Wall clock time and date at job start Tue Mar 31 2020 11:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47344 * 2 1 4 4 N 1.46499 * 109.47329 * 185.18499 * 3 2 1 5 5 C 1.36938 * 119.99815 * 87.53071 * 4 3 2 6 6 H 1.07997 * 120.00207 * 181.90429 * 5 4 3 7 7 C 1.38812 * 120.00096 * 1.91203 * 5 4 3 8 8 N 1.31620 * 119.99802 * 331.01881 * 7 5 4 9 9 Si 1.86799 * 120.00266 * 151.02488 * 7 5 4 10 10 H 1.48501 * 109.47332 * 94.98911 * 9 7 5 11 11 H 1.48491 * 109.47445 * 214.99448 * 9 7 5 12 12 H 1.48508 * 109.47172 * 334.99440 * 9 7 5 13 13 C 1.46494 * 120.00045 * 267.52703 * 4 3 2 14 14 C 1.50698 * 109.47502 * 263.03346 * 13 4 3 15 15 C 1.38252 * 119.93517 * 263.47285 * 14 13 4 16 16 C 1.38227 * 120.15267 * 180.02562 * 15 14 13 17 17 C 1.38592 * 120.02411 * 359.97438 * 16 15 14 18 18 O 1.35993 * 120.06981 * 179.97438 * 17 16 15 19 19 C 1.42898 * 117.00000 * 359.97438 * 18 17 16 20 20 C 1.39111 * 119.86624 * 0.26464 * 17 16 15 21 21 O 1.36018 * 120.07902 * 179.72354 * 20 17 16 22 22 C 1.42898 * 116.99609 * 90.00297 * 21 20 17 23 23 C 1.38336 * 119.92792 * 83.50106 * 14 13 4 24 24 Cl 1.73589 * 120.01502 * 359.95342 * 23 14 13 25 25 H 1.09000 * 109.47134 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47205 * 299.99857 * 1 2 3 27 27 H 1.08994 * 109.47371 * 60.00283 * 1 2 3 28 28 H 1.09008 * 109.47570 * 240.00143 * 2 1 3 29 29 H 1.09001 * 109.47732 * 119.99896 * 2 1 3 30 30 H 1.09004 * 109.46894 * 65.18000 * 3 2 1 31 31 H 1.09000 * 109.46708 * 305.18797 * 3 2 1 32 32 H 0.97006 * 119.99798 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.47075 * 143.03234 * 13 4 3 34 34 H 1.09002 * 109.47125 * 23.04247 * 13 4 3 35 35 H 1.08001 * 119.92024 * 0.02992 * 15 14 13 36 36 H 1.08006 * 119.99099 * 179.97438 * 16 15 14 37 37 H 1.09000 * 109.47293 * 59.99851 * 19 18 17 38 38 H 1.09003 * 109.47143 * 299.99991 * 19 18 17 39 39 H 1.09002 * 109.47164 * 180.02562 * 19 18 17 40 40 H 1.09002 * 109.46821 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.47661 * 300.00189 * 22 21 20 42 42 H 1.09008 * 109.47315 * 60.00462 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4997 1.4444 -0.1248 5 6 4.0808 1.4299 -1.3647 6 1 5.1565 1.4002 -1.4566 7 6 3.2874 1.4535 -2.5034 8 7 2.0781 0.9346 -2.4738 9 14 3.9358 2.2216 -4.0779 10 1 4.5231 1.1640 -4.9393 11 1 2.8214 2.8861 -4.8001 12 1 4.9788 3.2253 -3.7461 13 6 4.3376 1.4619 1.0767 14 6 4.7629 2.8771 1.3721 15 6 5.9962 3.3307 0.9425 16 6 6.3911 4.6278 1.2114 17 6 5.5502 5.4774 1.9127 18 8 5.9380 6.7535 2.1782 19 6 7.2261 7.1519 1.7048 20 6 4.3112 5.0204 2.3497 21 8 3.4848 5.8488 3.0432 22 6 2.5627 6.6312 2.2820 23 6 3.9187 3.7194 2.0731 24 17 2.3707 3.1467 2.6107 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.7544 1.9288 0.9328 31 1 1.6028 1.9824 -0.8399 32 1 1.5235 0.9515 -3.2695 33 1 5.2204 0.8438 0.9131 34 1 3.7706 1.0691 1.9208 35 1 6.6525 2.6701 0.3954 36 1 7.3553 4.9793 0.8749 37 1 7.2603 7.0552 0.6197 38 1 7.9901 6.5149 2.1506 39 1 7.4107 8.1894 1.9835 40 1 1.9651 7.2456 2.9555 41 1 3.1124 7.2742 1.5946 42 1 1.9066 5.9704 1.7154 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:24 Heat of formation + Delta-G solvation = -21.906201 kcal Electronic energy + Delta-G solvation = -25033.039014 eV Core-core repulsion = 21427.359477 eV Total energy + Delta-G solvation = -3605.679537 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.123 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.31138 -38.08083 -37.41089 -35.90937 -35.69072 -32.08956 -31.61886 -30.10362 -29.53206 -27.54003 -26.63496 -25.43848 -25.24296 -22.21559 -22.13425 -20.80633 -19.72131 -18.21319 -16.95859 -16.76832 -16.39238 -15.94193 -15.13794 -15.02943 -14.83663 -14.42918 -14.09420 -13.79500 -13.65630 -13.27162 -13.04378 -12.55780 -12.36738 -12.26839 -12.00507 -11.70995 -11.56455 -11.48276 -11.31304 -10.98123 -10.90243 -10.69648 -10.53758 -10.50378 -10.11863 -9.99965 -9.91666 -9.71605 -9.66270 -8.94337 -8.32888 -8.18429 -7.81764 -6.88950 -5.77007 -2.99721 1.30617 1.56697 2.43682 3.38089 3.41380 3.48500 3.50717 3.60551 4.11850 4.54607 4.93063 5.08775 5.10668 5.23744 5.29267 5.38188 5.46104 5.52108 5.55245 5.59880 5.65379 5.70223 5.81433 6.16837 6.30527 6.32188 6.35120 6.43242 6.59938 6.66665 6.78664 6.86650 6.91106 7.04609 7.21010 7.31080 7.40632 7.71961 7.75232 7.90427 8.18215 8.36556 9.26507 9.89504 10.34329 11.25236 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.012896 B = 0.005787 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.674133 B = 4837.372987 C = 6037.574797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.120 4.120 3 C 0.158 3.842 4 N -0.586 5.586 5 C -0.253 4.253 6 H 0.074 0.926 7 C 0.007 3.993 8 N -0.881 5.881 9 Si 0.878 3.122 10 H -0.292 1.292 11 H -0.291 1.291 12 H -0.283 1.283 13 C 0.185 3.815 14 C -0.091 4.091 15 C -0.060 4.060 16 C -0.195 4.195 17 C 0.103 3.897 18 O -0.309 6.309 19 C 0.027 3.973 20 C 0.063 3.937 21 O -0.320 6.320 22 C 0.036 3.964 23 C -0.009 4.009 24 Cl -0.045 7.045 25 H 0.030 0.970 26 H 0.027 0.973 27 H 0.053 0.947 28 H 0.094 0.906 29 H 0.012 0.988 30 H 0.026 0.974 31 H 0.082 0.918 32 H 0.250 0.750 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.044 0.956 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.294 8.543 9.043 13.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.159 4.159 3 C 0.033 3.967 4 N -0.305 5.305 5 C -0.381 4.381 6 H 0.092 0.908 7 C -0.191 4.191 8 N -0.526 5.526 9 Si 0.707 3.293 10 H -0.219 1.219 11 H -0.217 1.217 12 H -0.208 1.208 13 C 0.057 3.943 14 C -0.095 4.095 15 C -0.079 4.079 16 C -0.214 4.214 17 C 0.057 3.943 18 O -0.223 6.223 19 C -0.068 4.068 20 C 0.018 3.982 21 O -0.236 6.236 22 C -0.059 4.059 23 C -0.037 4.037 24 Cl -0.016 7.016 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.072 0.928 28 H 0.113 0.887 29 H 0.031 0.969 30 H 0.044 0.956 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.062 0.938 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.882 8.631 9.229 13.546 hybrid contribution 0.387 0.444 -1.430 1.547 sum 5.269 9.075 7.799 13.074 Atomic orbital electron populations 1.21581 0.98626 0.98988 0.99955 1.22018 0.92865 1.00606 1.00448 1.21296 0.81816 0.94752 0.98804 1.44133 1.01512 1.84521 1.00383 1.19145 0.91491 1.44799 0.82645 0.90849 1.24651 0.96301 1.00976 0.97148 1.70299 1.10654 1.43733 1.27921 0.86641 0.78042 0.80196 0.84402 1.21907 1.21707 1.20847 1.19734 0.95389 0.88434 0.90792 1.20987 0.92538 1.00961 0.95049 1.20816 0.95463 0.94601 0.96990 1.21183 1.00648 0.95251 1.04285 1.19016 0.93940 0.84374 0.96991 1.86108 1.35303 1.25944 1.74935 1.23041 0.83309 1.00994 0.99472 1.17508 0.89646 0.89078 1.01980 1.86076 1.49475 1.55646 1.32395 1.22965 0.91806 0.94398 0.96726 1.20839 0.89136 0.93160 1.00580 1.98335 1.26824 1.88047 1.88354 0.95113 0.95403 0.92788 0.88749 0.96925 0.95584 0.90018 0.93918 0.92822 0.92338 0.84844 0.85134 0.92707 0.92719 0.88485 0.89149 0.93756 0.93365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.91 37.16 0.37 -2.29 16 2 C -0.12 -2.72 5.58 -26.73 -0.15 -2.87 16 3 C 0.16 3.70 4.89 -4.04 -0.02 3.68 16 4 N -0.59 -13.83 2.53 -174.61 -0.44 -14.27 16 5 C -0.25 -6.51 9.67 -15.06 -0.15 -6.66 16 6 H 0.07 1.85 7.98 -52.49 -0.42 1.43 16 7 C 0.01 0.18 4.97 -17.43 -0.09 0.09 16 8 N -0.88 -23.80 8.36 55.49 0.46 -23.33 16 9 Si 0.88 21.08 29.64 -169.99 -5.04 16.04 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.18 3.68 5.36 -5.20 -0.03 3.65 16 14 C -0.09 -1.68 5.41 -104.58 -0.57 -2.25 16 15 C -0.06 -0.98 9.66 -39.58 -0.38 -1.37 16 16 C -0.19 -2.91 9.04 -39.45 -0.36 -3.27 16 17 C 0.10 1.67 6.70 -39.13 -0.26 1.40 16 18 O -0.31 -4.50 10.28 -34.24 -0.35 -4.85 16 19 C 0.03 0.26 9.81 101.05 0.99 1.26 16 20 C 0.06 1.12 5.73 -39.10 -0.22 0.89 16 21 O -0.32 -5.42 9.66 -34.32 -0.33 -5.75 16 22 C 0.04 0.50 11.13 101.05 1.12 1.62 16 23 C -0.01 -0.17 6.32 -39.38 -0.25 -0.42 16 24 Cl -0.04 -0.80 23.79 -51.86 -1.23 -2.04 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.09 2.45 6.42 -51.92 -0.33 2.12 16 29 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.03 0.57 4.42 -51.93 -0.23 0.34 16 31 H 0.08 2.18 5.86 -51.93 -0.30 1.87 16 32 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 33 H 0.05 1.02 7.99 -51.93 -0.41 0.61 16 34 H 0.06 1.13 7.07 -51.93 -0.37 0.76 16 35 H 0.13 2.02 8.06 -52.49 -0.42 1.59 16 36 H 0.13 1.55 6.30 -52.48 -0.33 1.22 16 37 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 38 H 0.05 0.46 7.66 -51.93 -0.40 0.07 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 LS Contribution 352.64 15.07 5.31 5.31 Total: -1.00 -28.89 352.64 -7.74 -36.63 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -6.13 Total: -1.23 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 0.02 Total: -6.52 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.02 Total: -37.60 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -0.68 Total: -10.60 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.04 Total: 16.04 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.23 Total: -2.04 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.89 -7.74 -36.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.724 kcal (2) G-P(sol) polarization free energy of solvation -28.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds