Wall clock time and date at job start Tue Mar 31 2020 10:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38769 * 119.90224 * 2 1 4 4 N 1.31774 * 120.12500 * 179.97438 * 3 2 1 5 5 C 1.33031 * 119.92653 * 0.02562 * 4 3 2 6 6 C 1.48150 * 120.09824 * 180.02562 * 5 4 3 7 7 O 1.21512 * 120.00094 * 180.02562 * 6 5 4 8 8 N 1.34771 * 119.99610 * 359.97438 * 6 5 4 9 9 C 1.46505 * 119.99776 * 179.72524 * 8 6 5 10 10 C 1.50701 * 109.47121 * 180.27695 * 9 8 6 11 11 C 1.38298 * 119.92990 * 269.72896 * 10 9 8 12 12 C 1.38111 * 120.06447 * 179.72591 * 11 10 9 13 13 C 1.38881 * 119.92709 * 0.57231 * 12 11 10 14 14 O 1.35753 * 120.06444 * 179.68139 * 13 12 11 15 15 C 1.34828 * 116.99980 * 174.48247 * 14 13 12 16 16 H 1.08007 * 119.99669 * 5.05772 * 15 14 13 17 17 C 1.38650 * 120.00455 * 185.06005 * 15 14 13 18 18 N 1.31553 * 120.00243 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99649 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47145 * 90.00390 * 19 17 15 21 21 H 1.48507 * 109.47211 * 210.00378 * 19 17 15 22 22 H 1.48505 * 109.46969 * 330.00051 * 19 17 15 23 23 C 1.38877 * 119.86357 * 359.70135 * 13 12 11 24 24 C 1.38096 * 119.93329 * 0.02562 * 23 13 12 25 25 C 1.39402 * 119.80658 * 0.27114 * 5 4 3 26 26 N 1.32109 * 119.90564 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.47288 * 90.00430 * 1 2 3 28 28 H 1.09001 * 109.46898 * 209.99903 * 1 2 3 29 29 H 1.08997 * 109.47389 * 329.99932 * 1 2 3 30 30 H 1.08007 * 119.94205 * 359.97438 * 3 2 1 31 31 H 0.96998 * 120.00475 * 0.02562 * 8 6 5 32 32 H 1.09000 * 109.47232 * 300.28185 * 9 8 6 33 33 H 1.09001 * 109.46894 * 60.27844 * 9 8 6 34 34 H 1.07994 * 119.96878 * 359.97438 * 11 10 9 35 35 H 1.07993 * 120.03462 * 180.27464 * 12 11 10 36 36 H 0.97000 * 119.99823 * 179.97438 * 18 17 15 37 37 H 1.08004 * 120.03543 * 179.97438 * 23 13 12 38 38 H 1.08004 * 119.96668 * 180.02562 * 24 23 13 39 39 H 1.08001 * 120.06085 * 179.70157 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.2030 0.0000 4 7 3.5165 1.2081 0.0005 5 6 4.1847 0.0577 0.0005 6 6 5.6662 0.0591 0.0017 7 8 6.2747 -0.9927 0.0012 8 7 6.3389 1.2269 0.0022 9 6 7.8039 1.2282 0.0094 10 6 8.3049 2.6495 0.0153 11 6 8.5456 3.3013 -1.1804 12 6 8.9994 4.6057 -1.1783 13 6 9.2253 5.2588 0.0264 14 8 9.6775 6.5388 0.0318 15 6 9.7667 7.1514 1.2295 16 1 9.5628 6.5991 2.1351 17 6 10.1200 8.4903 1.2988 18 7 10.2075 9.0879 2.4675 19 14 10.4732 9.4453 -0.2673 20 1 9.2166 10.0591 -0.7668 21 1 11.4664 10.5122 0.0168 22 1 11.0174 8.5238 -1.2968 23 6 8.9880 4.5995 1.2255 24 6 8.5290 3.2971 1.2167 25 6 3.4867 -1.1490 -0.0058 26 7 2.1656 -1.1452 0.0005 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.6562 2.1369 -0.0004 31 1 5.8532 2.0664 0.0022 32 1 8.1634 0.7125 0.8998 33 1 8.1721 0.7169 -0.8801 34 1 8.3747 2.7912 -2.1168 35 1 9.1829 5.1157 -2.1124 36 1 10.4550 10.0245 2.5160 37 1 9.1632 5.1045 2.1639 38 1 8.3439 2.7840 2.1489 39 1 4.0250 -2.0853 -0.0106 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067930308.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:10 Heat of formation + Delta-G solvation = -12.827377 kcal Electronic energy + Delta-G solvation = -23725.203402 eV Core-core repulsion = 20018.810059 eV Total energy + Delta-G solvation = -3706.393343 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.38858 -41.04500 -40.38203 -38.61809 -36.03870 -35.50410 -34.44819 -33.88981 -31.91664 -31.64894 -29.55060 -27.76992 -26.30949 -25.64387 -24.42099 -23.73325 -22.19304 -21.89413 -19.88492 -19.48353 -19.12012 -18.76892 -17.05736 -16.90628 -16.84613 -16.62039 -16.40610 -16.00408 -15.70455 -15.68347 -15.53183 -15.14096 -14.68888 -14.47432 -14.30514 -14.07930 -13.76146 -13.71822 -13.35111 -13.24267 -13.12930 -12.78730 -12.61360 -12.48366 -12.35523 -12.29482 -11.94907 -11.58888 -11.31742 -10.92127 -10.40818 -10.25348 -10.09877 -9.85022 -9.11847 -8.51420 -6.24578 -0.74021 -0.06386 0.45791 0.53293 1.32223 1.35475 1.52096 1.56560 2.00751 2.27225 2.63898 2.73368 2.90879 3.00958 3.04613 3.14227 3.30897 3.71860 3.82767 3.93225 3.99004 4.07606 4.12205 4.40757 4.45621 4.52262 4.68513 4.77114 4.78395 4.83716 4.93459 5.03982 5.20295 5.26451 5.32043 5.34411 5.52081 5.68460 5.77236 5.86877 6.00193 6.17440 6.34599 6.60231 6.82632 6.98968 7.55176 8.59865 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.019990 B = 0.002412 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.329749 B =11603.545561 C =12366.828636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.106 3.894 3 C 0.054 3.946 4 N -0.423 5.423 5 C 0.000 4.000 6 C 0.574 3.426 7 O -0.561 6.561 8 N -0.696 5.696 9 C 0.179 3.821 10 C -0.176 4.176 11 C -0.044 4.044 12 C -0.192 4.192 13 C 0.130 3.870 14 O -0.241 6.241 15 C -0.400 4.400 16 H 0.083 0.917 17 C 0.011 3.989 18 N -0.921 5.921 19 Si 0.970 3.030 20 H -0.265 1.265 21 H -0.269 1.269 22 H -0.262 1.262 23 C -0.238 4.238 24 C -0.050 4.050 25 C 0.111 3.889 26 N -0.462 5.462 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.213 0.787 31 H 0.415 0.585 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.154 0.846 35 H 0.132 0.868 36 H 0.285 0.715 37 H 0.110 0.890 38 H 0.133 0.867 39 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.398 -17.087 -7.482 26.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.036 4.036 3 C -0.110 4.110 4 N -0.140 5.140 5 C -0.139 4.139 6 C 0.359 3.641 7 O -0.440 6.440 8 N -0.346 5.346 9 C 0.057 3.943 10 C -0.178 4.178 11 C -0.063 4.063 12 C -0.211 4.211 13 C 0.080 3.920 14 O -0.148 6.148 15 C -0.476 4.476 16 H 0.100 0.900 17 C -0.188 4.188 18 N -0.562 5.562 19 Si 0.793 3.207 20 H -0.190 1.190 21 H -0.193 1.193 22 H -0.186 1.186 23 C -0.257 4.257 24 C -0.068 4.068 25 C -0.048 4.048 26 N -0.177 5.177 27 H 0.121 0.879 28 H 0.101 0.899 29 H 0.129 0.871 30 H 0.229 0.771 31 H 0.252 0.748 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.172 0.828 35 H 0.150 0.850 36 H 0.095 0.905 37 H 0.128 0.872 38 H 0.151 0.849 39 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -17.731 -17.517 -7.533 26.038 hybrid contribution 0.375 1.150 0.259 1.237 sum -17.356 -16.366 -7.275 24.940 Atomic orbital electron populations 1.20941 0.84294 1.05682 1.05162 1.23371 1.00680 0.89074 0.90466 1.24365 0.89344 1.01124 0.96203 1.68333 1.10670 1.28389 1.06624 1.21958 0.95135 0.91743 1.05063 1.17831 0.85635 0.84027 0.76617 1.90777 1.69162 1.32061 1.52037 1.46062 1.07632 1.08760 1.72140 1.20082 0.78338 0.92486 1.03378 1.19520 1.08754 0.96449 0.93028 1.20958 0.94713 0.92130 0.98454 1.20520 1.08698 0.96519 0.95324 1.19739 0.92553 0.84399 0.95261 1.83523 1.75337 1.23441 1.32500 1.20713 1.48816 0.95054 0.83056 0.89980 1.25291 0.95809 0.96414 1.01301 1.69726 1.47756 1.13235 1.25462 0.85219 0.78967 0.78010 0.78544 1.18966 1.19347 1.18610 1.21263 1.09564 0.97250 0.97649 1.20924 0.94962 0.92477 0.98461 1.23874 0.90344 0.99239 0.91360 1.68562 1.07979 1.30233 1.10975 0.87904 0.89913 0.87095 0.77091 0.74797 0.90539 0.89608 0.82810 0.84989 0.90521 0.87219 0.84867 0.79790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.50 10.19 71.24 0.73 0.22 16 2 C 0.11 1.40 6.79 42.64 0.29 1.69 16 3 C 0.05 0.72 10.88 84.83 0.92 1.64 16 4 N -0.42 -8.39 9.71 -184.32 -1.79 -10.18 16 5 C 0.00 0.00 6.75 41.88 0.28 0.28 16 6 C 0.57 14.43 7.81 86.88 0.68 15.11 16 7 O -0.56 -16.67 16.35 -3.75 -0.06 -16.73 16 8 N -0.70 -16.24 5.54 -469.41 -2.60 -18.84 16 9 C 0.18 4.21 5.80 85.63 0.50 4.71 16 10 C -0.18 -4.90 5.25 -19.83 -0.10 -5.00 16 11 C -0.04 -1.24 9.69 22.25 0.22 -1.02 16 12 C -0.19 -6.80 9.99 22.39 0.22 -6.58 16 13 C 0.13 5.80 6.65 22.58 0.15 5.95 16 14 O -0.24 -12.67 8.59 -22.76 -0.20 -12.87 16 15 C -0.40 -23.04 9.95 67.92 0.68 -22.36 16 16 H 0.08 4.95 5.44 -2.91 -0.02 4.94 16 17 C 0.01 0.60 5.49 84.83 0.47 1.07 16 18 N -0.92 -54.23 13.96 21.61 0.30 -53.93 16 19 Si 0.97 44.44 28.62 68.60 1.96 46.40 16 20 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 22 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 23 C -0.24 -9.96 9.17 22.39 0.21 -9.76 16 24 C -0.05 -1.62 9.69 22.25 0.22 -1.40 16 25 C 0.11 2.24 10.77 84.93 0.91 3.16 16 26 N -0.46 -8.53 10.41 -182.21 -1.90 -10.43 16 27 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.11 0.00 8.08 -2.39 -0.02 -0.02 16 30 H 0.21 1.16 8.06 -2.91 -0.02 1.14 16 31 H 0.42 9.46 7.81 -92.71 -0.72 8.73 16 32 H 0.08 1.80 8.08 -2.39 -0.02 1.78 16 33 H 0.09 1.87 8.08 -2.39 -0.02 1.85 16 34 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 35 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 36 H 0.29 15.38 8.31 -92.71 -0.77 14.61 16 37 H 0.11 5.11 5.64 -2.91 -0.02 5.09 16 38 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 39 H 0.19 3.45 7.65 -2.91 -0.02 3.42 16 Total: -1.00 -70.86 346.99 2.46 -68.40 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.38 Total: 20.47 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 6.36 Total: -12.30 kcal Atomic # 7 Polarization: -87.39 SS G_CDS: -5.99 Total: -93.38 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.26 Total: -29.60 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.96 Total: 46.40 kcal Total: -70.86 2.46 -68.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067930308.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.575 kcal (2) G-P(sol) polarization free energy of solvation -70.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds