Wall clock time and date at job start Tue Mar 31 2020 10:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86797 * 120.00115 * 2 1 4 4 H 1.48502 * 109.46983 * 269.99456 * 3 2 1 5 5 H 1.48496 * 109.47207 * 29.99740 * 3 2 1 6 6 H 1.48499 * 109.47207 * 150.00084 * 3 2 1 7 7 C 1.38636 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99729 * 0.02562 * 7 2 1 9 9 O 1.34808 * 119.99961 * 179.97438 * 7 2 1 10 10 C 1.35781 * 116.99952 * 174.96896 * 9 7 2 11 11 C 1.38903 * 119.99938 * 5.33789 * 10 9 7 12 12 C 1.38008 * 120.00284 * 180.02562 * 11 10 9 13 13 C 1.38908 * 119.99999 * 0.02562 * 12 11 10 14 14 N 1.40027 * 120.00499 * 179.97438 * 13 12 11 15 15 C 1.34780 * 119.99553 * 35.12374 * 14 13 12 16 16 O 1.21590 * 120.00344 * 355.49791 * 15 14 13 17 17 N 1.34779 * 119.99521 * 175.49224 * 15 14 13 18 18 C 1.46500 * 119.99770 * 179.97438 * 17 15 14 19 19 C 1.50697 * 109.47129 * 180.02562 * 18 17 15 20 20 C 1.38227 * 119.61659 * 95.02595 * 19 18 17 21 21 C 1.38634 * 119.16149 * 179.74495 * 20 19 18 22 22 C 1.38677 * 118.41723 * 0.47350 * 21 20 19 23 23 C 1.38177 * 119.16139 * 359.50537 * 22 21 20 24 24 N 1.31852 * 119.62110 * 275.00201 * 19 18 17 25 25 C 1.38912 * 119.99546 * 0.24460 * 13 12 11 26 26 C 1.38012 * 120.00119 * 359.49895 * 25 13 12 27 27 H 0.96995 * 119.99505 * 0.02562 * 1 2 3 28 28 H 1.08007 * 119.99935 * 0.02562 * 11 10 9 29 29 H 1.08003 * 120.00243 * 179.97438 * 12 11 10 30 30 H 0.96998 * 120.00523 * 215.12948 * 14 13 12 31 31 H 0.96997 * 120.00569 * 0.02562 * 17 15 14 32 32 H 1.09004 * 109.47174 * 60.00516 * 18 17 15 33 33 H 1.09004 * 109.47389 * 300.00230 * 18 17 15 34 34 H 1.08001 * 120.42370 * 359.95257 * 20 19 18 35 35 H 1.07996 * 120.79120 * 180.22635 * 21 20 19 36 36 H 1.07999 * 120.41667 * 179.77751 * 22 21 20 37 37 H 1.08009 * 119.61355 * 180.25496 * 23 22 21 38 38 H 1.08003 * 119.99844 * 179.74953 * 25 13 12 39 39 H 1.07998 * 120.00145 * 180.25299 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4974 2.0463 -1.4001 5 1 1.4473 2.6526 0.7000 6 1 3.5474 1.4401 0.7000 7 6 2.0090 -1.2006 0.0005 8 1 1.4689 -2.1359 0.0005 9 8 3.3570 -1.2006 0.0000 10 6 3.9735 -2.4057 0.1067 11 6 3.2216 -3.5736 0.0982 12 6 3.8480 -4.7985 0.2072 13 6 5.2305 -4.8635 0.3258 14 7 5.8662 -6.1062 0.4369 15 6 5.3810 -7.1731 -0.2286 16 8 4.3460 -7.0770 -0.8594 17 7 6.0433 -8.3464 -0.1949 18 6 5.5157 -9.5063 -0.9178 19 6 6.4360 -10.6830 -0.7195 20 6 6.1687 -11.5982 0.2813 21 6 7.0186 -12.6801 0.4520 22 6 8.1160 -12.7961 -0.3878 23 6 8.3188 -11.8420 -1.3665 24 7 7.4866 -10.8280 -1.5029 25 6 5.9820 -3.6952 0.3399 26 6 5.3559 -2.4706 0.2256 27 1 -0.4849 0.8400 -0.0004 28 1 2.1466 -3.5232 0.0064 29 1 3.2633 -5.7066 0.2010 30 1 6.6556 -6.1992 0.9928 31 1 6.8688 -8.4232 0.3085 32 1 5.4483 -9.2724 -1.9804 33 1 4.5246 -9.7522 -0.5364 34 1 5.3068 -11.4739 0.9201 35 1 6.8327 -13.4129 1.2232 36 1 8.8011 -13.6241 -0.2810 37 1 9.1689 -11.9275 -2.0272 38 1 7.0565 -3.7455 0.4362 39 1 5.9405 -1.5625 0.2325 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073117319.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:16 Heat of formation + Delta-G solvation = 20.257039 kcal Electronic energy + Delta-G solvation = -23677.314216 eV Core-core repulsion = 19972.355520 eV Total energy + Delta-G solvation = -3704.958695 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.81382 -40.17267 -38.85765 -36.83645 -35.09585 -33.98139 -32.93053 -32.29406 -31.79963 -30.21701 -28.35282 -26.67771 -25.01151 -23.99842 -22.76474 -22.26117 -21.45682 -20.50402 -18.68852 -17.90725 -17.53318 -17.12016 -16.88241 -16.61150 -15.80942 -15.50343 -15.25580 -14.66027 -14.27846 -14.13181 -13.90289 -13.78618 -13.73259 -13.68783 -13.25600 -12.96882 -12.68992 -12.35476 -12.21766 -12.09667 -11.67552 -11.57517 -10.91699 -10.69780 -10.40184 -10.25985 -10.00578 -9.91191 -9.65916 -9.54574 -9.21229 -9.19574 -8.70756 -8.21867 -6.98792 -6.35672 -4.01301 0.51072 0.77738 2.11252 2.20694 2.66427 3.25138 3.28944 3.32037 3.38431 3.43915 3.75516 4.21378 4.27174 4.28578 4.37346 4.55995 4.57390 4.62102 4.90899 4.98918 5.16070 5.18404 5.24601 5.48429 5.61290 5.66122 5.68083 5.70896 6.13164 6.15251 6.16447 6.21562 6.32467 6.62892 6.69509 6.89500 7.15184 7.20559 7.37411 7.50097 7.65458 7.85935 8.02239 8.09033 8.65778 8.99520 9.62041 10.72063 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.043102 B = 0.002072 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.467311 B =13511.896555 C =13881.910967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.062 3.938 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.387 4.387 8 H 0.107 0.893 9 O -0.218 6.218 10 C 0.150 3.850 11 C -0.206 4.206 12 C -0.066 4.066 13 C 0.063 3.937 14 N -0.675 5.675 15 C 0.702 3.298 16 O -0.572 6.572 17 N -0.742 5.742 18 C 0.192 3.808 19 C 0.109 3.891 20 C -0.152 4.152 21 C -0.077 4.077 22 C -0.169 4.169 23 C 0.099 3.901 24 N -0.468 5.468 25 C -0.098 4.098 26 C -0.177 4.177 27 H 0.279 0.721 28 H 0.136 0.864 29 H 0.130 0.870 30 H 0.398 0.602 31 H 0.395 0.605 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.158 0.842 38 H 0.116 0.884 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.576 -24.576 2.863 30.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.463 4.463 8 H 0.124 0.876 9 O -0.123 6.123 10 C 0.098 3.902 11 C -0.226 4.226 12 C -0.087 4.087 13 C -0.030 4.030 14 N -0.322 5.322 15 C 0.402 3.598 16 O -0.448 6.448 17 N -0.398 5.398 18 C 0.067 3.933 19 C -0.029 4.029 20 C -0.173 4.173 21 C -0.103 4.103 22 C -0.189 4.189 23 C -0.059 4.059 24 N -0.178 5.178 25 C -0.119 4.119 26 C -0.197 4.197 27 H 0.089 0.911 28 H 0.154 0.846 29 H 0.147 0.853 30 H 0.232 0.768 31 H 0.228 0.772 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.175 0.825 38 H 0.134 0.866 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 16.629 -23.523 1.572 28.850 hybrid contribution 0.880 -0.259 1.126 1.452 sum 17.509 -23.782 2.697 29.655 Atomic orbital electron populations 1.69663 1.05539 1.28381 1.48280 1.24471 0.95037 0.98795 0.95825 0.86169 0.80279 0.81460 0.78905 1.19939 1.20907 1.18367 1.20777 0.76939 0.96655 1.51906 0.87581 1.83561 1.22571 1.25655 1.80548 1.19145 0.91690 0.85582 0.93827 1.21233 1.01290 0.91285 1.08743 1.20943 0.92478 0.97862 0.97369 1.17094 0.91527 0.82634 1.11722 1.42276 1.32484 1.07490 1.49997 1.15880 0.83724 0.80019 0.80131 1.90957 1.23725 1.83119 1.46991 1.44942 1.28621 1.09710 1.56566 1.19911 0.94124 0.80654 0.98598 1.21258 0.93513 0.96047 0.92065 1.22090 1.01100 0.95288 0.98783 1.21653 0.93514 0.97011 0.98102 1.22238 0.98813 1.00843 0.96960 1.22829 0.97412 0.89555 0.96067 1.67539 1.03041 1.21936 1.25265 1.20320 0.98104 0.90748 1.02693 1.19958 0.91935 0.97234 1.10567 0.91129 0.84604 0.85267 0.76796 0.77188 0.89587 0.89740 0.84305 0.84531 0.84585 0.82473 0.86648 0.86110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.86 13.96 55.48 0.77 -25.08 16 2 C 0.06 1.76 5.49 -17.51 -0.10 1.66 16 3 Si 0.91 21.95 28.62 -169.99 -4.86 17.09 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.39 -11.12 9.94 30.88 0.31 -10.81 16 8 H 0.11 3.13 5.43 -52.49 -0.28 2.84 16 9 O -0.22 -5.84 8.58 0.02 0.00 -5.84 16 10 C 0.15 3.53 6.65 -39.09 -0.26 3.27 16 11 C -0.21 -4.70 9.16 -39.42 -0.36 -5.06 16 12 C -0.07 -1.35 8.69 -39.42 -0.34 -1.70 16 13 C 0.06 1.11 6.30 -83.62 -0.53 0.59 16 14 N -0.68 -9.22 5.35 -14.18 -0.08 -9.30 16 15 C 0.70 10.28 8.41 -86.91 -0.73 9.55 16 16 O -0.57 -10.89 13.78 5.29 0.07 -10.82 16 17 N -0.74 -7.76 5.55 -66.41 -0.37 -8.13 16 18 C 0.19 1.91 5.98 -5.20 -0.03 1.88 16 19 C 0.11 0.93 6.15 -82.59 -0.51 0.42 16 20 C -0.15 -0.98 9.72 -39.44 -0.38 -1.37 16 21 C -0.08 -0.39 10.18 -39.27 -0.40 -0.79 16 22 C -0.17 -0.84 10.11 -39.44 -0.40 -1.24 16 23 C 0.10 0.66 11.18 -17.55 -0.20 0.46 16 24 N -0.47 -4.37 10.27 -9.47 -0.10 -4.47 16 25 C -0.10 -1.65 9.96 -39.41 -0.39 -2.05 16 26 C -0.18 -3.50 9.99 -39.42 -0.39 -3.90 16 27 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.14 3.27 5.63 -52.48 -0.30 2.97 16 29 H 0.13 2.66 6.22 -52.48 -0.33 2.33 16 30 H 0.40 3.86 8.84 -40.82 -0.36 3.50 16 31 H 0.39 3.15 8.48 -40.82 -0.35 2.80 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 34 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 36 H 0.14 0.33 8.06 -52.49 -0.42 -0.09 16 37 H 0.16 0.68 8.06 -52.48 -0.42 0.25 16 38 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 39 H 0.12 2.19 8.06 -52.49 -0.42 1.76 16 LS Contribution 342.78 15.07 5.17 5.17 Total: -1.00 -34.58 342.78 -8.23 -42.81 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -4.13 Total: 7.65 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -4.71 Total: -9.08 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 0.23 Total: -46.97 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: 0.07 Total: -16.67 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.86 Total: 17.09 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.58 -8.23 -42.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073117319.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.065 kcal (2) G-P(sol) polarization free energy of solvation -34.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds