Wall clock time and date at job start Tue Mar 31 2020 11:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30059 * 126.18022 * 2 1 4 4 O 1.21294 * 110.47224 * 179.86377 * 3 2 1 5 5 C 1.34201 * 109.68742 * 0.40176 * 4 3 2 6 6 C 1.47808 * 126.67379 * 179.77298 * 5 4 3 7 7 C 1.39692 * 119.99297 * 179.69875 * 6 5 4 8 8 C 1.37662 * 120.00220 * 179.72273 * 7 6 5 9 9 C 1.39747 * 119.99558 * 0.55388 * 8 7 6 10 10 C 1.47700 * 120.00930 * 179.69741 * 9 8 7 11 11 O 1.21598 * 120.00572 * 215.82586 * 10 9 8 12 12 N 1.34777 * 119.99620 * 35.82680 * 10 9 8 13 13 C 1.36780 * 119.99922 * 185.30747 * 12 10 9 14 14 H 1.07999 * 119.99619 * 334.76840 * 13 12 10 15 15 C 1.39108 * 120.00196 * 154.76916 * 13 12 10 16 16 N 1.31332 * 120.00168 * 353.19544 * 15 13 12 17 17 Si 1.86800 * 120.00262 * 173.19257 * 15 13 12 18 18 H 1.48504 * 109.46899 * 60.00195 * 17 15 13 19 19 H 1.48500 * 109.47387 * 179.97438 * 17 15 13 20 20 H 1.48490 * 109.47132 * 300.00537 * 17 15 13 21 21 C 1.46500 * 120.00255 * 5.30311 * 12 10 9 22 22 C 1.53002 * 117.50192 * 132.65853 * 21 12 10 23 23 C 1.52994 * 117.50086 * 64.03306 * 21 12 10 24 24 C 1.39752 * 119.98214 * 359.72270 * 9 8 7 25 25 C 1.37655 * 119.99632 * 0.02562 * 24 9 8 26 26 N 1.32108 * 106.65547 * 359.74904 * 5 4 3 27 27 H 1.09001 * 109.47164 * 269.68598 * 1 2 3 28 28 H 1.08996 * 109.47237 * 29.69081 * 1 2 3 29 29 H 1.09001 * 109.46549 * 149.69497 * 1 2 3 30 30 H 1.07996 * 119.99752 * 359.97438 * 7 6 5 31 31 H 1.08000 * 120.00243 * 180.27280 * 8 7 6 32 32 H 0.97001 * 120.00187 * 185.02058 * 16 15 13 33 33 H 1.09006 * 115.54873 * 278.36584 * 21 12 10 34 34 H 1.09007 * 117.49349 * 359.97438 * 22 21 12 35 35 H 1.08992 * 117.50269 * 145.02302 * 22 21 12 36 36 H 1.09000 * 117.50573 * 214.97939 * 23 21 12 37 37 H 1.09002 * 117.49401 * 359.97438 * 23 21 12 38 38 H 1.08006 * 119.99751 * 179.97438 * 24 9 8 39 39 H 1.07995 * 119.99663 * 179.97438 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2748 1.0498 0.0000 4 8 3.4424 0.7214 0.0027 5 6 3.5356 -0.6174 -0.0041 6 6 4.7795 -1.4157 -0.0083 7 6 4.7137 -2.8111 -0.0090 8 6 5.8721 -3.5548 -0.0187 9 6 7.1139 -2.9139 -0.0162 10 6 8.3569 -3.7116 -0.0198 11 8 9.3299 -3.3242 0.5981 12 7 8.4128 -4.8691 -0.7080 13 6 9.5244 -5.6616 -0.6243 14 1 10.4802 -5.2262 -0.3728 15 6 9.4239 -7.0283 -0.8632 16 7 8.2446 -7.5796 -1.0370 17 14 10.9663 -8.0795 -0.9369 18 1 11.6860 -7.9939 0.3592 19 1 10.5907 -9.4917 -1.2015 20 1 11.8482 -7.5888 -2.0261 21 6 7.2828 -5.2784 -1.5457 22 6 7.5928 -5.7582 -2.9651 23 6 6.9356 -4.3942 -2.7450 24 6 7.1793 -1.5179 -0.0096 25 6 6.0206 -0.7747 -0.0052 26 7 2.2993 -1.0829 -0.0058 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3633 0.8927 -0.5090 29 1 -0.3632 -0.8873 -0.5186 30 1 3.7540 -3.3064 -0.0061 31 1 5.8212 -4.6336 -0.0237 32 1 8.1682 -8.5420 -1.1308 33 1 6.4582 -5.7602 -1.0202 34 1 8.6376 -5.7689 -3.2758 35 1 6.9723 -6.5558 -3.3736 36 1 5.8827 -4.2945 -3.0089 37 1 7.5477 -3.5076 -2.9105 38 1 8.1389 -1.0223 -0.0072 39 1 6.0712 0.3041 0.0003 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068230888.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:21 Heat of formation + Delta-G solvation = 89.666454 kcal Electronic energy + Delta-G solvation = -25205.661049 eV Core-core repulsion = 21503.712172 eV Total energy + Delta-G solvation = -3701.948877 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -46.57182 -41.27240 -39.44673 -37.92397 -37.12986 -35.00323 -34.54090 -33.21301 -32.10048 -31.65457 -30.01593 -27.50933 -25.78514 -24.75722 -23.53417 -23.38503 -22.88698 -22.19216 -21.00580 -19.20428 -19.13780 -18.73997 -18.14215 -17.39784 -17.03169 -16.60440 -15.92696 -15.75694 -15.61043 -14.98507 -14.95718 -14.61625 -14.46586 -14.44027 -14.04119 -13.96063 -13.76991 -13.42733 -13.25722 -12.99047 -12.86510 -12.56588 -12.44238 -12.23895 -12.17187 -12.11092 -12.03702 -11.62841 -11.35680 -11.09416 -10.68456 -10.35091 -10.00982 -9.74090 -9.62973 -8.31037 -5.95914 -0.79476 0.37324 0.45973 1.20342 1.41923 1.42868 1.50864 1.57785 2.03391 2.25677 2.57036 2.74872 2.92686 3.01863 3.08961 3.24459 3.74192 3.85740 3.90070 3.92470 4.20640 4.31645 4.34602 4.40551 4.46576 4.53867 4.60923 4.65766 4.74719 4.84923 4.86671 5.01401 5.09682 5.14576 5.22739 5.25566 5.37196 5.44119 5.45835 5.53263 5.73720 6.08386 6.49527 7.04960 7.14146 7.41030 7.98201 8.69614 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.028560 B = 0.003155 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.158091 B = 8872.014885 C = 9399.420194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.170 3.830 3 N -0.409 5.409 4 O 0.074 5.926 5 C 0.241 3.759 6 C -0.035 4.035 7 C -0.053 4.053 8 C -0.094 4.094 9 C -0.075 4.075 10 C 0.466 3.534 11 O -0.631 6.631 12 N -0.414 5.414 13 C -0.350 4.350 14 H 0.069 0.931 15 C 0.018 3.982 16 N -0.868 5.868 17 Si 0.980 3.020 18 H -0.280 1.280 19 H -0.267 1.267 20 H -0.271 1.271 21 C 0.110 3.890 22 C -0.136 4.136 23 C -0.184 4.184 24 C -0.088 4.088 25 C -0.067 4.067 26 N -0.492 5.492 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.156 0.844 31 H 0.140 0.860 32 H 0.276 0.724 33 H 0.110 0.890 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.076 0.924 38 H 0.134 0.866 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.054 9.089 -2.415 17.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.102 4.102 3 N -0.120 5.120 4 O 0.018 5.982 5 C 0.025 3.975 6 C -0.037 4.037 7 C -0.073 4.073 8 C -0.113 4.113 9 C -0.079 4.079 10 C 0.257 3.743 11 O -0.521 6.521 12 N -0.129 5.129 13 C -0.478 4.478 14 H 0.087 0.913 15 C -0.187 4.187 16 N -0.504 5.504 17 Si 0.804 3.196 18 H -0.205 1.205 19 H -0.192 1.192 20 H -0.196 1.196 21 C 0.006 3.994 22 C -0.173 4.173 23 C -0.222 4.222 24 C -0.107 4.107 25 C -0.086 4.086 26 N -0.227 5.227 27 H 0.123 0.877 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.173 0.827 31 H 0.157 0.843 32 H 0.086 0.914 33 H 0.127 0.873 34 H 0.082 0.918 35 H 0.118 0.882 36 H 0.140 0.860 37 H 0.095 0.905 38 H 0.152 0.848 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -15.343 9.546 -2.263 18.211 hybrid contribution 1.485 -0.828 0.163 1.708 sum -13.858 8.718 -2.100 16.506 Atomic orbital electron populations 1.20390 0.79984 1.05963 1.05711 1.26622 1.02204 0.82763 0.98636 1.74618 0.89384 1.24557 1.23490 1.85365 1.22403 1.24093 1.66297 1.26405 0.94504 0.81610 0.95027 1.17335 0.86513 0.91726 1.08152 1.21138 0.99143 0.91166 0.95846 1.21531 0.90400 1.01209 0.98144 1.20263 0.93193 0.94746 0.99690 1.18679 0.88614 0.84061 0.82932 1.90577 1.39266 1.72694 1.49519 1.43195 1.15206 1.17318 1.37173 1.19470 0.88505 0.89982 1.49805 0.91293 1.25892 1.00550 0.97186 0.95109 1.69887 1.23400 1.12185 1.44892 0.85205 0.78308 0.77497 0.78629 1.20522 1.19176 1.19641 1.21242 0.90570 1.01389 0.86242 1.22634 0.99851 0.96189 0.98669 1.23554 1.02112 0.94254 1.02282 1.21148 0.99421 0.91729 0.98441 1.21279 0.89352 1.01467 0.96533 1.72133 0.99319 1.29515 1.21697 0.87721 0.88125 0.87746 0.82664 0.84253 0.91400 0.87321 0.91813 0.88233 0.86007 0.90538 0.84777 0.81789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.76 10.51 71.24 0.75 -0.01 16 2 C 0.17 3.74 8.20 138.53 1.14 4.87 16 3 N -0.41 -10.14 12.15 -58.61 -0.71 -10.85 16 4 O 0.07 1.83 11.12 69.64 0.77 2.61 16 5 C 0.24 5.96 8.00 87.30 0.70 6.66 16 6 C -0.03 -0.86 5.88 -20.04 -0.12 -0.98 16 7 C -0.05 -1.37 9.68 22.49 0.22 -1.16 16 8 C -0.09 -2.97 7.69 22.50 0.17 -2.80 16 9 C -0.07 -2.80 4.93 -20.05 -0.10 -2.90 16 10 C 0.47 22.96 7.22 86.74 0.63 23.58 16 11 O -0.63 -36.13 16.54 -4.02 -0.07 -36.20 16 12 N -0.41 -20.66 2.92 -616.55 -1.80 -22.46 16 13 C -0.35 -19.24 8.90 84.13 0.75 -18.49 16 14 H 0.07 4.11 7.40 -2.91 -0.02 4.09 16 15 C 0.02 0.90 4.81 84.98 0.41 1.31 16 16 N -0.87 -42.21 10.24 21.69 0.22 -41.99 16 17 Si 0.98 40.94 29.56 68.60 2.03 42.97 16 18 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 19 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 21 C 0.11 4.52 2.10 44.99 0.09 4.61 16 22 C -0.14 -5.26 8.25 30.60 0.25 -5.01 16 23 C -0.18 -6.19 8.87 30.59 0.27 -5.92 16 24 C -0.09 -2.76 9.59 22.50 0.22 -2.54 16 25 C -0.07 -1.62 9.71 22.48 0.22 -1.40 16 26 N -0.49 -12.18 11.24 -302.74 -3.40 -15.59 16 27 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.16 3.46 7.87 -2.91 -0.02 3.43 16 31 H 0.14 4.59 5.24 -2.91 -0.02 4.57 16 32 H 0.28 12.66 8.31 -92.71 -0.77 11.88 16 33 H 0.11 4.44 6.26 -2.38 -0.01 4.43 16 34 H 0.06 2.78 7.88 -2.38 -0.02 2.76 16 35 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 36 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 37 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.13 4.24 8.01 -2.91 -0.02 4.22 16 39 H 0.16 2.98 7.93 -2.91 -0.02 2.96 16 Total: -1.00 -66.25 337.18 3.73 -62.52 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 1.09 Total: 19.16 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 5.59 Total: -0.17 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -5.69 Total: -90.89 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: 0.71 Total: -33.59 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -66.25 3.73 -62.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068230888.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.185 kcal (2) G-P(sol) polarization free energy of solvation -66.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds