Wall clock time and date at job start Tue Mar 31 2020 11:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30059 * 126.18022 * 2 1 4 4 O 1.21294 * 110.47224 * 179.86377 * 3 2 1 5 5 C 1.34201 * 109.68742 * 0.40176 * 4 3 2 6 6 C 1.47808 * 126.67379 * 179.77298 * 5 4 3 7 7 C 1.39692 * 119.99297 * 179.69875 * 6 5 4 8 8 C 1.37662 * 120.00220 * 179.72273 * 7 6 5 9 9 C 1.39747 * 119.99558 * 0.55388 * 8 7 6 10 10 C 1.47700 * 120.00930 * 179.69741 * 9 8 7 11 11 O 1.21598 * 120.00572 * 215.82586 * 10 9 8 12 12 N 1.34777 * 119.99620 * 35.82680 * 10 9 8 13 13 C 1.36780 * 119.99922 * 185.30747 * 12 10 9 14 14 H 1.07999 * 119.99619 * 334.76840 * 13 12 10 15 15 C 1.39108 * 120.00196 * 154.76916 * 13 12 10 16 16 N 1.31332 * 120.00168 * 353.19544 * 15 13 12 17 17 Si 1.86800 * 120.00262 * 173.19257 * 15 13 12 18 18 H 1.48504 * 109.46899 * 60.00195 * 17 15 13 19 19 H 1.48500 * 109.47387 * 179.97438 * 17 15 13 20 20 H 1.48490 * 109.47132 * 300.00537 * 17 15 13 21 21 C 1.46500 * 120.00255 * 5.30311 * 12 10 9 22 22 C 1.53002 * 117.50192 * 132.65853 * 21 12 10 23 23 C 1.52994 * 117.50086 * 64.03306 * 21 12 10 24 24 C 1.39752 * 119.98214 * 359.72270 * 9 8 7 25 25 C 1.37655 * 119.99632 * 0.02562 * 24 9 8 26 26 N 1.32108 * 106.65547 * 359.74904 * 5 4 3 27 27 H 1.09001 * 109.47164 * 269.68598 * 1 2 3 28 28 H 1.08996 * 109.47237 * 29.69081 * 1 2 3 29 29 H 1.09001 * 109.46549 * 149.69497 * 1 2 3 30 30 H 1.07996 * 119.99752 * 359.97438 * 7 6 5 31 31 H 1.08000 * 120.00243 * 180.27280 * 8 7 6 32 32 H 0.97001 * 120.00187 * 185.02058 * 16 15 13 33 33 H 1.09006 * 115.54873 * 278.36584 * 21 12 10 34 34 H 1.09007 * 117.49349 * 359.97438 * 22 21 12 35 35 H 1.08992 * 117.50269 * 145.02302 * 22 21 12 36 36 H 1.09000 * 117.50573 * 214.97939 * 23 21 12 37 37 H 1.09002 * 117.49401 * 359.97438 * 23 21 12 38 38 H 1.08006 * 119.99751 * 179.97438 * 24 9 8 39 39 H 1.07995 * 119.99663 * 179.97438 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2748 1.0498 0.0000 4 8 3.4424 0.7214 0.0027 5 6 3.5356 -0.6174 -0.0041 6 6 4.7795 -1.4157 -0.0083 7 6 4.7137 -2.8111 -0.0090 8 6 5.8721 -3.5548 -0.0187 9 6 7.1139 -2.9139 -0.0162 10 6 8.3569 -3.7116 -0.0198 11 8 9.3299 -3.3242 0.5981 12 7 8.4128 -4.8691 -0.7080 13 6 9.5244 -5.6616 -0.6243 14 1 10.4802 -5.2262 -0.3728 15 6 9.4239 -7.0283 -0.8632 16 7 8.2446 -7.5796 -1.0370 17 14 10.9663 -8.0795 -0.9369 18 1 11.6860 -7.9939 0.3592 19 1 10.5907 -9.4917 -1.2015 20 1 11.8482 -7.5888 -2.0261 21 6 7.2828 -5.2784 -1.5457 22 6 7.5928 -5.7582 -2.9651 23 6 6.9356 -4.3942 -2.7450 24 6 7.1793 -1.5179 -0.0096 25 6 6.0206 -0.7747 -0.0052 26 7 2.2993 -1.0829 -0.0058 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3633 0.8927 -0.5090 29 1 -0.3632 -0.8873 -0.5186 30 1 3.7540 -3.3064 -0.0061 31 1 5.8212 -4.6336 -0.0237 32 1 8.1682 -8.5420 -1.1308 33 1 6.4582 -5.7602 -1.0202 34 1 8.6376 -5.7689 -3.2758 35 1 6.9723 -6.5558 -3.3736 36 1 5.8827 -4.2945 -3.0089 37 1 7.5477 -3.5076 -2.9105 38 1 8.1389 -1.0223 -0.0072 39 1 6.0712 0.3041 0.0003 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068230888.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:22 Heat of formation + Delta-G solvation = 106.963514 kcal Electronic energy + Delta-G solvation = -25204.910993 eV Core-core repulsion = 21503.712172 eV Total energy + Delta-G solvation = -3701.198820 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.55169 -39.74830 -38.00332 -36.21471 -36.10115 -33.60049 -33.05469 -31.51139 -30.80571 -30.43637 -29.19825 -25.85295 -24.39648 -23.61716 -22.18332 -21.98036 -21.44932 -20.93937 -19.44136 -18.17606 -17.91925 -17.11517 -16.60798 -16.21392 -15.23615 -15.10268 -14.48595 -14.25533 -14.13489 -13.97445 -13.81838 -13.48863 -13.24855 -13.18511 -12.90448 -12.60467 -12.44962 -12.32765 -11.88581 -11.49340 -11.31853 -11.21609 -11.05939 -10.87333 -10.73670 -10.59210 -10.44541 -10.29157 -9.90524 -9.50330 -8.94047 -8.80598 -8.62907 -8.36440 -7.85259 -6.45363 -4.00029 0.37467 1.56223 1.57828 2.27528 2.65673 3.11744 3.17610 3.20830 3.51157 3.57004 3.91545 3.98818 4.20845 4.59515 4.68026 4.79043 4.99462 5.02996 5.06098 5.12686 5.20635 5.32417 5.39414 5.54903 5.61730 5.71875 5.75649 5.83869 5.87986 6.02922 6.10588 6.20311 6.28109 6.43914 6.46359 6.69920 6.75566 6.90018 6.98218 7.07887 7.43090 7.97358 8.06531 8.33535 9.02188 9.23191 9.80690 10.57749 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.028560 B = 0.003155 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.158091 B = 8872.014885 C = 9399.420194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.170 3.830 3 N -0.394 5.394 4 O 0.077 5.923 5 C 0.246 3.754 6 C -0.048 4.048 7 C -0.064 4.064 8 C -0.100 4.100 9 C -0.050 4.050 10 C 0.475 3.525 11 O -0.582 6.582 12 N -0.401 5.401 13 C -0.309 4.309 14 H 0.101 0.899 15 C 0.041 3.959 16 N -0.863 5.863 17 Si 0.926 3.074 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.272 1.272 21 C 0.125 3.875 22 C -0.131 4.131 23 C -0.220 4.220 24 C -0.088 4.088 25 C -0.083 4.083 26 N -0.483 5.483 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.137 0.863 31 H 0.147 0.853 32 H 0.271 0.729 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.137 0.863 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.047 8.354 -1.736 14.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 N -0.104 5.104 4 O 0.019 5.981 5 C 0.030 3.970 6 C -0.051 4.051 7 C -0.084 4.084 8 C -0.118 4.118 9 C -0.055 4.055 10 C 0.265 3.735 11 O -0.467 6.467 12 N -0.118 5.118 13 C -0.437 4.437 14 H 0.119 0.881 15 C -0.165 4.165 16 N -0.499 5.499 17 Si 0.753 3.247 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.198 1.198 21 C 0.020 3.980 22 C -0.168 4.168 23 C -0.258 4.258 24 C -0.107 4.107 25 C -0.103 4.103 26 N -0.217 5.217 27 H 0.106 0.894 28 H 0.104 0.896 29 H 0.110 0.890 30 H 0.155 0.845 31 H 0.164 0.836 32 H 0.082 0.918 33 H 0.127 0.873 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.155 0.845 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.305 8.816 -1.560 15.217 hybrid contribution 0.710 -0.729 -0.083 1.021 sum -11.595 8.087 -1.643 14.232 Atomic orbital electron populations 1.20126 0.83001 1.04588 1.04240 1.25819 1.00525 0.83649 1.00271 1.74607 0.89287 1.23952 1.22585 1.85374 1.22140 1.24336 1.66239 1.26507 0.94565 0.81382 0.94563 1.17255 0.86199 0.91757 1.09907 1.21064 0.99355 0.91088 0.96906 1.21688 0.90679 1.01434 0.98030 1.20603 0.94714 0.94152 0.96009 1.17867 0.87571 0.83957 0.84143 1.90640 1.36959 1.71432 1.47689 1.43047 1.14916 1.17279 1.36515 1.19620 0.88481 0.88702 1.46859 0.88112 1.25355 0.98009 0.97071 0.96022 1.69837 1.22653 1.11859 1.45597 0.85987 0.81176 0.78338 0.79241 1.19670 1.20794 1.19761 1.21188 0.91430 0.99235 0.86133 1.22686 1.00725 0.94213 0.99216 1.23579 1.00636 0.95799 1.05831 1.21131 0.98400 0.92696 0.98448 1.21080 0.90649 1.00146 0.98456 1.72113 0.99144 1.28772 1.21705 0.89375 0.89613 0.89003 0.84544 0.83595 0.91825 0.87308 0.89338 0.89586 0.89419 0.89847 0.84472 0.84900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.48 10.51 36.01 0.38 -0.10 16 2 C 0.17 2.14 8.20 -156.56 -1.28 0.85 16 3 N -0.39 -5.43 12.15 31.19 0.38 -5.05 16 4 O 0.08 1.06 11.12 16.65 0.19 1.24 16 5 C 0.25 3.42 8.00 -13.86 -0.11 3.31 16 6 C -0.05 -0.67 5.88 -104.90 -0.62 -1.29 16 7 C -0.06 -0.91 9.68 -39.25 -0.38 -1.29 16 8 C -0.10 -1.62 7.69 -39.23 -0.30 -1.92 16 9 C -0.05 -0.93 4.93 -104.90 -0.52 -1.45 16 10 C 0.48 11.16 7.22 -12.40 -0.09 11.07 16 11 O -0.58 -15.64 16.54 5.28 0.09 -15.55 16 12 N -0.40 -9.61 2.92 -108.85 -0.32 -9.93 16 13 C -0.31 -8.05 8.90 -15.02 -0.13 -8.19 16 14 H 0.10 2.77 7.40 -52.49 -0.39 2.39 16 15 C 0.04 1.01 4.81 -17.44 -0.08 0.93 16 16 N -0.86 -20.83 10.24 55.50 0.57 -20.27 16 17 Si 0.93 19.56 29.56 -169.99 -5.03 14.54 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 C 0.13 2.56 2.10 -67.93 -0.14 2.42 16 22 C -0.13 -2.54 8.25 -26.73 -0.22 -2.76 16 23 C -0.22 -3.84 8.87 -26.73 -0.24 -4.08 16 24 C -0.09 -1.40 9.59 -39.23 -0.38 -1.77 16 25 C -0.08 -1.12 9.71 -39.25 -0.38 -1.50 16 26 N -0.48 -6.76 11.24 -10.16 -0.11 -6.87 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.14 1.75 7.87 -52.49 -0.41 1.33 16 31 H 0.15 2.43 5.24 -52.49 -0.28 2.16 16 32 H 0.27 6.28 8.31 -40.82 -0.34 5.94 16 33 H 0.11 2.23 6.26 -51.93 -0.32 1.90 16 34 H 0.09 1.88 7.88 -51.92 -0.41 1.47 16 35 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 38 H 0.14 2.14 8.01 -52.48 -0.42 1.72 16 39 H 0.13 1.44 7.93 -52.49 -0.42 1.02 16 LS Contribution 337.18 15.07 5.08 5.08 Total: -1.00 -29.26 337.18 -7.97 -37.24 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -4.32 Total: 5.35 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -4.50 Total: -5.78 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: 0.52 Total: -42.12 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.27 Total: -14.31 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.26 -7.97 -37.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068230888.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.199 kcal (2) G-P(sol) polarization free energy of solvation -29.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds