Wall clock time and date at job start Tue Mar 31 2020 10:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50707 * 110.53211 * 2 1 4 4 C 1.38362 * 119.84684 * 91.37506 * 3 2 1 5 5 C 1.37947 * 120.14934 * 179.97438 * 4 3 2 6 6 C 1.39626 * 119.84448 * 0.26455 * 5 4 3 7 7 C 1.43209 * 120.14996 * 179.72123 * 6 5 4 8 8 N 6.84434 * 110.39869 * 0.02562 * 2 1 3 9 9 C 1.39630 * 119.70060 * 359.43964 * 6 5 4 10 10 C 1.37949 * 119.84894 * 0.57772 * 9 6 5 11 11 N 1.47309 * 110.59850 * 122.82661 * 2 1 3 12 12 C 1.34521 * 106.61939 * 118.67812 * 11 2 1 13 13 O 1.21541 * 123.77143 * 180.02562 * 12 11 2 14 14 N 1.33789 * 112.45754 * 0.02562 * 12 11 2 15 15 C 1.46498 * 124.17893 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.47451 * 90.02571 * 15 14 12 17 17 C 1.50693 * 109.47514 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00124 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99986 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99856 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47188 * 59.99918 * 21 19 17 23 23 H 1.48499 * 109.46966 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46835 * 300.00128 * 21 19 17 25 25 C 1.34765 * 111.64527 * 0.02562 * 14 12 11 26 26 O 1.21237 * 127.16098 * 180.02562 * 25 14 12 27 27 H 1.09002 * 109.46673 * 60.00299 * 1 2 3 28 28 H 1.08995 * 109.46795 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46882 * 300.00482 * 1 2 3 30 30 H 1.07999 * 119.92639 * 359.97438 * 4 3 2 31 31 H 1.08002 * 120.07327 * 179.97438 * 5 4 3 32 32 H 1.08002 * 120.07856 * 180.26223 * 9 6 5 33 33 H 1.07993 * 119.92603 * 179.72307 * 10 9 6 34 34 H 0.96998 * 126.69118 * 298.72328 * 11 2 1 35 35 H 1.09005 * 109.47437 * 210.02454 * 15 14 12 36 36 H 1.08998 * 109.47491 * 330.02343 * 15 14 12 37 37 H 1.08996 * 109.46471 * 300.00482 * 16 15 14 38 38 H 1.09001 * 109.46511 * 59.99689 * 16 15 14 39 39 H 0.97005 * 120.00102 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0587 1.4113 0.0000 4 6 2.3271 2.0461 1.1998 5 6 2.8116 3.3377 1.2070 6 6 3.0257 4.0063 0.0001 7 6 3.5228 5.3493 0.0002 8 7 3.9157 6.4151 0.0029 9 6 2.7585 3.3575 -1.2071 10 6 2.2740 2.0659 -1.1998 11 7 2.0483 -0.7475 1.1587 12 6 2.7627 -1.7751 0.6654 13 8 3.3320 -2.5961 1.3576 14 7 2.7766 -1.7923 -0.6723 15 6 3.4769 -2.7979 -1.4752 16 6 2.5361 -3.9711 -1.7570 17 6 3.2562 -5.0052 -2.5834 18 1 4.2823 -4.8423 -2.8778 19 6 2.6052 -6.1600 -2.9627 20 7 1.3560 -6.3591 -2.6029 21 14 3.4980 -7.4422 -3.9865 22 1 4.6877 -7.9288 -3.2428 23 1 2.5848 -8.5808 -4.2601 24 1 3.9311 -6.8359 -5.2711 25 6 2.0678 -0.7697 -1.1900 26 8 1.8948 -0.5185 -2.3633 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 2.1570 1.5292 2.1327 31 1 3.0204 3.8321 2.1442 32 1 2.9259 3.8674 -2.1443 33 1 2.0627 1.5645 -2.1327 34 1 1.9023 -0.5397 2.0949 35 1 3.7952 -2.3529 -2.4180 36 1 4.3499 -3.1553 -0.9292 37 1 2.2178 -4.4160 -0.8142 38 1 1.6631 -3.6136 -2.3030 39 1 0.8979 -7.1714 -2.8700 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098070102.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:04 Heat of formation + Delta-G solvation = -10.019317 kcal Electronic energy + Delta-G solvation = -25163.320318 eV Core-core repulsion = 21457.048741 eV Total energy + Delta-G solvation = -3706.271577 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.71235 -40.57064 -39.66169 -37.97153 -37.22013 -36.79090 -35.09064 -33.09141 -32.19634 -31.68377 -30.71680 -27.52165 -26.15712 -24.69843 -24.30015 -23.56532 -22.35919 -21.16671 -20.00034 -19.13578 -18.65332 -18.21537 -17.53933 -16.95511 -16.57819 -16.41460 -16.16583 -15.95237 -15.60061 -15.28549 -15.11276 -14.88610 -14.87071 -14.50096 -14.40176 -14.19091 -13.89279 -13.60949 -13.43280 -13.40835 -13.23117 -12.85107 -12.76545 -12.64336 -12.22511 -12.08678 -12.07217 -11.87372 -11.43552 -11.13240 -10.76873 -10.59460 -10.49971 -10.02116 -9.91472 -8.23893 -6.36431 -0.38907 0.34412 0.53386 1.20004 1.42332 1.45637 1.53305 1.58040 1.77207 1.96792 2.16235 2.41057 2.74364 2.79705 2.85658 3.10610 3.21612 3.74109 3.89725 3.95890 4.00928 4.30304 4.41825 4.45312 4.45651 4.52052 4.63185 4.72694 4.73486 4.77102 5.02614 5.10371 5.16612 5.27263 5.37416 5.38599 5.45537 5.72982 5.73446 5.81172 6.08922 6.11201 6.35129 6.40270 6.77439 7.10770 7.33244 8.88596 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.024213 B = 0.003027 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.109894 B = 9246.948865 C = 9594.913246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.174 3.826 3 C -0.064 4.064 4 C -0.090 4.090 5 C -0.055 4.055 6 C -0.031 4.031 7 C 0.280 3.720 8 N -0.463 5.463 9 C -0.060 4.060 10 C -0.119 4.119 11 N -0.694 5.694 12 C 0.700 3.300 13 O -0.576 6.576 14 N -0.579 5.579 15 C 0.134 3.866 16 C 0.025 3.975 17 C -0.545 4.545 18 H 0.070 0.930 19 C 0.002 3.998 20 N -0.931 5.931 21 Si 0.971 3.029 22 H -0.265 1.265 23 H -0.283 1.283 24 H -0.263 1.263 25 C 0.523 3.477 26 O -0.482 6.482 27 H 0.092 0.908 28 H 0.060 0.940 29 H 0.119 0.881 30 H 0.163 0.837 31 H 0.163 0.837 32 H 0.149 0.851 33 H 0.138 0.862 34 H 0.455 0.545 35 H 0.092 0.908 36 H 0.086 0.914 37 H -0.010 1.010 38 H -0.007 1.007 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.996 20.286 9.056 22.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.083 3.917 3 C -0.067 4.067 4 C -0.108 4.108 5 C -0.076 4.076 6 C -0.034 4.034 7 C -0.034 4.034 8 N -0.139 5.139 9 C -0.080 4.080 10 C -0.137 4.137 11 N -0.361 5.361 12 C 0.401 3.599 13 O -0.452 6.452 14 N -0.323 5.323 15 C 0.013 3.987 16 C -0.013 4.013 17 C -0.584 4.584 18 H 0.089 0.911 19 C -0.196 4.196 20 N -0.571 5.571 21 Si 0.794 3.206 22 H -0.190 1.190 23 H -0.209 1.209 24 H -0.188 1.188 25 C 0.310 3.690 26 O -0.353 6.353 27 H 0.110 0.890 28 H 0.079 0.921 29 H 0.138 0.862 30 H 0.181 0.819 31 H 0.181 0.819 32 H 0.166 0.834 33 H 0.155 0.845 34 H 0.304 0.696 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.008 0.992 38 H 0.012 0.988 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.266 21.454 8.719 23.193 hybrid contribution 0.021 -1.473 -0.402 1.527 sum -1.245 19.981 8.317 21.678 Atomic orbital electron populations 1.22108 0.86966 1.04211 1.06768 1.20215 0.98502 0.89847 0.83101 1.19626 0.99578 0.92102 0.95348 1.21019 0.97873 0.94224 0.97682 1.21403 0.95065 0.93808 0.97277 1.16135 1.05118 0.86342 0.95802 1.25856 0.92425 0.92669 0.92488 1.81300 1.10764 1.13122 1.08671 1.21254 0.95418 0.93735 0.97600 1.21278 0.98808 0.94942 0.98666 1.45444 1.53764 1.27409 1.09518 1.16033 0.79828 0.82457 0.81593 1.90988 1.49981 1.42649 1.61533 1.46675 1.48967 1.28374 1.08276 1.21754 0.95346 0.87305 0.94293 1.19167 0.94477 0.92455 0.95185 1.21438 0.99510 1.03781 1.33631 0.91141 1.26001 0.95676 1.00642 0.97317 1.70095 1.12282 1.27716 1.46985 0.85415 0.78306 0.77717 0.79116 1.19024 1.20853 1.18814 1.21228 0.76957 0.80362 0.90435 1.90728 1.57220 1.69654 1.17702 0.88954 0.92080 0.86201 0.81917 0.81897 0.83360 0.84472 0.69624 0.88976 0.89595 0.99168 0.98827 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.97 71.98 0.65 -1.43 16 2 C 0.17 3.31 1.16 2.24 0.00 3.31 16 3 C -0.06 -0.92 4.88 -19.80 -0.10 -1.02 16 4 C -0.09 -0.76 9.33 22.23 0.21 -0.55 16 5 C -0.06 -0.44 9.76 22.54 0.22 -0.22 16 6 C -0.03 -0.36 5.73 -21.36 -0.12 -0.49 16 7 C 0.28 4.54 15.33 88.34 1.35 5.90 16 8 N -0.46 -10.10 18.54 19.01 0.35 -9.75 16 9 C -0.06 -0.76 9.76 22.54 0.22 -0.54 16 10 C -0.12 -1.88 9.16 22.23 0.20 -1.67 16 11 N -0.69 -13.53 5.28 -443.25 -2.34 -15.87 16 12 C 0.70 22.77 8.62 179.44 1.55 24.32 16 13 O -0.58 -23.39 17.48 -3.84 -0.07 -23.46 16 14 N -0.58 -20.55 2.60 -773.13 -2.01 -22.56 16 15 C 0.13 5.65 5.64 86.38 0.49 6.14 16 16 C 0.03 1.34 5.30 29.85 0.16 1.50 16 17 C -0.55 -30.91 9.11 25.60 0.23 -30.68 16 18 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 19 C 0.00 0.12 5.46 84.66 0.46 0.58 16 20 N -0.93 -56.83 13.29 21.45 0.28 -56.54 16 21 Si 0.97 44.01 29.54 68.60 2.03 46.04 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 24 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 25 C 0.52 15.82 6.53 87.94 0.57 16.39 16 26 O -0.48 -16.58 15.66 -2.90 -0.05 -16.63 16 27 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 29 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.16 0.45 6.93 -2.91 -0.02 0.43 16 31 H 0.16 0.51 8.06 -2.91 -0.02 0.48 16 32 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 33 H 0.14 2.69 5.76 -2.91 -0.02 2.67 16 34 H 0.45 5.16 8.09 -92.71 -0.75 4.41 16 35 H 0.09 3.70 8.00 -2.38 -0.02 3.68 16 36 H 0.09 3.61 7.86 -2.39 -0.02 3.59 16 37 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 38 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 39 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 Total: -1.00 -78.19 347.96 4.65 -73.54 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: 0.36 Total: 3.70 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: 6.10 Total: 21.54 kcal Atomic # 7 Polarization: -101.01 SS G_CDS: -3.72 Total: -104.72 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -0.11 Total: -40.09 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -78.19 4.65 -73.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098070102.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.522 kcal (2) G-P(sol) polarization free energy of solvation -78.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds