Wall clock time and date at job start Tue Mar 31 2020 10:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31910 * 119.04156 * 2 1 4 4 C 1.32168 * 121.03607 * 180.02562 * 3 2 1 5 5 C 1.38804 * 119.14650 * 359.97438 * 4 3 2 6 6 C 1.39494 * 118.26213 * 0.02562 * 5 4 3 7 7 C 1.48460 * 120.54910 * 180.02562 * 6 5 4 8 8 O 1.21474 * 119.99740 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99574 * 179.97438 * 7 6 5 10 10 C 1.46508 * 119.99681 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47169 * 180.02562 * 10 9 7 12 12 C 1.38328 * 119.96224 * 270.02412 * 11 10 9 13 13 C 1.38279 * 120.13490 * 179.97438 * 12 11 10 14 14 C 1.38120 * 120.06774 * 359.77134 * 13 12 11 15 15 C 1.38852 * 119.93464 * 0.50144 * 14 13 12 16 16 O 1.35752 * 120.07221 * 179.74702 * 15 14 13 17 17 C 1.34829 * 116.99954 * 354.17311 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38656 * 119.99670 * 185.03445 * 17 16 15 20 20 N 1.31550 * 120.00275 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99668 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47063 * 60.00398 * 21 19 17 23 23 H 1.48498 * 109.47240 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47319 * 300.00306 * 21 19 17 25 25 C 1.38073 * 119.96539 * 89.99807 * 11 10 9 26 26 N 1.31550 * 119.04013 * 180.28341 * 2 1 3 27 27 H 1.08999 * 109.46950 * 89.99893 * 1 2 3 28 28 H 1.08999 * 109.46933 * 209.99644 * 1 2 3 29 29 H 1.09004 * 109.47015 * 329.99927 * 1 2 3 30 30 H 1.08006 * 120.42905 * 180.02562 * 4 3 2 31 31 H 1.08001 * 120.86779 * 179.97438 * 5 4 3 32 32 H 0.96993 * 120.00552 * 359.97438 * 9 7 6 33 33 H 1.09004 * 109.46757 * 59.99773 * 10 9 7 34 34 H 1.08998 * 109.46890 * 300.00426 * 10 9 7 35 35 H 1.08001 * 119.93314 * 359.97438 * 12 11 10 36 36 H 1.07999 * 119.96467 * 180.02562 * 13 12 11 37 37 H 1.08001 * 120.03298 * 180.27571 * 14 13 12 38 38 H 0.96999 * 119.99936 * 179.97438 * 20 19 17 39 39 H 1.07996 * 120.03547 * 0.04988 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1474 1.1532 0.0000 4 6 3.4683 1.1992 -0.0005 5 6 4.1861 0.0112 -0.0005 6 6 3.4761 -1.1895 -0.0005 7 6 4.1925 -2.4898 0.0001 8 8 5.4070 -2.5140 0.0001 9 7 3.4954 -3.6432 0.0006 10 6 4.2023 -4.9264 0.0006 11 6 3.2003 -6.0520 0.0006 12 6 2.7406 -6.5677 1.1990 13 6 1.8208 -7.6002 1.2031 14 6 1.3547 -8.1166 0.0099 15 6 1.8185 -7.6049 -1.1947 16 8 1.3661 -8.1138 -2.3692 17 6 0.5610 -9.1930 -2.2989 18 1 0.2379 -9.5641 -1.3375 19 6 0.1479 -9.8265 -3.4611 20 7 0.5418 -9.3748 -4.6321 21 14 -0.9670 -11.3222 -3.3637 22 1 -2.2357 -10.9507 -2.6872 23 1 -1.2613 -11.8103 -4.7350 24 1 -0.2900 -12.3949 -2.5916 25 6 2.7418 -6.5671 -1.1956 26 7 2.1456 -1.1501 -0.0057 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 3.9825 2.1490 -0.0001 31 1 5.2661 0.0164 -0.0013 32 1 2.5256 -3.6238 0.0009 33 1 4.8281 -4.9964 0.8904 34 1 4.8274 -4.9968 -0.8896 35 1 3.1008 -6.1631 2.1333 36 1 1.4634 -8.0004 2.1404 37 1 0.6329 -8.9200 0.0138 38 1 0.2530 -9.8182 -5.4451 39 1 3.1014 -6.1643 -2.1309 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113107518.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:54 Heat of formation + Delta-G solvation = 11.055436 kcal Electronic energy + Delta-G solvation = -23978.226071 eV Core-core repulsion = 20272.868364 eV Total energy + Delta-G solvation = -3705.357707 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.52579 -39.64918 -38.98380 -36.85552 -34.77620 -34.08281 -33.52489 -32.35049 -30.84017 -29.18403 -28.80204 -26.79437 -25.48403 -24.78385 -23.22414 -21.74475 -20.99189 -20.83010 -18.66125 -17.98490 -17.53286 -16.96938 -15.92400 -15.86888 -15.74216 -15.29376 -15.18958 -14.98462 -14.46750 -14.42626 -13.88969 -13.70060 -13.61866 -13.49974 -12.94821 -12.72609 -12.67157 -12.45847 -12.23137 -11.70171 -11.41156 -11.29148 -11.13445 -10.97436 -10.85846 -10.73847 -10.58115 -10.49456 -9.84384 -9.62824 -9.43300 -9.12178 -8.90185 -8.27833 -7.34974 -6.50271 -4.09941 0.20836 0.58318 1.84598 2.24821 2.56068 2.97699 3.09856 3.11416 3.13833 3.50904 3.53222 3.70654 3.91542 4.29409 4.49729 4.57677 4.66303 4.88141 5.04727 5.07730 5.12007 5.22484 5.28587 5.45397 5.51217 5.60691 5.68349 5.78859 5.85314 5.99912 6.05102 6.22575 6.28698 6.50401 6.53417 6.79134 6.97036 7.15009 7.24693 7.33099 7.38196 7.67017 7.68965 7.93558 7.99007 8.94874 9.63220 10.67375 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.017056 B = 0.002670 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.248968 B =10483.309727 C =11148.354659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.318 3.682 3 N -0.508 5.508 4 C 0.153 3.847 5 C -0.180 4.180 6 C 0.139 3.861 7 C 0.566 3.434 8 O -0.530 6.530 9 N -0.693 5.693 10 C 0.165 3.835 11 C -0.075 4.075 12 C -0.194 4.194 13 C -0.076 4.076 14 C -0.224 4.224 15 C 0.151 3.849 16 O -0.176 6.176 17 C -0.394 4.394 18 H 0.092 0.908 19 C 0.041 3.959 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.169 4.169 26 N -0.493 5.493 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.177 0.823 31 H 0.161 0.839 32 H 0.415 0.585 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.128 0.872 38 H 0.271 0.729 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.538 16.381 10.347 19.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 N -0.223 5.223 4 C -0.015 4.015 5 C -0.203 4.203 6 C -0.009 4.009 7 C 0.349 3.651 8 O -0.406 6.406 9 N -0.344 5.344 10 C 0.043 3.957 11 C -0.076 4.076 12 C -0.213 4.213 13 C -0.094 4.094 14 C -0.244 4.244 15 C 0.097 3.903 16 O -0.079 6.079 17 C -0.470 4.470 18 H 0.109 0.891 19 C -0.164 4.164 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.195 1.195 25 C -0.189 4.189 26 N -0.210 5.210 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.194 0.806 31 H 0.179 0.821 32 H 0.252 0.748 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.146 0.854 38 H 0.081 0.919 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.432 16.278 9.832 19.172 hybrid contribution -0.072 -0.804 0.049 0.809 sum 2.360 15.474 9.880 18.511 Atomic orbital electron populations 1.20636 0.85037 1.04525 1.04381 1.23307 0.98421 0.82862 0.90303 1.68223 1.10474 1.30450 1.13165 1.23363 0.89438 0.98659 0.90016 1.22963 1.03912 0.92963 1.00417 1.21701 0.89887 0.94845 0.94444 1.17798 0.86554 0.82978 0.77765 1.90793 1.12614 1.86920 1.50265 1.46027 1.11710 1.04850 1.71800 1.20284 0.93078 0.79402 1.02925 1.19205 0.98258 0.96900 0.93213 1.20472 1.03256 1.01327 0.96247 1.20740 0.96102 0.95600 0.96945 1.21246 1.05881 1.05179 0.92081 1.19308 0.91788 0.92565 0.86668 1.83982 1.57481 1.41736 1.24680 1.21279 1.26123 1.04892 0.94718 0.89070 1.25294 0.98049 0.98906 0.94169 1.70023 1.42354 1.39641 0.97523 0.85779 0.79640 0.80049 0.77967 1.19460 1.20237 1.19462 1.20080 1.01287 1.00084 0.97430 1.68228 1.08703 1.31216 1.12882 0.89194 0.89141 0.89418 0.80579 0.82136 0.74786 0.90441 0.90352 0.87483 0.87232 0.85426 0.91877 0.86374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.68 10.31 36.01 0.37 -0.31 16 2 C 0.32 3.47 7.64 -157.30 -1.20 2.26 16 3 N -0.51 -5.26 10.32 -10.73 -0.11 -5.37 16 4 C 0.15 1.28 11.31 -17.20 -0.19 1.09 16 5 C -0.18 -1.77 9.72 -38.90 -0.38 -2.15 16 6 C 0.14 1.73 6.79 -82.63 -0.56 1.17 16 7 C 0.57 7.97 7.83 -12.05 -0.09 7.88 16 8 O -0.53 -8.53 16.43 5.39 0.09 -8.44 16 9 N -0.69 -9.62 5.54 -62.23 -0.34 -9.96 16 10 C 0.17 2.39 5.80 -5.19 -0.03 2.36 16 11 C -0.08 -1.26 5.25 -104.65 -0.55 -1.81 16 12 C -0.19 -3.14 9.70 -39.53 -0.38 -3.52 16 13 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 14 C -0.22 -4.65 9.17 -39.40 -0.36 -5.01 16 15 C 0.15 3.50 6.65 -39.11 -0.26 3.24 16 16 O -0.18 -4.88 9.76 0.05 0.00 -4.88 16 17 C -0.39 -10.74 9.49 30.89 0.29 -10.45 16 18 H 0.09 2.28 5.21 -52.49 -0.27 2.01 16 19 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 20 N -0.86 -24.87 13.67 55.48 0.76 -24.11 16 21 Si 0.94 20.09 29.55 -169.99 -5.02 15.06 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 23 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 25 C -0.17 -3.40 9.65 -39.39 -0.38 -3.78 16 26 N -0.49 -6.06 9.60 -7.32 -0.07 -6.13 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.18 0.78 8.06 -52.48 -0.42 0.36 16 31 H 0.16 1.35 7.74 -52.49 -0.41 0.94 16 32 H 0.42 5.67 7.85 -40.82 -0.32 5.35 16 33 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16 34 H 0.08 1.16 8.08 -51.93 -0.42 0.74 16 35 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.13 2.65 5.64 -52.49 -0.30 2.35 16 38 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 39 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 348.58 15.07 5.25 5.25 Total: -1.00 -32.16 348.58 -7.90 -40.06 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -4.23 Total: 8.26 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -4.22 Total: -9.74 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.23 Total: -45.58 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.09 Total: -13.32 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.16 -7.90 -40.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113107518.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.117 kcal (2) G-P(sol) polarization free energy of solvation -32.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds