Wall clock time and date at job start Tue Mar 31 2020 11:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47216 * 2 1 4 4 N 1.46493 * 109.47064 * 184.60968 * 3 2 1 5 5 C 1.36945 * 119.99887 * 274.32251 * 4 3 2 6 6 H 1.08003 * 119.99759 * 324.47870 * 5 4 3 7 7 C 1.38814 * 119.99766 * 144.47604 * 5 4 3 8 8 N 1.31614 * 119.99499 * 156.27169 * 7 5 4 9 9 Si 1.86796 * 120.00037 * 336.27639 * 7 5 4 10 10 H 1.48496 * 109.47535 * 94.18422 * 9 7 5 11 11 H 1.48502 * 109.46711 * 214.17796 * 9 7 5 12 12 H 1.48500 * 109.47458 * 334.17813 * 9 7 5 13 13 C 1.46492 * 120.00239 * 94.32545 * 4 3 2 14 14 C 1.53001 * 109.47166 * 85.93251 * 13 4 3 15 15 H 1.09005 * 109.46978 * 305.59405 * 14 13 4 16 16 O 1.42892 * 109.47470 * 65.60250 * 14 13 4 17 17 C 1.53007 * 109.47049 * 185.60086 * 14 13 4 18 18 O 1.42903 * 109.47074 * 175.17107 * 17 14 13 19 19 C 1.35922 * 116.99877 * 179.97438 * 18 17 14 20 20 C 1.38703 * 120.06024 * 0.02562 * 19 18 17 21 21 C 1.38160 * 119.95446 * 180.02562 * 20 19 18 22 22 C 1.38272 * 120.07761 * 359.97438 * 21 20 19 23 23 C 1.38250 * 120.12223 * 0.02562 * 22 21 20 24 24 C 1.38259 * 120.03926 * 359.67701 * 23 22 21 25 25 Cl 1.73600 * 120.04022 * 180.31449 * 24 23 22 26 26 H 1.08996 * 109.47492 * 59.99881 * 1 2 3 27 27 H 1.09002 * 109.47412 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47040 * 299.99858 * 1 2 3 29 29 H 1.08998 * 109.46666 * 240.00171 * 2 1 3 30 30 H 1.09004 * 109.46901 * 119.99981 * 2 1 3 31 31 H 1.09002 * 109.46959 * 64.60994 * 3 2 1 32 32 H 1.09001 * 109.46948 * 304.61153 * 3 2 1 33 33 H 0.97001 * 119.99851 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.47373 * 325.92994 * 13 4 3 35 35 H 1.09001 * 109.47305 * 205.93328 * 13 4 3 36 36 H 0.96703 * 114.00213 * 59.99547 * 16 14 13 37 37 H 1.09000 * 109.47140 * 295.16941 * 17 14 13 38 38 H 1.09003 * 109.46790 * 55.17160 * 17 14 13 39 39 H 1.07998 * 120.02284 * 0.02562 * 20 19 18 40 40 H 1.07997 * 119.95516 * 179.97438 * 21 20 19 41 41 H 1.08000 * 119.93957 * 180.02562 * 22 21 20 42 42 H 1.07998 * 119.98114 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5007 1.4440 -0.1110 5 6 4.2730 1.3236 1.0135 6 1 3.9525 1.7773 1.9398 7 6 5.4676 0.6185 0.9628 8 7 6.4175 0.8696 1.8386 9 14 5.7270 -0.6865 -0.3483 10 1 6.4228 -0.0853 -1.5143 11 1 6.5533 -1.7884 0.2069 12 1 4.4114 -1.2233 -0.7797 13 6 4.1354 1.5742 -1.4249 14 6 4.2739 3.0561 -1.7797 15 1 3.2993 3.5392 -1.7088 16 8 5.1826 3.6807 -0.8709 17 6 4.8072 3.1909 -3.2075 18 8 4.8303 4.5706 -3.5790 19 6 5.2816 4.8662 -4.8265 20 6 5.6930 3.8495 -5.6756 21 6 6.1519 4.1525 -6.9430 22 6 6.2009 5.4680 -7.3662 23 6 5.7917 6.4839 -6.5226 24 6 5.3258 6.1858 -5.2554 25 17 4.8043 7.4608 -4.1990 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.7457 1.9319 0.9284 32 1 1.6108 1.9796 -0.8458 33 1 7.2522 0.3766 1.8034 34 1 3.5218 1.0766 -2.1757 35 1 5.1227 1.1131 -1.3988 36 1 6.0718 3.3007 -0.8804 37 1 5.8171 2.7840 -3.2580 38 1 4.1594 2.6415 -3.8906 39 1 5.6547 2.8217 -5.3461 40 1 6.4726 3.3609 -7.6040 41 1 6.5596 5.7023 -8.3576 42 1 5.8313 7.5106 -6.8553 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118004813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:00 Heat of formation + Delta-G solvation = -48.843876 kcal Electronic energy + Delta-G solvation = -24039.660458 eV Core-core repulsion = 20432.812816 eV Total energy + Delta-G solvation = -3606.847642 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.123 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.26854 -38.11705 -36.98559 -36.36172 -35.28519 -32.83115 -31.46248 -31.02789 -30.49194 -29.29109 -26.24708 -25.61844 -23.14104 -22.53719 -21.98486 -21.24678 -19.94646 -18.45573 -17.20189 -16.41741 -16.34027 -16.23181 -15.45603 -15.10025 -14.83505 -14.48154 -14.25980 -14.13177 -14.05046 -13.64240 -13.10438 -12.95792 -12.68618 -12.46241 -12.38472 -12.06955 -11.78417 -11.55162 -11.44263 -11.25801 -11.00753 -10.85583 -10.81421 -10.79574 -10.60938 -10.42684 -10.02054 -9.90655 -9.55600 -9.42070 -9.08306 -8.55277 -8.28756 -6.90471 -6.00390 -3.37443 0.94994 1.16184 2.15566 3.07983 3.17044 3.40472 3.43613 3.44649 4.45134 4.54544 4.64392 4.77622 4.90427 4.93885 5.03935 5.18238 5.25564 5.27525 5.33825 5.51834 5.54729 5.58133 5.63449 5.79103 5.86101 5.91628 5.97395 6.01086 6.09976 6.19809 6.21432 6.36324 6.44311 6.47042 6.50779 6.61519 6.86080 7.03052 7.27582 7.99989 8.35932 8.43246 8.93937 9.68101 10.06113 11.15495 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.014955 B = 0.003632 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.830564 B = 7708.121100 C = 8073.113291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.150 3.850 4 N -0.593 5.593 5 C -0.249 4.249 6 H 0.080 0.920 7 C 0.034 3.966 8 N -0.896 5.896 9 Si 0.866 3.134 10 H -0.290 1.290 11 H -0.301 1.301 12 H -0.268 1.268 13 C 0.109 3.891 14 C 0.095 3.905 15 H 0.098 0.902 16 O -0.530 6.530 17 C 0.021 3.979 18 O -0.288 6.288 19 C 0.146 3.854 20 C -0.203 4.203 21 C -0.075 4.075 22 C -0.156 4.156 23 C -0.074 4.074 24 C -0.074 4.074 25 Cl -0.056 7.056 26 H 0.046 0.954 27 H 0.044 0.956 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.039 0.961 33 H 0.262 0.738 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.370 0.630 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.136 0.864 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.158 6.068 -18.086 19.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.025 3.975 4 N -0.313 5.313 5 C -0.378 4.378 6 H 0.097 0.903 7 C -0.166 4.166 8 N -0.537 5.537 9 Si 0.696 3.304 10 H -0.219 1.219 11 H -0.229 1.229 12 H -0.193 1.193 13 C -0.018 4.018 14 C 0.032 3.968 15 H 0.116 0.884 16 O -0.333 6.333 17 C -0.055 4.055 18 O -0.200 6.200 19 C 0.098 3.902 20 C -0.222 4.222 21 C -0.093 4.093 22 C -0.174 4.174 23 C -0.093 4.093 24 C -0.102 4.102 25 Cl -0.027 7.027 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.216 0.784 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.154 0.846 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.659 6.621 -17.561 19.121 hybrid contribution 0.853 -1.416 -0.998 1.931 sum -2.806 5.205 -18.559 19.478 Atomic orbital electron populations 1.21737 0.97174 1.00560 1.01045 1.22122 0.93766 1.00644 1.01961 1.20948 0.83705 0.93570 0.99304 1.43977 1.00830 1.84036 1.02502 1.18749 1.01717 1.27449 0.89868 0.90252 1.25368 0.96545 0.98103 0.96601 1.69902 1.04806 1.40939 1.38069 0.87163 0.77801 0.83934 0.81462 1.21925 1.22929 1.19317 1.21837 0.98584 0.92569 0.88807 1.22788 0.94051 0.96860 0.83081 0.88416 1.86621 1.23979 1.60301 1.62418 1.24023 1.01689 0.79953 0.99834 1.86324 1.78587 1.28285 1.26760 1.18884 0.93527 0.92063 0.85690 1.21316 1.06347 0.99018 0.95565 1.21042 0.96456 0.96808 0.95029 1.20972 1.03833 0.92340 1.00265 1.20909 0.96916 1.00444 0.91036 1.20251 1.08849 0.87374 0.93693 1.98377 1.89189 1.49408 1.65732 0.93500 0.93711 0.93037 0.93226 0.91716 0.93072 0.94278 0.92834 0.93596 0.91821 0.78392 0.91783 0.91490 0.84606 0.85317 0.85187 0.84555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.15 -2.56 6.24 -26.73 -0.17 -2.73 16 3 C 0.15 2.88 5.69 -4.04 -0.02 2.85 16 4 N -0.59 -13.31 2.08 -173.24 -0.36 -13.67 16 5 C -0.25 -6.67 9.66 -15.05 -0.15 -6.82 16 6 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 7 C 0.03 0.92 5.27 -17.43 -0.09 0.83 16 8 N -0.90 -26.37 13.97 55.49 0.78 -25.60 16 9 Si 0.87 20.87 25.10 -169.99 -4.27 16.61 16 10 H -0.29 -6.61 6.59 56.52 0.37 -6.24 16 11 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 C 0.11 2.16 4.01 -4.05 -0.02 2.14 16 14 C 0.10 1.73 3.49 -26.73 -0.09 1.64 16 15 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 16 O -0.53 -11.26 12.99 -40.26 -0.52 -11.78 16 17 C 0.02 0.32 4.38 37.16 0.16 0.48 16 18 O -0.29 -4.62 9.56 -24.53 -0.23 -4.86 16 19 C 0.15 2.05 6.68 -39.19 -0.26 1.79 16 20 C -0.20 -2.39 9.04 -39.44 -0.36 -2.75 16 21 C -0.08 -0.72 10.04 -39.60 -0.40 -1.12 16 22 C -0.16 -1.41 10.04 -39.56 -0.40 -1.80 16 23 C -0.07 -0.77 9.83 -39.57 -0.39 -1.16 16 24 C -0.07 -0.98 6.33 -39.36 -0.25 -1.23 16 25 Cl -0.06 -0.77 28.50 -51.86 -1.48 -2.25 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.05 1.01 8.07 -51.93 -0.42 0.59 16 32 H 0.04 0.66 8.04 -51.93 -0.42 0.24 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 35 H 0.06 1.37 3.27 -51.93 -0.17 1.20 16 36 H 0.37 7.36 9.05 45.56 0.41 7.78 16 37 H 0.06 0.91 7.66 -51.93 -0.40 0.51 16 38 H 0.07 0.85 7.66 -51.93 -0.40 0.45 16 39 H 0.14 1.44 6.30 -52.49 -0.33 1.11 16 40 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 361.17 15.07 5.44 5.44 Total: -1.00 -30.71 361.17 -8.24 -38.94 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -5.53 Total: 6.70 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -2.06 Total: -9.54 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.41 Total: -39.26 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.76 Total: -16.64 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.27 Total: 16.61 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.48 Total: -2.25 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.71 -8.24 -38.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118004813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.900 kcal (2) G-P(sol) polarization free energy of solvation -30.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds