Wall clock time and date at job start Tue Mar 31 2020 10:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86797 * 120.00115 * 2 1 4 4 H 1.48502 * 109.46983 * 269.99456 * 3 2 1 5 5 H 1.48496 * 109.47207 * 29.99740 * 3 2 1 6 6 H 1.48499 * 109.47207 * 150.00084 * 3 2 1 7 7 C 1.38636 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99729 * 0.02562 * 7 2 1 9 9 O 1.34808 * 119.99961 * 179.97438 * 7 2 1 10 10 C 1.35781 * 116.99952 * 174.96896 * 9 7 2 11 11 C 1.38903 * 119.99938 * 5.33789 * 10 9 7 12 12 C 1.38008 * 120.00284 * 180.02562 * 11 10 9 13 13 C 1.38908 * 119.99999 * 0.02562 * 12 11 10 14 14 N 1.40027 * 120.00499 * 179.97438 * 13 12 11 15 15 C 1.34780 * 119.99553 * 35.12374 * 14 13 12 16 16 O 1.21590 * 120.00344 * 355.49791 * 15 14 13 17 17 N 1.34779 * 119.99521 * 175.49224 * 15 14 13 18 18 C 1.46500 * 119.99770 * 179.97438 * 17 15 14 19 19 C 1.50697 * 109.47129 * 180.02562 * 18 17 15 20 20 C 1.38227 * 119.61659 * 95.02595 * 19 18 17 21 21 C 1.38634 * 119.16149 * 179.74495 * 20 19 18 22 22 C 1.38677 * 118.41723 * 0.47350 * 21 20 19 23 23 C 1.38177 * 119.16139 * 359.50537 * 22 21 20 24 24 N 1.31852 * 119.62110 * 275.00201 * 19 18 17 25 25 C 1.38912 * 119.99546 * 0.24460 * 13 12 11 26 26 C 1.38012 * 120.00119 * 359.49895 * 25 13 12 27 27 H 0.96995 * 119.99505 * 0.02562 * 1 2 3 28 28 H 1.08007 * 119.99935 * 0.02562 * 11 10 9 29 29 H 1.08003 * 120.00243 * 179.97438 * 12 11 10 30 30 H 0.96998 * 120.00523 * 215.12948 * 14 13 12 31 31 H 0.96997 * 120.00569 * 0.02562 * 17 15 14 32 32 H 1.09004 * 109.47174 * 60.00516 * 18 17 15 33 33 H 1.09004 * 109.47389 * 300.00230 * 18 17 15 34 34 H 1.08001 * 120.42370 * 359.95257 * 20 19 18 35 35 H 1.07996 * 120.79120 * 180.22635 * 21 20 19 36 36 H 1.07999 * 120.41667 * 179.77751 * 22 21 20 37 37 H 1.08009 * 119.61355 * 180.25496 * 23 22 21 38 38 H 1.08003 * 119.99844 * 179.74953 * 25 13 12 39 39 H 1.07998 * 120.00145 * 180.25299 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4974 2.0463 -1.4001 5 1 1.4473 2.6526 0.7000 6 1 3.5474 1.4401 0.7000 7 6 2.0090 -1.2006 0.0005 8 1 1.4689 -2.1359 0.0005 9 8 3.3570 -1.2006 0.0000 10 6 3.9735 -2.4057 0.1067 11 6 3.2216 -3.5736 0.0982 12 6 3.8480 -4.7985 0.2072 13 6 5.2305 -4.8635 0.3258 14 7 5.8662 -6.1062 0.4369 15 6 5.3810 -7.1731 -0.2286 16 8 4.3460 -7.0770 -0.8594 17 7 6.0433 -8.3464 -0.1949 18 6 5.5157 -9.5063 -0.9178 19 6 6.4360 -10.6830 -0.7195 20 6 6.1687 -11.5982 0.2813 21 6 7.0186 -12.6801 0.4520 22 6 8.1160 -12.7961 -0.3878 23 6 8.3188 -11.8420 -1.3665 24 7 7.4866 -10.8280 -1.5029 25 6 5.9820 -3.6952 0.3399 26 6 5.3559 -2.4706 0.2256 27 1 -0.4849 0.8400 -0.0004 28 1 2.1466 -3.5232 0.0064 29 1 3.2633 -5.7066 0.2010 30 1 6.6556 -6.1992 0.9928 31 1 6.8688 -8.4232 0.3085 32 1 5.4483 -9.2724 -1.9804 33 1 4.5246 -9.7522 -0.5364 34 1 5.3068 -11.4739 0.9201 35 1 6.8327 -13.4129 1.2232 36 1 8.8011 -13.6241 -0.2810 37 1 9.1689 -11.9275 -2.0272 38 1 7.0565 -3.7455 0.4362 39 1 5.9405 -1.5625 0.2325 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073117319.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:16 Heat of formation + Delta-G solvation = -4.782637 kcal Electronic energy + Delta-G solvation = -23678.400018 eV Core-core repulsion = 19972.355520 eV Total energy + Delta-G solvation = -3706.044497 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.74350 -41.12365 -40.49549 -38.42510 -36.11286 -35.42551 -34.35196 -33.41127 -32.52111 -31.85190 -29.79377 -27.72778 -26.87206 -24.45523 -24.12046 -23.33967 -22.71466 -21.85195 -20.14584 -19.47241 -19.15269 -18.38348 -17.64164 -17.31158 -16.75797 -16.57966 -16.34101 -16.08011 -15.77968 -15.63123 -15.41971 -15.30298 -14.65941 -14.41457 -14.33641 -14.17875 -14.10633 -13.90479 -13.65075 -13.32957 -13.22808 -12.72526 -12.57025 -12.45444 -12.01740 -11.53196 -11.38599 -11.00944 -10.84499 -10.65319 -10.43923 -10.20123 -10.06522 -9.83529 -8.62809 -8.47338 -6.19480 0.01177 0.33643 0.51710 0.56776 1.33868 1.38985 1.54792 1.61313 2.06303 2.30843 2.79085 2.81376 3.05496 3.15649 3.19571 3.31596 3.71505 4.02861 4.09971 4.12926 4.15980 4.21188 4.47715 4.49007 4.52628 4.64471 4.69114 4.76429 4.83131 5.06740 5.19880 5.20168 5.26341 5.29512 5.38897 5.51097 5.63266 5.74634 5.77078 5.93221 5.96124 6.23389 6.86314 6.97907 7.00621 7.49082 7.59646 8.64514 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.043102 B = 0.002072 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.467311 B =13511.896555 C =13881.910967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.976 3.024 4 H -0.267 1.267 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.399 4.399 8 H 0.076 0.924 9 O -0.241 6.241 10 C 0.110 3.890 11 C -0.222 4.222 12 C -0.081 4.081 13 C 0.089 3.911 14 N -0.661 5.661 15 C 0.699 3.301 16 O -0.619 6.619 17 N -0.718 5.718 18 C 0.194 3.806 19 C 0.092 3.908 20 C -0.153 4.153 21 C -0.077 4.077 22 C -0.159 4.159 23 C 0.084 3.916 24 N -0.503 5.503 25 C -0.080 4.080 26 C -0.166 4.166 27 H 0.284 0.716 28 H 0.105 0.895 29 H 0.122 0.878 30 H 0.424 0.576 31 H 0.411 0.589 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.151 0.849 35 H 0.165 0.835 36 H 0.167 0.833 37 H 0.175 0.825 38 H 0.172 0.828 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.966 -26.342 4.001 34.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.798 3.202 4 H -0.192 1.192 5 H -0.193 1.193 6 H -0.181 1.181 7 C -0.475 4.475 8 H 0.093 0.907 9 O -0.148 6.148 10 C 0.061 3.939 11 C -0.242 4.242 12 C -0.101 4.101 13 C -0.005 4.005 14 N -0.311 5.311 15 C 0.400 3.600 16 O -0.499 6.499 17 N -0.375 5.375 18 C 0.069 3.931 19 C -0.046 4.046 20 C -0.174 4.174 21 C -0.103 4.103 22 C -0.178 4.178 23 C -0.073 4.073 24 N -0.213 5.213 25 C -0.100 4.100 26 C -0.185 4.185 27 H 0.094 0.906 28 H 0.123 0.877 29 H 0.140 0.860 30 H 0.262 0.738 31 H 0.247 0.753 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.169 0.831 35 H 0.183 0.817 36 H 0.184 0.816 37 H 0.192 0.808 38 H 0.189 0.811 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 21.106 -25.373 2.742 33.117 hybrid contribution -0.260 -0.159 0.779 0.837 sum 20.845 -25.532 3.522 33.148 Atomic orbital electron populations 1.69758 1.07051 1.29594 1.50285 1.25360 0.95951 1.02396 0.95501 0.85136 0.78888 0.76918 0.79259 1.19180 1.19306 1.18110 1.20679 0.78279 0.96004 1.52571 0.90691 1.83499 1.20989 1.27108 1.83231 1.19678 0.93443 0.84764 0.96036 1.21119 1.00141 0.92703 1.10224 1.20929 0.94250 0.96433 0.98533 1.17210 0.90514 0.84764 1.08011 1.42058 1.32881 1.05879 1.50233 1.16064 0.83283 0.80941 0.79731 1.90947 1.25988 1.83976 1.48952 1.44749 1.28542 1.08466 1.55736 1.19876 0.95019 0.81074 0.97109 1.20986 0.93841 0.96224 0.93519 1.22245 1.01727 0.95218 0.98191 1.22042 0.92909 0.96827 0.98505 1.22594 0.98879 1.00771 0.95602 1.23232 0.97567 0.89442 0.97061 1.67443 1.03943 1.23669 1.26201 1.20812 1.00593 0.88759 0.99850 1.20379 0.90117 0.99556 1.08481 0.90613 0.87696 0.86014 0.73785 0.75287 0.91882 0.89555 0.83125 0.81727 0.81592 0.80753 0.81055 0.83730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.98 13.96 21.61 0.30 -56.68 16 2 C 0.01 0.34 5.49 84.83 0.47 0.81 16 3 Si 0.98 46.19 28.62 68.60 1.96 48.15 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.40 -24.36 9.94 67.92 0.68 -23.68 16 8 H 0.08 4.88 5.43 -2.91 -0.02 4.87 16 9 O -0.24 -13.36 8.58 -22.86 -0.20 -13.55 16 10 C 0.11 5.32 6.65 22.59 0.15 5.47 16 11 C -0.22 -10.76 9.16 22.37 0.20 -10.55 16 12 C -0.08 -3.37 8.69 22.38 0.19 -3.18 16 13 C 0.09 2.95 6.30 38.15 0.24 3.19 16 14 N -0.66 -16.03 5.35 -317.04 -1.69 -17.73 16 15 C 0.70 19.51 8.41 179.05 1.51 21.01 16 16 O -0.62 -23.80 13.78 -4.00 -0.06 -23.86 16 17 N -0.72 -13.87 5.55 -482.28 -2.68 -16.55 16 18 C 0.19 3.80 5.98 85.63 0.51 4.31 16 19 C 0.09 1.45 6.15 42.55 0.26 1.71 16 20 C -0.15 -1.65 9.72 22.36 0.22 -1.43 16 21 C -0.08 -0.53 10.18 22.47 0.23 -0.30 16 22 C -0.16 -1.05 10.11 22.36 0.23 -0.82 16 23 C 0.08 0.94 11.18 84.67 0.95 1.89 16 24 N -0.50 -8.76 10.27 -183.89 -1.89 -10.65 16 25 C -0.08 -2.37 9.96 22.38 0.22 -2.14 16 26 C -0.17 -6.18 9.99 22.38 0.22 -5.95 16 27 H 0.28 15.99 8.31 -92.71 -0.77 15.22 16 28 H 0.11 5.64 5.63 -2.91 -0.02 5.63 16 29 H 0.12 5.24 6.22 -2.91 -0.02 5.22 16 30 H 0.42 6.22 8.84 -92.71 -0.82 5.40 16 31 H 0.41 5.44 8.48 -92.71 -0.79 4.66 16 32 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.09 1.64 8.04 -2.38 -0.02 1.62 16 34 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 35 H 0.17 0.19 8.06 -2.91 -0.02 0.16 16 36 H 0.17 0.06 8.06 -2.91 -0.02 0.04 16 37 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 38 H 0.17 3.28 8.06 -2.91 -0.02 3.26 16 39 H 0.14 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -81.40 342.78 1.54 -79.86 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -0.49 Total: 20.69 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: 6.28 Total: -9.69 kcal Atomic # 7 Polarization: -95.64 SS G_CDS: -5.96 Total: -101.60 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -0.25 Total: -37.41 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.96 Total: 48.15 kcal Total: -81.40 1.54 -79.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073117319.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.073 kcal (2) G-P(sol) polarization free energy of solvation -81.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds