7.51 16 7 O -0.54 -8.28 16.35 5.36 0.09 -8.19 16 8 N -0.70 -8.99 5.54 -62.33 -0.35 -9.33 16 9 C 0.18 2.34 5.80 -5.19 -0.03 2.31 16 10 C -0.21 -3.18 5.25 -104.58 -0.55 -3.73 16 11 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 12 C -0.19 -3.63 9.99 -39.39 -0.39 -4.02 16 13 C 0.17 3.67 6.65 -39.11 -0.26 3.41 16 14 O -0.21 -5.39 8.59 0.04 0.00 -5.39 16 15 C -0.39 -10.68 9.95 30.88 0.31 -10.38 16 16 H 0.11 2.98 5.44 -52.48 -0.29 2.69 16 17 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 18 N -0.88 -24.66 13.96 55.48 0.77 -23.88 16 19 Si 0.91 21.06 28.62 -169.99 -4.86 16.20 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 23 C -0.22 -4.56 9.17 -39.40 -0.36 -4.92 16 24 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 25 C 0.11 1.22 10.77 -17.00 -0.18 1.03 16 26 N -0.44 -4.46 10.41 -8.95 -0.09 -4.56 16 27 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.19 8.08 -51.93 -0.42 -0.23 16 30 H 0.18 0.85 8.06 -52.48 -0.42 0.43 16 31 H 0.41 5.20 7.81 -40.82 -0.32 4.88 16 32 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 33 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 34 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 36 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.13 2.90 5.64 -52.48 -0.30 2.60 16 38 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 39 H 0.18 1.73 7.65 -52.49 -0.40 1.32 16 LS Contribution 346.99 15.07 5.23 5.23 Total: -1.00 -30.97 346.99 -6.91 -37.88 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -4.23 Total: 6.09 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -3.37 Total: -9.51 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.24 Total: -42.30 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.09 Total: -13.58 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.86 Total: 16.20 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.97 -6.91 -37.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067930308.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.532 kcal (2) G-P(sol) polarization free energy of solvation -30.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds