Wall clock time and date at job start Tue Mar 31 2020 11:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47344 * 2 1 4 4 N 1.46499 * 109.47329 * 185.18499 * 3 2 1 5 5 C 1.36938 * 119.99815 * 87.53071 * 4 3 2 6 6 H 1.07997 * 120.00207 * 181.90429 * 5 4 3 7 7 C 1.38812 * 120.00096 * 1.91203 * 5 4 3 8 8 N 1.31620 * 119.99802 * 331.01881 * 7 5 4 9 9 Si 1.86799 * 120.00266 * 151.02488 * 7 5 4 10 10 H 1.48501 * 109.47332 * 94.98911 * 9 7 5 11 11 H 1.48491 * 109.47445 * 214.99448 * 9 7 5 12 12 H 1.48508 * 109.47172 * 334.99440 * 9 7 5 13 13 C 1.46494 * 120.00045 * 267.52703 * 4 3 2 14 14 C 1.50698 * 109.47502 * 263.03346 * 13 4 3 15 15 C 1.38252 * 119.93517 * 263.47285 * 14 13 4 16 16 C 1.38227 * 120.15267 * 180.02562 * 15 14 13 17 17 C 1.38592 * 120.02411 * 359.97438 * 16 15 14 18 18 O 1.35993 * 120.06981 * 179.97438 * 17 16 15 19 19 C 1.42898 * 117.00000 * 359.97438 * 18 17 16 20 20 C 1.39111 * 119.86624 * 0.26464 * 17 16 15 21 21 O 1.36018 * 120.07902 * 179.72354 * 20 17 16 22 22 C 1.42898 * 116.99609 * 90.00297 * 21 20 17 23 23 C 1.38336 * 119.92792 * 83.50106 * 14 13 4 24 24 Cl 1.73589 * 120.01502 * 359.95342 * 23 14 13 25 25 H 1.09000 * 109.47134 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47205 * 299.99857 * 1 2 3 27 27 H 1.08994 * 109.47371 * 60.00283 * 1 2 3 28 28 H 1.09008 * 109.47570 * 240.00143 * 2 1 3 29 29 H 1.09001 * 109.47732 * 119.99896 * 2 1 3 30 30 H 1.09004 * 109.46894 * 65.18000 * 3 2 1 31 31 H 1.09000 * 109.46708 * 305.18797 * 3 2 1 32 32 H 0.97006 * 119.99798 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.47075 * 143.03234 * 13 4 3 34 34 H 1.09002 * 109.47125 * 23.04247 * 13 4 3 35 35 H 1.08001 * 119.92024 * 0.02992 * 15 14 13 36 36 H 1.08006 * 119.99099 * 179.97438 * 16 15 14 37 37 H 1.09000 * 109.47293 * 59.99851 * 19 18 17 38 38 H 1.09003 * 109.47143 * 299.99991 * 19 18 17 39 39 H 1.09002 * 109.47164 * 180.02562 * 19 18 17 40 40 H 1.09002 * 109.46821 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.47661 * 300.00189 * 22 21 20 42 42 H 1.09008 * 109.47315 * 60.00462 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4997 1.4444 -0.1248 5 6 4.0808 1.4299 -1.3647 6 1 5.1565 1.4002 -1.4566 7 6 3.2874 1.4535 -2.5034 8 7 2.0781 0.9346 -2.4738 9 14 3.9358 2.2216 -4.0779 10 1 4.5231 1.1640 -4.9393 11 1 2.8214 2.8861 -4.8001 12 1 4.9788 3.2253 -3.7461 13 6 4.3376 1.4619 1.0767 14 6 4.7629 2.8771 1.3721 15 6 5.9962 3.3307 0.9425 16 6 6.3911 4.6278 1.2114 17 6 5.5502 5.4774 1.9127 18 8 5.9380 6.7535 2.1782 19 6 7.2261 7.1519 1.7048 20 6 4.3112 5.0204 2.3497 21 8 3.4848 5.8488 3.0432 22 6 2.5627 6.6312 2.2820 23 6 3.9187 3.7194 2.0731 24 17 2.3707 3.1467 2.6107 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.7544 1.9288 0.9328 31 1 1.6028 1.9824 -0.8399 32 1 1.5235 0.9515 -3.2695 33 1 5.2204 0.8438 0.9131 34 1 3.7706 1.0691 1.9208 35 1 6.6525 2.6701 0.3954 36 1 7.3553 4.9793 0.8749 37 1 7.2603 7.0552 0.6197 38 1 7.9901 6.5149 2.1506 39 1 7.4107 8.1894 1.9835 40 1 1.9651 7.2456 2.9555 41 1 3.1124 7.2742 1.5946 42 1 1.9066 5.9704 1.7154 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:23 Heat of formation + Delta-G solvation = -36.318254 kcal Electronic energy + Delta-G solvation = -25033.663968 eV Core-core repulsion = 21427.359477 eV Total energy + Delta-G solvation = -3606.304490 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.123 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.52084 -39.25073 -38.81338 -37.42662 -37.18062 -33.71916 -33.47733 -31.34051 -31.02470 -28.51537 -27.82728 -27.30183 -26.68057 -23.78245 -23.46006 -22.31785 -21.47154 -19.38328 -18.58715 -18.05453 -17.85025 -17.09372 -16.91196 -16.11388 -16.06906 -15.71248 -15.51488 -15.44071 -15.21874 -14.79634 -14.60644 -14.08429 -13.74150 -13.56270 -13.36036 -13.21494 -12.86552 -12.82710 -12.70011 -12.63145 -12.53826 -12.24664 -12.10556 -11.90001 -11.76155 -11.71909 -11.58826 -11.47696 -11.03080 -10.69717 -10.13253 -9.64274 -9.12156 -8.74132 -7.74021 -4.96890 0.02689 0.27229 1.10347 1.46667 1.53015 1.58897 2.33311 2.37102 2.60508 2.87955 3.33102 3.87415 3.89169 3.97040 4.13874 4.27107 4.35342 4.41390 4.42658 4.44075 4.45584 4.59721 4.67343 4.71214 4.74541 4.77398 4.96153 5.00586 5.07703 5.09417 5.18946 5.28829 5.50509 5.54391 5.57313 5.61108 5.73469 5.98029 6.10123 6.27832 6.41891 6.55612 7.30240 8.01516 8.42969 9.26307 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.012896 B = 0.005787 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.674133 B = 4837.372987 C = 6037.574797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.113 4.113 3 C 0.165 3.835 4 N -0.599 5.599 5 C -0.251 4.251 6 H 0.077 0.923 7 C -0.041 4.041 8 N -0.900 5.900 9 Si 0.931 3.069 10 H -0.294 1.294 11 H -0.302 1.302 12 H -0.278 1.278 13 C 0.187 3.813 14 C -0.110 4.110 15 C -0.063 4.063 16 C -0.185 4.185 17 C 0.105 3.895 18 O -0.323 6.323 19 C 0.015 3.985 20 C 0.047 3.953 21 O -0.331 6.331 22 C 0.033 3.967 23 C -0.023 4.023 24 Cl -0.050 7.050 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.038 0.962 28 H 0.059 0.941 29 H 0.018 0.982 30 H 0.042 0.958 31 H 0.048 0.952 32 H 0.242 0.758 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.147 0.853 36 H 0.166 0.834 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.046 0.954 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.864 9.946 9.752 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.152 4.152 3 C 0.040 3.960 4 N -0.319 5.319 5 C -0.380 4.380 6 H 0.095 0.905 7 C -0.237 4.237 8 N -0.547 5.547 9 Si 0.761 3.239 10 H -0.221 1.221 11 H -0.229 1.229 12 H -0.203 1.203 13 C 0.060 3.940 14 C -0.114 4.114 15 C -0.082 4.082 16 C -0.204 4.204 17 C 0.059 3.941 18 O -0.237 6.237 19 C -0.079 4.079 20 C 0.002 3.998 21 O -0.248 6.248 22 C -0.061 4.061 23 C -0.051 4.051 24 Cl -0.021 7.021 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.037 0.963 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.165 0.835 36 H 0.184 0.816 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.065 0.935 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.489 10.055 9.963 15.571 hybrid contribution 0.003 0.112 -1.549 1.553 sum 6.492 10.167 8.414 14.707 Atomic orbital electron populations 1.21474 0.96616 1.00149 1.00026 1.21863 0.94698 0.99778 0.98881 1.21140 0.82048 0.94812 0.98003 1.44267 1.01823 1.84951 1.00897 1.19390 0.91692 1.43308 0.83596 0.90486 1.25178 0.96967 1.02188 0.99346 1.70446 1.11426 1.44989 1.27825 0.85807 0.77035 0.79252 0.81828 1.22140 1.22897 1.20314 1.19767 0.95102 0.89698 0.89435 1.20807 0.93906 0.99896 0.96810 1.21041 0.94914 0.95627 0.96638 1.21492 1.01686 0.94202 1.03021 1.19135 0.93455 0.85325 0.96194 1.86104 1.37706 1.24832 1.75053 1.23421 0.81525 1.02753 1.00161 1.17706 0.90633 0.89061 1.02441 1.86047 1.49857 1.55762 1.33117 1.23124 0.91439 0.94113 0.97384 1.20978 0.88983 0.93791 1.01350 1.98316 1.27283 1.88167 1.88355 0.93409 0.93651 0.94299 0.92197 0.96331 0.94002 0.93409 0.94815 0.92101 0.92171 0.83505 0.81637 0.91869 0.91150 0.85996 0.86277 0.93492 0.94540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.92 9.91 71.98 0.71 -4.21 16 2 C -0.11 -5.15 5.58 30.59 0.17 -4.98 16 3 C 0.16 7.82 4.89 86.38 0.42 8.25 16 4 N -0.60 -28.33 2.53 -706.35 -1.79 -30.12 16 5 C -0.25 -12.93 9.67 84.03 0.81 -12.12 16 6 H 0.08 3.83 7.98 -2.91 -0.02 3.81 16 7 C -0.04 -2.22 4.97 84.86 0.42 -1.80 16 8 N -0.90 -49.86 8.36 21.65 0.18 -49.68 16 9 Si 0.93 43.83 29.64 68.60 2.03 45.86 16 10 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 11 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 C 0.19 7.35 5.36 85.63 0.46 7.81 16 14 C -0.11 -3.99 5.41 -19.84 -0.11 -4.09 16 15 C -0.06 -1.97 9.66 22.27 0.22 -1.75 16 16 C -0.19 -5.00 9.04 22.35 0.20 -4.80 16 17 C 0.11 3.19 6.70 22.56 0.15 3.34 16 18 O -0.32 -8.52 10.28 -79.58 -0.82 -9.34 16 19 C 0.02 0.24 9.81 113.37 1.11 1.36 16 20 C 0.05 1.61 5.73 22.58 0.13 1.74 16 21 O -0.33 -10.88 9.66 -79.87 -0.77 -11.65 16 22 C 0.03 0.90 11.13 113.37 1.26 2.16 16 23 C -0.02 -0.84 6.32 22.40 0.14 -0.70 16 24 Cl -0.05 -1.79 23.79 -2.72 -0.06 -1.86 16 25 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.06 3.18 6.42 -2.38 -0.02 3.16 16 29 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.04 1.84 4.42 -2.39 -0.01 1.83 16 31 H 0.05 2.61 5.86 -2.39 -0.01 2.60 16 32 H 0.24 13.32 8.31 -92.70 -0.77 12.54 16 33 H 0.06 2.27 7.99 -2.38 -0.02 2.25 16 34 H 0.06 2.30 7.07 -2.39 -0.02 2.28 16 35 H 0.15 4.09 8.06 -2.91 -0.02 4.06 16 36 H 0.17 3.20 6.30 -2.91 -0.02 3.18 16 37 H 0.06 0.91 7.66 -2.39 -0.02 0.89 16 38 H 0.07 0.91 7.66 -2.39 -0.02 0.89 16 39 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -62.42 352.64 5.89 -56.52 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 1.02 Total: 10.07 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 6.11 Total: -9.79 kcal Atomic # 7 Polarization: -78.19 SS G_CDS: -1.61 Total: -79.80 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -1.59 Total: -20.99 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -0.06 Total: -1.86 kcal Total: -62.42 5.89 -56.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.205 kcal (2) G-P(sol) polarization free energy of solvation -62.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds