Wall clock time and date at job start Tue Mar 31 2020 10:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50707 * 110.53211 * 2 1 4 4 C 1.38362 * 119.84684 * 91.37506 * 3 2 1 5 5 C 1.37947 * 120.14934 * 179.97438 * 4 3 2 6 6 C 1.39626 * 119.84448 * 0.26455 * 5 4 3 7 7 C 1.43209 * 120.14996 * 179.72123 * 6 5 4 8 8 N 6.84434 * 110.39869 * 0.02562 * 2 1 3 9 9 C 1.39630 * 119.70060 * 359.43964 * 6 5 4 10 10 C 1.37949 * 119.84894 * 0.57772 * 9 6 5 11 11 N 1.47309 * 110.59850 * 122.82661 * 2 1 3 12 12 C 1.34521 * 106.61939 * 118.67812 * 11 2 1 13 13 O 1.21541 * 123.77143 * 180.02562 * 12 11 2 14 14 N 1.33789 * 112.45754 * 0.02562 * 12 11 2 15 15 C 1.46498 * 124.17893 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.47451 * 90.02571 * 15 14 12 17 17 C 1.50693 * 109.47514 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00124 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99986 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99856 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47188 * 59.99918 * 21 19 17 23 23 H 1.48499 * 109.46966 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46835 * 300.00128 * 21 19 17 25 25 C 1.34765 * 111.64527 * 0.02562 * 14 12 11 26 26 O 1.21237 * 127.16098 * 180.02562 * 25 14 12 27 27 H 1.09002 * 109.46673 * 60.00299 * 1 2 3 28 28 H 1.08995 * 109.46795 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46882 * 300.00482 * 1 2 3 30 30 H 1.07999 * 119.92639 * 359.97438 * 4 3 2 31 31 H 1.08002 * 120.07327 * 179.97438 * 5 4 3 32 32 H 1.08002 * 120.07856 * 180.26223 * 9 6 5 33 33 H 1.07993 * 119.92603 * 179.72307 * 10 9 6 34 34 H 0.96998 * 126.69118 * 298.72328 * 11 2 1 35 35 H 1.09005 * 109.47437 * 210.02454 * 15 14 12 36 36 H 1.08998 * 109.47491 * 330.02343 * 15 14 12 37 37 H 1.08996 * 109.46471 * 300.00482 * 16 15 14 38 38 H 1.09001 * 109.46511 * 59.99689 * 16 15 14 39 39 H 0.97005 * 120.00102 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0587 1.4113 0.0000 4 6 2.3271 2.0461 1.1998 5 6 2.8116 3.3377 1.2070 6 6 3.0257 4.0063 0.0001 7 6 3.5228 5.3493 0.0002 8 7 3.9157 6.4151 0.0029 9 6 2.7585 3.3575 -1.2071 10 6 2.2740 2.0659 -1.1998 11 7 2.0483 -0.7475 1.1587 12 6 2.7627 -1.7751 0.6654 13 8 3.3320 -2.5961 1.3576 14 7 2.7766 -1.7923 -0.6723 15 6 3.4769 -2.7979 -1.4752 16 6 2.5361 -3.9711 -1.7570 17 6 3.2562 -5.0052 -2.5834 18 1 4.2823 -4.8423 -2.8778 19 6 2.6052 -6.1600 -2.9627 20 7 1.3560 -6.3591 -2.6029 21 14 3.4980 -7.4422 -3.9865 22 1 4.6877 -7.9288 -3.2428 23 1 2.5848 -8.5808 -4.2601 24 1 3.9311 -6.8359 -5.2711 25 6 2.0678 -0.7697 -1.1900 26 8 1.8948 -0.5185 -2.3633 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 2.1570 1.5292 2.1327 31 1 3.0204 3.8321 2.1442 32 1 2.9259 3.8674 -2.1443 33 1 2.0627 1.5645 -2.1327 34 1 1.9023 -0.5397 2.0949 35 1 3.7952 -2.3529 -2.4180 36 1 4.3499 -3.1553 -0.9292 37 1 2.2178 -4.4160 -0.8142 38 1 1.6631 -3.6136 -2.3030 39 1 0.8979 -7.1714 -2.8700 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098070102.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:05 Heat of formation + Delta-G solvation = 12.217156 kcal Electronic energy + Delta-G solvation = -25162.356072 eV Core-core repulsion = 21457.048741 eV Total energy + Delta-G solvation = -3705.307331 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.54256 -39.84127 -38.40412 -37.05695 -36.14738 -35.34477 -33.19048 -32.08368 -31.54364 -30.05125 -29.89859 -25.88177 -25.11063 -23.60520 -23.37196 -22.15457 -21.20945 -19.84747 -19.37578 -17.92382 -17.24162 -16.76781 -16.11657 -16.00607 -15.28238 -15.19112 -14.90749 -14.77016 -14.50959 -14.44290 -14.15478 -14.00678 -13.70932 -13.45066 -13.14288 -13.01024 -12.71868 -12.69599 -12.55172 -12.38972 -11.92071 -11.69738 -11.50898 -10.97088 -10.92739 -10.56838 -10.22978 -10.13246 -9.91683 -9.62552 -9.47495 -9.31937 -9.22766 -8.97032 -8.41906 -6.07065 -4.11022 0.24150 0.88548 1.73597 2.28685 2.42173 2.49292 3.12007 3.27706 3.32108 3.36112 3.38852 3.44943 3.46173 3.85090 4.01076 4.41228 4.42481 4.47009 4.58778 4.88179 5.02904 5.17141 5.26108 5.29762 5.33563 5.42329 5.55262 5.68149 5.80949 5.84404 5.93743 5.96661 6.09337 6.24764 6.31747 6.59158 6.77874 7.09219 7.25865 7.50701 7.56788 7.65501 7.89112 8.22954 8.34433 8.93720 9.53267 11.04551 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.024213 B = 0.003027 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.109894 B = 9246.948865 C = 9594.913246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.158 3.842 3 C -0.058 4.058 4 C -0.099 4.099 5 C -0.069 4.069 6 C -0.027 4.027 7 C 0.256 3.744 8 N -0.418 5.418 9 C -0.064 4.064 10 C -0.107 4.107 11 N -0.726 5.726 12 C 0.703 3.297 13 O -0.532 6.532 14 N -0.564 5.564 15 C 0.118 3.882 16 C 0.013 3.987 17 C -0.523 4.523 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.898 3.102 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.533 3.467 26 O -0.460 6.460 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.155 0.845 34 H 0.435 0.565 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.024 0.976 38 H 0.022 0.978 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.217 19.006 8.021 20.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.066 3.934 3 C -0.060 4.060 4 C -0.117 4.117 5 C -0.089 4.089 6 C -0.031 4.031 7 C -0.060 4.060 8 N -0.093 5.093 9 C -0.084 4.084 10 C -0.125 4.125 11 N -0.392 5.392 12 C 0.404 3.596 13 O -0.405 6.405 14 N -0.309 5.309 15 C 0.000 4.000 16 C -0.025 4.025 17 C -0.562 4.562 18 H 0.077 0.923 19 C -0.142 4.142 20 N -0.530 5.530 21 Si 0.725 3.275 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 C 0.319 3.681 26 O -0.330 6.330 27 H 0.105 0.895 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.152 0.848 31 H 0.154 0.846 32 H 0.156 0.844 33 H 0.172 0.828 34 H 0.279 0.721 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.043 0.957 38 H 0.040 0.960 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.458 20.104 7.657 21.562 hybrid contribution 0.144 -1.126 -0.070 1.137 sum -1.314 18.979 7.587 20.481 Atomic orbital electron populations 1.22012 0.88994 1.04654 1.04453 1.20224 0.97347 0.89634 0.86175 1.19764 0.98381 0.93519 0.94344 1.20782 0.99080 0.94225 0.97656 1.21115 0.96829 0.94183 0.96817 1.16074 1.04719 0.87113 0.95151 1.25706 0.93622 0.92778 0.93845 1.81268 1.09077 1.11717 1.07204 1.21205 0.96047 0.94285 0.96874 1.21418 0.97646 0.94362 0.99107 1.45639 1.55809 1.29394 1.08344 1.15907 0.79598 0.81821 0.82231 1.91020 1.47867 1.40701 1.60870 1.46702 1.48328 1.28224 1.07601 1.22267 0.96526 0.87972 0.93277 1.19407 0.94554 0.90891 0.97638 1.20945 0.98790 1.03014 1.33447 0.92258 1.24987 0.94894 0.98189 0.96084 1.69953 1.10539 1.26896 1.45647 0.86567 0.79489 0.80804 0.80632 1.20070 1.21232 1.20086 1.20376 0.77769 0.80712 0.89292 1.90745 1.56764 1.69222 1.16257 0.89520 0.90277 0.90198 0.84771 0.84569 0.84402 0.82783 0.72055 0.89724 0.89546 0.95745 0.96000 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.97 37.16 0.33 -0.87 16 2 C 0.16 1.64 1.16 -133.24 -0.15 1.48 16 3 C -0.06 -0.49 4.88 -104.53 -0.51 -1.00 16 4 C -0.10 -0.63 9.33 -39.64 -0.37 -1.00 16 5 C -0.07 -0.42 9.76 -39.17 -0.38 -0.80 16 6 C -0.03 -0.20 5.73 -106.93 -0.61 -0.81 16 7 C 0.26 2.33 15.33 -22.47 -0.34 1.99 16 8 N -0.42 -4.81 18.54 41.83 0.78 -4.03 16 9 C -0.06 -0.47 9.76 -39.17 -0.38 -0.85 16 10 C -0.11 -0.93 9.16 -39.64 -0.36 -1.29 16 11 N -0.73 -7.80 5.28 -54.02 -0.29 -8.09 16 12 C 0.70 11.48 8.62 -88.03 -0.76 10.73 16 13 O -0.53 -10.66 17.48 5.33 0.09 -10.57 16 14 N -0.56 -9.82 2.60 -120.73 -0.31 -10.13 16 15 C 0.12 2.42 5.64 -4.04 -0.02 2.39 16 16 C 0.01 0.33 5.30 -27.88 -0.15 0.18 16 17 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 21 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 C 0.53 8.03 6.53 -10.56 -0.07 7.96 16 26 O -0.46 -7.72 15.66 5.59 0.09 -7.63 16 27 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.13 0.56 6.93 -52.49 -0.36 0.20 16 31 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 32 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.15 1.52 5.76 -52.49 -0.30 1.22 16 34 H 0.43 3.20 8.09 -40.82 -0.33 2.87 16 35 H 0.08 1.65 8.00 -51.93 -0.42 1.24 16 36 H 0.09 1.76 7.86 -51.93 -0.41 1.35 16 37 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 347.96 15.07 5.24 5.24 Total: -1.00 -34.25 347.96 -7.20 -41.45 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -4.32 Total: -1.75 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: -4.20 Total: 4.92 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 0.91 Total: -48.00 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: 0.18 Total: -18.20 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.25 -7.20 -41.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098070102.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.670 kcal (2) G-P(sol) polarization free energy of solvation -34.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds